| Year |
Citation |
Score |
| 2023 |
Law STS, Yu Y, Nong W, So WL, Li Y, Swale T, Ferrier DEK, Qiu J, Qian P, Hui JHL. The genome of the deep-sea anemone sp. contains a mega-array of ANTP-class homeobox genes. Proceedings. Biological Sciences. 290: 20231563. PMID 37876192 DOI: 10.1098/rspb.2023.1563 |
0.613 |
|
| 2022 |
Torres-Aguila NP, Salonna M, Hoppler S, Ferrier DEK. Evolutionary diversification of the canonical Wnt signaling effector TCF/LEF in chordates. Development, Growth & Differentiation. PMID 35048372 DOI: 10.1111/dgd.12771 |
0.479 |
|
| 2020 |
Li Y, Nong W, Baril T, Yip HY, Swale T, Hayward A, Ferrier DEK, Hui JHL. Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome. Bmc Genomics. 21: 713. PMID 33059600 DOI: 10.1186/s12864-020-07027-6 |
0.629 |
|
| 2020 |
Aase-Remedios ME, Coll-Lladó C, Ferrier DEK. More than one-to-four via 2R: evidence of an independent amphioxus expansion and two-gene ancestral vertebrate state for MyoD-related Muscle Regulatory Factors (MRFs). Molecular Biology and Evolution. PMID 32520990 DOI: 10.1093/molbev/msaa147 |
0.521 |
|
| 2018 |
Szabó R, Ferrier DEK. Two more Posterior Hox genes and Hox cluster dispersal in echinoderms. Bmc Evolutionary Biology. 18: 203. PMID 30587111 DOI: 10.1186/s12862-018-1307-x |
0.474 |
|
| 2018 |
Hudson C, Esposito R, Palladino A, Staiano L, Ferrier D, Faure E, Lemaire P, Yasuo H, Spagnuolo A. Transcriptional regulation of the Ciona Gsx gene in the neural plate. Developmental Biology. PMID 30583796 DOI: 10.1016/J.Ydbio.2018.12.013 |
0.358 |
|
| 2018 |
Marlétaz F, Firbas PN, Maeso I, Tena JJ, Bogdanovic O, Perry M, Wyatt CDR, de la Calle-Mustienes E, Bertrand S, Burguera D, Acemel RD, van Heeringen SJ, Naranjo S, Herrera-Ubeda C, Skvortsova K, ... ... Ferrier DEK, et al. Amphioxus functional genomics and the origins of vertebrate gene regulation. Nature. PMID 30464347 DOI: 10.1038/S41586-018-0734-6 |
0.577 |
|
| 2018 |
Ferrier DEK. Horizons in evolutionary genomics: an interview with David Ferrier. Bmc Biology. 16: 124. PMID 30382837 DOI: 10.1186/s12915-018-0587-3 |
0.453 |
|
| 2018 |
Ferrier DEK, Sogabe S. Genome Biology: Unconventional DNA Repair in an Extreme Genome. Current Biology : Cb. 28: R1208-R1210. PMID 30352193 DOI: 10.1016/j.cub.2018.09.004 |
0.36 |
|
| 2018 |
Barton-Owen T, Szabó R, Somorjai IML, Ferrier DEK. A revised spiralian homeobox gene classification incorporating new polychaete transcriptomes reveals a diverse TALE class and a divergent Hox gene. Genome Biology and Evolution. PMID 29986009 DOI: 10.1093/gbe/evy144 |
0.755 |
|
| 2018 |
Barton-Owen TB, Ferrier DEK, Somorjai IML. Pax3/7 duplicated and diverged independently in amphioxus, the basal chordate lineage. Scientific Reports. 8: 9414. PMID 29925900 DOI: 10.1038/s41598-018-27700-x |
0.723 |
|
| 2018 |
Garstang MG, Ferrier DEK. Amphioxus SYCP1: a case of retrogene replacement and co-option of regulatory elements adjacent to the ParaHox cluster. Development Genes and Evolution. PMID 29297095 DOI: 10.1007/s00427-017-0600-9 |
0.48 |
|
| 2017 |
MacKintosh C, Ferrier DEK. Recent advances in understanding the roles of whole genome duplications in evolution. F1000research. 6: 1623. PMID 28928963 DOI: 10.12688/F1000Research.11792.1 |
0.484 |
|
| 2016 |
Garstang MG, Osborne PW, Ferrier DE. TCF/Lef regulates the Gsx ParaHox gene in central nervous system development in chordates. Bmc Evolutionary Biology. 16: 57. PMID 26940763 DOI: 10.1186/s12862-016-0614-3 |
0.439 |
|
| 2015 |
Ferrier DE. The origin of the Hox/ParaHox genes, the Ghost Locus hypothesis and the complexity of the first animal. Briefings in Functional Genomics. PMID 26637506 DOI: 10.1093/bfgp/elv056 |
0.356 |
|
| 2015 |
Szabó R, Ferrier DE. Another biomineralising protostome with an msp130 gene and conservation of msp130 gene structure across Bilateria. Evolution & Development. 17: 195-7. PMID 25963197 DOI: 10.1111/ede.12122 |
0.484 |
|
| 2014 |
Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005 |
0.63 |
|
| 2014 |
Fortunato SA, Adamski M, Ramos OM, Leininger S, Liu J, Ferrier DE, Adamska M. Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes. Nature. 514: 620-3. PMID 25355364 DOI: 10.1038/nature13881 |
0.582 |
|
| 2013 |
Barker D, Ferrier DE, Holland PW, Mitchell JB, Plaisier H, Ritchie MG, Smart SD. 4273Ï€: bioinformatics education on low cost ARM hardware. Bmc Bioinformatics. 14: 243. PMID 23937194 DOI: 10.1186/1471-2105-14-243 |
0.422 |
|
| 2013 |
Garstang M, Ferrier DE. Time is of the essence for ParaHox homeobox gene clustering. Bmc Biology. 11: 72. PMID 23803337 DOI: 10.1186/1741-7007-11-72 |
0.432 |
|
| 2012 |
Mendivil Ramos O, Barker D, Ferrier DE. Ghost loci imply Hox and ParaHox existence in the last common ancestor of animals. Current Biology : Cb. 22: 1951-6. PMID 23022064 DOI: 10.1016/j.cub.2012.08.023 |
0.56 |
|
| 2012 |
Mendivil Ramos O, Ferrier DE. Mechanisms of Gene Duplication and Translocation and Progress towards Understanding Their Relative Contributions to Animal Genome Evolution. International Journal of Evolutionary Biology. 2012: 846421. PMID 22919542 DOI: 10.1155/2012/846421 |
0.527 |
|
| 2012 |
Hui JH, McDougall C, Monteiro AS, Holland PW, Arendt D, Balavoine G, Ferrier DE. Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization. Molecular Biology and Evolution. 29: 157-65. PMID 21727239 DOI: 10.1093/Molbev/Msr175 |
0.701 |
|
| 2011 |
McDougall C, Korchagina N, Tobin JL, Ferrier DE. Annelid Distal-less/Dlx duplications reveal varied post-duplication fates. Bmc Evolutionary Biology. 11: 241. PMID 21846345 DOI: 10.1186/1471-2148-11-241 |
0.606 |
|
| 2010 |
Ferrier DE. Evolution of Hox complexes. Advances in Experimental Medicine and Biology. 689: 91-100. PMID 20795324 DOI: 10.1007/978-1-4419-6673-5_6 |
0.49 |
|
| 2010 |
Butts T, Holland PW, Ferrier DE. Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression. Proceedings. Biological Sciences / the Royal Society. 277: 3381-9. PMID 20554554 DOI: 10.1098/Rspb.2010.0647 |
0.677 |
|
| 2010 |
Ferrier DE, Martinez P. Evolutionary Developmental Genomics: at the 2008 meeting of the European Society for Evolutionary Developmental Biology. Genomics. 95: 247-9. PMID 19615437 DOI: 10.1016/J.Ygeno.2009.07.001 |
0.461 |
|
| 2009 |
Hui JH, Raible F, Korchagina N, Dray N, Samain S, Magdelenat G, Jubin C, Segurens B, Balavoine G, Arendt D, Ferrier DE. Features of the ancestral bilaterian inferred from Platynereis dumerilii ParaHox genes. Bmc Biology. 7: 43. PMID 19627570 DOI: 10.1186/1741-7007-7-43 |
0.508 |
|
| 2009 |
Osborne PW, Benoit G, Laudet V, Schubert M, Ferrier DE. Differential regulation of ParaHox genes by retinoic acid in the invertebrate chordate amphioxus (Branchiostoma floridae). Developmental Biology. 327: 252-62. PMID 19103191 DOI: 10.1016/J.Ydbio.2008.11.027 |
0.395 |
|
| 2008 |
Hui JH, Holland PW, Ferrier DE. Do cnidarians have a ParaHox cluster? Analysis of synteny around a Nematostella homeobox gene cluster. Evolution & Development. 10: 725-30. PMID 19021743 DOI: 10.1111/J.1525-142X.2008.00286.X |
0.619 |
|
| 2008 |
Takatori N, Butts T, Candiani S, Pestarino M, Ferrier DE, Saiga H, Holland PW. Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae. Development Genes and Evolution. 218: 579-90. PMID 18797923 DOI: 10.1007/S00427-008-0245-9 |
0.693 |
|
| 2008 |
Putnam NH, Butts T, Ferrier DE, Furlong RF, Hellsten U, Kawashima T, Robinson-Rechavi M, Shoguchi E, Terry A, Yu JK, Benito-Gutiérrez EL, Dubchak I, Garcia-Fernà ndez J, Gibson-Brown JJ, Grigoriev IV, et al. The amphioxus genome and the evolution of the chordate karyotype. Nature. 453: 1064-71. PMID 18563158 DOI: 10.1038/Nature06967 |
0.761 |
|
| 2008 |
Holland LZ, Albalat R, Azumi K, Benito-Gutiérrez E, Blow MJ, Bronner-Fraser M, Brunet F, Butts T, Candiani S, Dishaw LJ, Ferrier DE, Garcia-Fernà ndez J, Gibson-Brown JJ, Gissi C, Godzik A, et al. The amphioxus genome illuminates vertebrate origins and cephalochordate biology. Genome Research. 18: 1100-11. PMID 18562680 DOI: 10.1101/Gr.073676.107 |
0.795 |
|
| 2008 |
Butts T, Holland PW, Ferrier DE. The urbilaterian Super-Hox cluster. Trends in Genetics : Tig. 24: 259-62. PMID 18472178 DOI: 10.1016/J.Tig.2007.09.006 |
0.656 |
|
| 2008 |
Richards S, Gibbs RA, Weinstock GM, Brown SJ, Denell R, Beeman RW, Gibbs R, Beeman RW, Brown SJ, Bucher G, Friedrich M, Grimmelikhuijzen CJ, Klingler M, Lorenzen M, ... ... Ferrier DE, et al. The genome of the model beetle and pest Tribolium castaneum. Nature. 452: 949-55. PMID 18362917 DOI: 10.1038/Nature06784 |
0.465 |
|
| 2008 |
Amemiya CT, Prohaska SJ, Hill-Force A, Cook A, Wasserscheid J, Ferrier DE, Pascual-Anaya J, Garcia-Fernà ndez J, Dewar K, Stadler PF. The amphioxus Hox cluster: characterization, comparative genomics, and evolution. Journal of Experimental Zoology. Part B, Molecular and Developmental Evolution. 310: 465-77. PMID 18351584 DOI: 10.1002/Jez.B.21213 |
0.656 |
|
| 2005 |
Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier D, Benes V, de Jong P, Weissenbach J, Bork P, Arendt D. Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Science (New York, N.Y.). 310: 1325-6. PMID 16311335 DOI: 10.1126/Science.1119089 |
0.579 |
|
| 2004 |
Ferrier DE. Hox genes: Did the vertebrate ancestor have a Hox14? Current Biology : Cb. 14: R210-1. PMID 15028241 DOI: 10.1016/j.cub.2004.02.025 |
0.354 |
|
| 2003 |
Ferrier DE, Minguillón C. Evolution of the Hox/ParaHox gene clusters. The International Journal of Developmental Biology. 47: 605-11. PMID 14756336 |
0.383 |
|
| 2002 |
Ferrier DE, Holland PW. Ciona intestinalis ParaHox genes: evolution of Hox/ParaHox cluster integrity, developmental mode, and temporal colinearity. Molecular Phylogenetics and Evolution. 24: 412-7. PMID 12220984 DOI: 10.1016/S1055-7903(02)00204-X |
0.612 |
|
| 2002 |
Minguillón C, Ferrier DE, Cebrián C, Garcia-Fernà ndez J. Gene duplications in the prototypical cephalochordate amphioxus. Gene. 287: 121-8. PMID 11992730 DOI: 10.1016/S0378-1119(01)00828-9 |
0.782 |
|
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