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Ji Qi - Publications

Affiliations: 
Fudan university, Shanghai, Shanghai Shi, China 
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Zhang T, Huang W, Zhang L, Li DZ, Qi J, Ma H. Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages. Nature Communications. 15: 3305. PMID 38632270 DOI: 10.1038/s41467-024-47428-9  0.431
2022 Chen D, Zhang T, Chen Y, Ma H, Qi J. Tree2GD: A Phylogenomic Method to Detect Large Scale Gene Duplication Events. Bioinformatics (Oxford, England). PMID 36218394 DOI: 10.1093/bioinformatics/btac669  0.437
2022 Li J, Shen J, Wang R, Chen Y, Zhang T, Wang H, Guo C, Qi J. The nearly complete assembly of Cercis chinensis genome and Fabaceae phylogenomic studies provide insights into new gene evolution. Plant Communications. 100422. PMID 35957520 DOI: 10.1016/j.xplc.2022.100422  0.346
2021 Zhao Y, Zhang R, Jiang K, Qi J, Hu Y, Guo J, Zhu R, Zhang T, Egan AN, Yi TS, Huang CH, Ma H. Nuclear Phylotranscriptomics/Phylogenomics Support Numerous Polyploidization Events and Hypotheses for the Evolution of Rhizobial Nitrogen-Fixing Symbiosis in Fabaceae. Molecular Plant. PMID 33631421 DOI: 10.1016/j.molp.2021.02.006  0.428
2020 Fu Y, Li M, Zhang S, Yang Q, Zhu E, You C, Qi J, Ma H, Chang F. Analyses of functional conservation and divergence reveal requirement of bHLH010/089/091 for pollen development at elevated temperature in Arabidopsis. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 47: 477-492. PMID 33393464 DOI: 10.1016/J.Jgg.2020.09.001  0.389
2020 Zhang C, Zhang T, Luebert F, Xiang Y, Huang CH, Hu Y, Rees M, Frohlich MW, Qi J, Weigend M, Ma H. Asterid phylogenomics/phylotranscriptomics uncover morphological evolutionary histories and support phylogenetic placement for numerous whole genome duplications. Molecular Biology and Evolution. PMID 32652014 DOI: 10.1093/Molbev/Msaa160  0.385
2019 Huang CH, Qi X, Chen D, Qi J, Ma H. Recurrent genome duplication events likely contributed to both the ancient and recent rise of ferns. Journal of Integrative Plant Biology. PMID 31628713 DOI: 10.1111/Jipb.12877  0.427
2018 Qi X, Kuo LY, Guo C, Li H, Li Z, Qi J, Wang L, Hu Y, Xiang J, Zhang C, Guo J, Huang CH, Ma H. A well-resolved fern nuclear phylogeny reveals the evolution history of numerous transcription factor families. Molecular Phylogenetics and Evolution. PMID 29981932 DOI: 10.1016/J.Ympev.2018.06.043  0.368
2018 Ren R, Wang H, Guo C, Zhang N, Zeng L, Chen Y, Ma H, Qi J. Wide-Spread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms. Molecular Plant. PMID 29317285 DOI: 10.1016/J.Molp.2018.01.002  0.478
2018 Ren R, Wang H, Guo C, Zhang N, Zeng L, Chen Y, Ma H, Qi J. Wide-Spread Whole Genome Duplications Contribute to Genome Complexity and Species Diversity in Angiosperms. Molecular Plant. PMID 29317285 DOI: 10.1016/J.Molp.2018.01.002  0.478
2016 Huang CH, Zhang C, Liu M, Hu Y, Gao T, Qi J, Ma H. Multiple polyploidization events across Asteraceae with two nested events in the early history revealed by nuclear phylogenomics. Molecular Biology and Evolution. PMID 27604225 DOI: 10.1093/Molbev/Msw157  0.424
2016 Huang CH, Zhang C, Liu M, Hu Y, Gao T, Qi J, Ma H. Multiple polyploidization events across Asteraceae with two nested events in the early history revealed by nuclear phylogenomics. Molecular Biology and Evolution. PMID 27604225 DOI: 10.1093/Molbev/Msw157  0.424
2015 Zhu E, You C, Wang S, Cui J, Niu B, Wang Y, Qi J, Ma H, Chang F. The DYT1-interacting proteins bHLH010, bHLH089, and bHLH091 are redundantly required for Arabidopsis anther development and transcriptome. The Plant Journal : For Cell and Molecular Biology. PMID 26216374 DOI: 10.1111/Tpj.12942  0.385
2015 Ye N, Zhang X, Miao M, Fan X, Zheng Y, Xu D, Wang J, Zhou L, Wang D, Gao Y, Wang Y, Shi W, Ji P, Li D, Guan Z, ... ... Qi J, et al. Saccharina genomes provide novel insight into kelp biology. Nature Communications. 6: 6986. PMID 25908475 DOI: 10.1038/Ncomms7986  0.308
2015 Yang H, Chang F, You C, Cui J, Zhu G, Wang L, Zheng Y, Qi J, Ma H. Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 81: 268-81. PMID 25404462 DOI: 10.1111/Tpj.12726  0.395
2015 Yang H, Chang F, You C, Cui J, Zhu G, Wang L, Zheng Y, Qi J, Ma H. Whole-genome DNA methylation patterns and complex associations with gene structure and expression during flower development in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 81: 268-81. PMID 25404462 DOI: 10.1111/Tpj.12726  0.395
2014 Qi J, Chen Y, Copenhaver GP, Ma H. Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping. Proceedings of the National Academy of Sciences of the United States of America. 111: 10007-12. PMID 24958856 DOI: 10.1073/Pnas.1321897111  0.391
2014 Qi J, Chen Y, Copenhaver GP, Ma H. Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping. Proceedings of the National Academy of Sciences of the United States of America. 111: 10007-12. PMID 24958856 DOI: 10.1073/Pnas.1321897111  0.391
2014 Wang L, Cao C, Ma Q, Zeng Q, Wang H, Cheng Z, Zhu G, Qi J, Ma H, Nian H, Wang Y. RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications. Bmc Plant Biology. 14: 169. PMID 24939556 DOI: 10.1186/1471-2229-14-169  0.447
2014 Wang L, Cao C, Ma Q, Zeng Q, Wang H, Cheng Z, Zhu G, Qi J, Ma H, Nian H, Wang Y. RNA-seq analyses of multiple meristems of soybean: novel and alternative transcripts, evolutionary and functional implications. Bmc Plant Biology. 14: 169. PMID 24939556 DOI: 10.1186/1471-2229-14-169  0.447
2014 Wang H, You C, Chang F, Wang Y, Wang L, Qi J, Ma H. Alternative splicing during Arabidopsis flower development results in constitutive and stage-regulated isoforms. Frontiers in Genetics. 5: 25. PMID 24575124 DOI: 10.3389/Fgene.2014.00025  0.406
2014 Wang H, You C, Chang F, Wang Y, Wang L, Qi J, Ma H. Alternative splicing during Arabidopsis flower development results in constitutive and stage-regulated isoforms. Frontiers in Genetics. 5: 25. PMID 24575124 DOI: 10.3389/Fgene.2014.00025  0.406
2012 Lu P, Han X, Qi J, Yang J, Wijeratne AJ, Li T, Ma H. Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis. Genome Research. 22: 508-18. PMID 22106370 DOI: 10.1101/Gr.127522.111  0.444
2012 Lu P, Han X, Qi J, Yang J, Wijeratne AJ, Li T, Ma H. Analysis of Arabidopsis genome-wide variations before and after meiosis and meiotic recombination by resequencing Landsberg erecta and all four products of a single meiosis. Genome Research. 22: 508-18. PMID 22106370 DOI: 10.1101/Gr.127522.111  0.444
2009 Qi J, Wijeratne AJ, Tomsho LP, Hu Y, Schuster SC, Ma H. Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae. Bmc Genomics. 10: 475. PMID 19832984 DOI: 10.1186/1471-2164-10-475  0.424
2009 Qi J, Wijeratne AJ, Tomsho LP, Hu Y, Schuster SC, Ma H. Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae. Bmc Genomics. 10: 475. PMID 19832984 DOI: 10.1186/1471-2164-10-475  0.424
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