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Niels Klitgord - Publications

Affiliations: 
Bioinformatics Boston University, Boston, MA, United States 
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Jose NA, Lau R, Swenson TL, Klitgord N, Garcia-Pichel F, Bowen BP, Baran R, Northen TR. Flux balance modeling to predict bacterial survival during pulsed-activity events Biogeosciences. 15: 2219-2229. DOI: 10.5194/Bg-15-2219-2018  0.378
2017 Greenwald WW, Klitgord N, Seguritan V, Yooseph S, Venter JC, Garner C, Nelson KE, Li W. Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies. Bmc Genomics. 18: 296. PMID 28407798 DOI: 10.1186/S12864-017-3679-5  0.363
2016 Anderson EL, Li W, Klitgord N, Highlander SK, Dayrit M, Seguritan V, Yooseph S, Biggs W, Venter JC, Nelson KE, Jones MB. A robust ambient temperature collection and stabilization strategy: Enabling worldwide functional studies of the human microbiome. Scientific Reports. 6: 31731. PMID 27558918 DOI: 10.1038/Srep31731  0.302
2015 Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride DT, Yooseph S, Biggs W, Nelson KE, Venter JC. Library preparation methodology can influence genomic and functional predictions in human microbiome research. Proceedings of the National Academy of Sciences of the United States of America. PMID 26512100 DOI: 10.1073/Pnas.1519288112  0.399
2015 Nunes da Rocha U, Cadillo-Quiroz H, Karaoz U, Rajeev L, Klitgord N, Dunn S, Truong V, Buenrostro M, Bowen BP, Garcia-Pichel F, Mukhopadhyay A, Northen TR, Brodie EL. Isolation of a significant fraction of non-phototroph diversity from a desert Biological Soil Crust. Frontiers in Microbiology. 6: 277. PMID 25926821 DOI: 10.3389/Fmicb.2015.00277  0.308
2013 Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, et al. The COMBREX project: design, methodology, and initial results. Plos Biology. 11: e1001638. PMID 24013487 DOI: 10.1371/Journal.Pbio.1001638  0.585
2013 Harcombe WR, Delaney NF, Leiby N, Klitgord N, Marx CJ. The ability of flux balance analysis to predict evolution of central metabolism scales with the initial distance to the optimum. Plos Computational Biology. 9: e1003091. PMID 23818838 DOI: 10.1371/Journal.Pcbi.1003091  0.36
2013 Rajeev L, da Rocha UN, Klitgord N, Luning EG, Fortney J, Axen SD, Shih PM, Bouskill NJ, Bowen BP, Kerfeld CA, Garcia-Pichel F, Brodie EL, Northen TR, Mukhopadhyay A. Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust. The Isme Journal. 7: 2178-91. PMID 23739051 DOI: 10.1038/Ismej.2013.83  0.347
2012 Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S, Stine OC, Hasturk H, Kasif S, Segrè D, Pop M, et al. Deep sequencing of the oral microbiome reveals signatures of periodontal disease Plos One. 7. PMID 22675498 DOI: 10.1371/Journal.Pone.0037919  0.599
2012 Beg QK, Zampieri M, Klitgord N, Collins SB, Altafini C, Serres MH, Segrè D. Detection of transcriptional triggers in the dynamics of microbial growth: application to the respiratorily versatile bacterium Shewanella oneidensis. Nucleic Acids Research. 40: 7132-49. PMID 22638572 DOI: 10.1093/nar/gks467  0.655
2012 Simonis N, Rual JF, Lemmens I, Boxus M, Hirozane-Kishikawa T, Gatot JS, Dricot A, Hao T, Vertommen D, Legros S, Daakour S, Klitgord N, Martin M, Willaert JF, Dequiedt F, et al. Host-pathogen interactome mapping for HTLV-1 and -2 retroviruses. Retrovirology. 9: 26. PMID 22458338 DOI: 10.1186/1742-4690-9-26  0.308
2011 Klitgord N, Segrè D. Ecosystems biology of microbial metabolism. Current Opinion in Biotechnology. 22: 541-6. PMID 21592777 DOI: 10.1016/J.Copbio.2011.04.018  0.642
2011 Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, et al. COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Research. 39: D11-4. PMID 21097892 DOI: 10.1093/Nar/Gkq1168  0.587
2010 Klitgord N, Segrè D. Environments that induce synthetic microbial ecosystems. Plos Computational Biology. 6: e1001002. PMID 21124952 DOI: 10.1371/Journal.Pcbi.1001002  0.63
2010 Yan H, Venkatesan K, Beaver JE, Klitgord N, Yildirim MA, Hao T, Hill DE, Cusick ME, Perrimon N, Roth FP, Vidal M. A genome-wide gene function prediction resource for Drosophila melanogaster. Plos One. 5: e12139. PMID 20711346 DOI: 10.1371/Journal.Pone.0012139  0.347
2010 Schütte M, Klitgord N, Segrè D, Ebenhöh O. Co-evolution of metabolism and protein sequences. Genome Informatics. International Conference On Genome Informatics. 22: 156-66. PMID 20238426  0.602
2010 Klitgord N, Segrè D. The importance of compartmentalization in metabolic flux models: yeast as an ecosystem of organelles. Genome Informatics. International Conference On Genome Informatics. 22: 41-55. PMID 20238418  0.622
2010 Schuette M, Klitgord N, Segre D, Ebenhoeh O. Co-evolution of metabolism and protein sequences Genome Informatics. 22: 156-166. DOI: 10.1142/9781848165786_0013  0.62
2009 Zhong Q, Simonis N, Li QR, Charloteaux B, Heuze F, Klitgord N, Tam S, Yu H, Venkatesan K, Mou D, Swearingen V, Yildirim MA, Yan H, Dricot A, Szeto D, et al. Edgetic perturbation models of human inherited disorders. Molecular Systems Biology. 5: 321. PMID 19888216 DOI: 10.1038/Msb.2009.80  0.334
2009 Simonis N, Rual JF, Carvunis AR, Tasan M, Lemmens I, Hirozane-Kishikawa T, Hao T, Sahalie JM, Venkatesan K, Gebreab F, Cevik S, Klitgord N, Fan C, Braun P, Li N, et al. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Nature Methods. 6: 47-54. PMID 19123269 DOI: 10.1038/Nmeth.1279  0.345
2009 Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, ... ... Klitgord N, et al. An empirical framework for binary interactome mapping. Nature Methods. 6: 83-90. PMID 19060904 DOI: 10.1038/Nmeth.1280  0.318
2008 Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, et al. A protein domain-based interactome network for C. elegans early embryogenesis. Cell. 134: 534-45. PMID 18692475 DOI: 10.1016/J.Cell.2008.07.009  0.312
2008 Li QR, Carvunis AR, Yu H, Han JD, Zhong Q, Simonis N, Tam S, Hao T, Klitgord NJ, Dupuy D, Mou D, Wapinski I, Regev A, Hill DE, Cusick ME, et al. Revisiting the Saccharomyces cerevisiae predicted ORFeome. Genome Research. 18: 1294-303. PMID 18502943 DOI: 10.1101/Gr.076661.108  0.308
2008 Imielinski M, Klitgord N, Belta C. Investigating the genomic basis of metabolic robustness through in silico flux analysis Proceedings of the Ieee Conference On Decision and Control. 793-798. DOI: 10.1109/CDC.2008.4739459  0.312
2005 Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, et al. Towards a proteome-scale map of the human protein-protein interaction network. Nature. 437: 1173-8. PMID 16189514 DOI: 10.1038/Nature04209  0.355
2005 Cusick ME, Klitgord N, Vidal M, Hill DE. Interactome: gateway into systems biology. Human Molecular Genetics. 14: R171-81. PMID 16162640 DOI: 10.1093/Hmg/Ddi335  0.362
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