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Xochitl C. Morgan, Ph.D. - Publications

Affiliations: 
2008 Microbiology, Molecular Biology and Biochemistry University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Molecular Biology, Bioinformatics Biology, Cell Biology
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2025 Nakatsu G, Ko D, Michaud M, Franzosa EA, Morgan XC, Huttenhower C, Garrett WS. Virulence factor discovery identifies associations between the Fic gene family and Fap2 fusobacteria in colorectal cancer microbiomes. Mbio. e0373224. PMID 39807864 DOI: 10.1128/mbio.03732-24  0.31
2022 Turner G, O'Grady M, Hudson D, Morgan X, Frizelle F, Purcell R. Rectal swabs are a reliable method of assessing the colonic microbiome. International Journal of Medical Microbiology : Ijmm. 312: 151549. PMID 35114582 DOI: 10.1016/j.ijmm.2022.151549  0.304
2019 Greening C, Geier R, Wang C, Woods LC, Morales SE, McDonald MJ, Rushton-Green R, Morgan XC, Koike S, Leahy SC, Kelly WJ, Cann I, Attwood GT, Cook GM, Mackie RI. Diverse hydrogen production and consumption pathways influence methane production in ruminants. The Isme Journal. PMID 31243332 DOI: 10.1038/S41396-019-0464-2  0.321
2019 Pasolli E, Asnicar F, Manara S, Zolfo M, Karcher N, Armanini F, Beghini F, Manghi P, Tett A, Ghensi P, Collado MC, Rice BL, DuLong C, Morgan XC, Golden CD, et al. Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle. Cell. 176: 649-662.e20. PMID 30661755 DOI: 10.1016/J.Cell.2019.01.001  0.446
2019 Griffith JC, Morgan XC. Invited Commentary: Improving accessibility of the Human Microbiome Project data through integration with R/Bioconductor. American Journal of Epidemiology. PMID 30649168 DOI: 10.1093/Aje/Kwz007  0.359
2019 Gardner PP, Watson RJ, Morgan XC, Draper JL, Finn RD, Morales SE, Stott MB. Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies. Peerj. 7: e6160. PMID 30631651 DOI: 10.7717/Peerj.6160  0.389
2018 Power JF, Carere CR, Lee CK, Wakerley GLJ, Evans DW, Button M, White D, Climo MD, Hinze AM, Morgan XC, McDonald IR, Cary SC, Stott MB. Microbial biogeography of 925 geothermal springs in New Zealand. Nature Communications. 9: 2876. PMID 30038374 DOI: 10.1038/S41467-018-05020-Y  0.308
2017 McIver LJ, Abu-Ali G, Franzosa EA, Schwager R, Morgan XC, Waldron L, Segata N, Huttenhower C. bioBakery: A meta'omic analysis environment. Bioinformatics (Oxford, England). PMID 29194469 DOI: 10.1093/Bioinformatics/Btx754  0.346
2017 Mallick H, Ma S, Franzosa EA, Vatanen T, Morgan XC, Huttenhower C. Experimental design and quantitative analysis of microbial community multiomics. Genome Biology. 18: 228. PMID 29187204 DOI: 10.1186/S13059-017-1359-Z  0.358
2016 Lee KC, Stott MB, Dunfield PF, Huttenhower C, McDonald IR, Morgan XC. The Chthonomonas calidirosea genome is highly conserved across geography and distinct chemical and microbial environments in the Taupō Volcanic Zone, New Zealand. Applied and Environmental Microbiology. PMID 27060125 DOI: 10.1128/Aem.00139-16  0.463
2015 Lee KC, Morgan XC, Power JF, Dunfield PF, Huttenhower C, Stott MB. Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T). Standards in Genomic Sciences. 10: 101. PMID 26568784 DOI: 10.1186/S40793-015-0099-5  0.358
2015 Börnigen D, Moon YS, Rahnavard G, Waldron L, McIver L, Shafquat A, Franzosa EA, Miropolsky L, Sweeney C, Morgan XC, Garrett WS, Huttenhower C. A reproducible approach to high-throughput biological data acquisition and integration. Peerj. 3: e791. PMID 26157642 DOI: 10.7717/Peerj.791  0.35
2015 Franzosa EA, Hsu T, Sirota-Madi A, Shafquat A, Abu-Ali G, Morgan XC, Huttenhower C. Sequencing and beyond: integrating molecular 'omics' for microbial community profiling. Nature Reviews. Microbiology. 13: 360-72. PMID 25915636 DOI: 10.1038/Nrmicro3451  0.384
2015 Morgan XC, Kabakchiev B, Waldron L, Tyler AD, Tickle TL, Milgrom R, Stempak JM, Gevers D, Xavier RJ, Silverberg MS, Huttenhower C. Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease. Genome Biology. 16: 67. PMID 25887922 DOI: 10.1186/S13059-015-0637-X  0.413
2015 Yasuda K, Oh K, Ren B, Tickle TL, Franzosa EA, Wachtman LM, Miller AD, Westmoreland SV, Mansfield KG, Vallender EJ, Miller GM, Rowlett JK, Gevers D, Huttenhower C, Morgan XC. Biogeography of the intestinal mucosal and lumenal microbiome in the rhesus macaque. Cell Host & Microbe. 17: 385-91. PMID 25732063 DOI: 10.1016/J.Chom.2015.01.015  0.325
2015 Schwager E, Luo C, Huttenhower C, Morgan XC. Sequencing and other tools for studying microbial communities: Genomics and “meta’omic” tools are enabling us to explore the Microbiome from three complementary perspectives–taxonomic, functional, and ecological Microbe. 10: 419-425. DOI: 10.1128/Microbe.10.419.1  0.453
2015 Schwager E, Luo C, Huttenhower C, Morgan XC. Genomic Sequencing and Other Tools for Studying Microbial Communities Microbe Magazine. 10: 419-425. DOI: 10.1128/MICROBE.10.419.1  0.335
2014 Joice R, Yasuda K, Shafquat A, Morgan XC, Huttenhower C. Determining microbial products and identifying molecular targets in the human microbiome. Cell Metabolism. 20: 731-41. PMID 25440055 DOI: 10.1016/J.Cmet.2014.10.003  0.429
2014 Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C. Relating the metatranscriptome and metagenome of the human gut. Proceedings of the National Academy of Sciences of the United States of America. 111: E2329-38. PMID 24843156 DOI: 10.1073/Pnas.1319284111  0.441
2014 Rooks MG, Veiga P, Wardwell-Scott LH, Tickle T, Segata N, Michaud M, Gallini CA, Beal C, van Hylckama-Vlieg JE, Ballal SA, Morgan XC, Glickman JN, Gevers D, Huttenhower C, Garrett WS. Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission. The Isme Journal. 8: 1403-17. PMID 24500617 DOI: 10.1038/Ismej.2014.3  0.316
2014 Morgan XC, Huttenhower C. Meta'omic analytic techniques for studying the intestinal microbiome. Gastroenterology. 146: 1437-1448.e1. PMID 24486053 DOI: 10.1053/J.Gastro.2014.01.049  0.47
2014 Lee KC, Morgan XC, Dunfield PF, Tamas I, McDonald IR, Stott MB. Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes. The Isme Journal. 8: 1522-33. PMID 24477196 DOI: 10.1038/Ismej.2013.251  0.437
2013 Segata N, Börnigen D, Morgan XC, Huttenhower C. PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes. Nature Communications. 4: 2304. PMID 23942190 DOI: 10.1038/Ncomms3304  0.449
2013 Börnigen D, Morgan XC, Franzosa EA, Ren B, Xavier RJ, Garrett WS, Huttenhower C. Functional profiling of the gut microbiome in disease-associated inflammation. Genome Medicine. 5: 65. PMID 23906180 DOI: 10.1186/Gm469  0.409
2013 Segata N, Boernigen D, Tickle TL, Morgan XC, Garrett WS, Huttenhower C. Computational meta'omics for microbial community studies. Molecular Systems Biology. 9: 666. PMID 23670539 DOI: 10.1038/Msb.2013.22  0.418
2013 Lee KC, Herbold CW, Dunfield PF, Morgan XC, McDonald IR, Stott MB. Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions. Applied and Environmental Microbiology. 79: 2484-7. PMID 23377935 DOI: 10.1128/Aem.03333-12  0.333
2013 Morgan XC, Segata N, Huttenhower C. Biodiversity and functional genomics in the human microbiome. Trends in Genetics : Tig. 29: 51-8. PMID 23140990 DOI: 10.1016/J.Tig.2012.09.005  0.384
2012 Morgan XC, Huttenhower C. Chapter 12: Human microbiome analysis. Plos Computational Biology. 8: e1002808. PMID 23300406 DOI: 10.1371/Journal.Pcbi.1002808  0.426
2012 Morgan XC, Tickle TL, Sokol H, Gevers D, Devaney KL, Ward DV, Reyes JA, Shah SA, LeLeiko N, Snapper SB, Bousvaros A, Korzenik J, Sands BE, Xavier RJ, Huttenhower C. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment. Genome Biology. 13: R79. PMID 23013615 DOI: 10.1186/Gb-2012-13-9-R79  0.368
2012 Dunfield PF, Tamas I, Lee KC, Morgan XC, McDonald IR, Stott MB. Electing a candidate: a speculative history of the bacterial phylum OP10. Environmental Microbiology. 14: 3069-80. PMID 22497633 DOI: 10.1111/J.1462-2920.2012.02742.X  0.347
2007 Morgan XC, Ni S, Miranker DP, Iyer VR. Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining. Bmc Bioinformatics. 8: 445. PMID 18005433 DOI: 10.1186/1471-2105-8-445  0.633
2005 Kim J, Bhinge AA, Morgan XC, Iyer VR. Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment. Nature Methods. 2: 47-53. PMID 15782160 DOI: 10.1038/Nmeth726  0.583
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