Katja Schwartz - Publications

2003- Genetics Stanford University, Palo Alto, CA 

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Kinnersley M, Schwartz K, Yang DD, Sherlock G, Rosenzweig F. Evolutionary dynamics and structural consequences of de novo beneficial mutations and mutant lineages arising in a constant environment. Bmc Biology. 19: 20. PMID 33541358 DOI: 10.1186/s12915-021-00954-0  0.563
2018 Blundell JR, Schwartz K, Francois D, Fisher DS, Sherlock G, Levy SF. The dynamics of adaptive genetic diversity during the early stages of clonal evolution. Nature Ecology & Evolution. PMID 30598529 DOI: 10.1038/S41559-018-0758-1  0.596
2018 Ropars J, Maufrais C, Diogo D, Marcet-Houben M, Perin A, Sertour N, Mosca K, Permal E, Laval G, Bouchier C, Ma L, Schwartz K, Voelz K, May RC, Poulain J, et al. Gene flow contributes to diversification of the major fungal pathogen Candida albicans. Nature Communications. 9: 2253. PMID 29884848 DOI: 10.1038/S41467-018-04787-4  0.601
2016 Feri A, Loll-Krippleber R, Commere PH, Maufrais C, Sertour N, Schwartz K, Sherlock G, Bougnoux ME, d'Enfert C, Legrand M. Analysis of Repair Mechanisms following an Induced Double-Strand Break Uncovers Recessive Deleterious Alleles in the Candida albicans Diploid Genome. Mbio. 7. PMID 27729506 DOI: 10.1128/Mbio.01109-16  0.628
2016 Schwartz K, Sherlock G. High-Throughput Yeast Strain Sequencing. Cold Spring Harbor Protocols. 2016: pdb.top077651. PMID 27698244 DOI: 10.1101/Pdb.Top077651  0.622
2016 Schwartz K, Sherlock G. Preparation of Yeast DNA Sequencing Libraries. Cold Spring Harbor Protocols. 2016: pdb.prot088930. PMID 27698239 DOI: 10.1101/Pdb.Prot088930  0.595
2015 Schep AN, Buenrostro JD, Denny SK, Schwartz K, Sherlock G, Greenleaf WJ. Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions. Genome Research. PMID 26314830 DOI: 10.1101/Gr.192294.115  0.55
2014 Chiotti KE, Kvitek DJ, Schmidt KH, Koniges G, Schwartz K, Donckels EA, Rosenzweig F, Sherlock G. The Valley-of-Death: reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment. Genomics. 104: 431-7. PMID 25449178 DOI: 10.1016/J.Ygeno.2014.10.011  0.581
2013 Muzzey D, Schwartz K, Weissman JS, Sherlock G. Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Genome Biology. 14: R97. PMID 24025428 DOI: 10.1186/Gb-2013-14-9-R97  0.636
2012 Schwartz K, Wenger JW, Dunn B, Sherlock G. APJ1 and GRE3 homologs work in concert to allow growth in xylose in a natural Saccharomyces sensu stricto hybrid yeast. Genetics. 191: 621-32. PMID 22426884 DOI: 10.1534/Genetics.112.140053  0.616
2011 Risso D, Schwartz K, Sherlock G, Dudoit S. GC-content normalization for RNA-Seq data. Bmc Bioinformatics. 12: 480. PMID 22177264 DOI: 10.1186/1471-2105-12-480  0.537
2010 Kao KC, Schwartz K, Sherlock G. A genome-wide analysis reveals no nuclear dobzhansky-muller pairs of determinants of speciation between S. cerevisiae and S. paradoxus, but suggests more complex incompatibilities. Plos Genetics. 6: e1001038. PMID 20686707 DOI: 10.1371/Journal.Pgen.1001038  0.587
2010 Wenger JW, Schwartz K, Sherlock G. Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae. Plos Genetics. 6: e1000942. PMID 20485559 DOI: 10.1371/Journal.Pgen.1000942  0.634
2009 Elrod SL, Chen SM, Schwartz K, Shuster EO. Optimizing sporulation conditions for different Saccharomyces cerevisiae strain backgrounds. Methods in Molecular Biology (Clifton, N.J.). 557: 21-6. PMID 19799173 DOI: 10.1007/978-1-59745-527-5_2  0.332
2006 Fisk DG, Ball CA, Dolinski K, Engel SR, Hong EL, Issel-Tarver L, Schwartz K, Sethuraman A, Botstein D, Cherry JM. Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast (Chichester, England). 23: 857-65. PMID 17001629 DOI: 10.1002/Yea.1400  0.401
2000 Schwartz K, Richards K, Botstein D. BIM1 encodes a microtubule-binding protein in yeast. Molecular Biology of the Cell. 8: 2677-91. PMID 9398684 DOI: 10.1091/Mbc.8.12.2677  0.391
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