| Year |
Citation |
Score |
| 2024 |
Lan F, Saba J, Ross TD, Zhou Z, Krauska K, Anantharaman K, Landick R, Venturelli OS. Massively parallel single-cell sequencing of diverse microbial populations. Nature Methods. PMID 38233503 DOI: 10.1038/s41592-023-02157-7 |
0.648 |
|
| 2023 |
Zhou Z, Martin C, Kosmopoulos JC, Anantharaman K. ViWrap: A modular pipeline to identify, bin, classify, and predict viral-host relationships for viruses from metagenomes. Imeta. 2. PMID 38152703 DOI: 10.1002/imt2.118 |
0.683 |
|
| 2023 |
Liu Y, Cheng YY, Zhou Z, Vivas EI, Warren MF, Rey FE, Anantharaman K, Venturelli OS. Shaping human gut community assembly and butyrate production by controlling the arginine dihydrolase pathway. Biorxiv : the Preprint Server For Biology. PMID 37986770 DOI: 10.1101/2023.01.10.523442 |
0.681 |
|
| 2023 |
Zhou Z, Tran PQ, Adams AM, Kieft K, Breier JA, Fortunato CS, Sheik CS, Huber JA, Li M, Dick GJ, Anantharaman K. Sulfur cycling connects microbiomes and biogeochemistry in deep-sea hydrothermal plumes. The Isme Journal. PMID 37179442 DOI: 10.1038/s41396-023-01421-0 |
0.757 |
|
| 2023 |
Kuppa Baskaran DK, Umale S, Zhou Z, Raman K, Anantharaman K. Metagenome-based metabolic modelling predicts unique microbial interactions in deep-sea hydrothermal plume microbiomes. Isme Communications. 3: 42. PMID 37120693 DOI: 10.1038/s43705-023-00242-8 |
0.714 |
|
| 2023 |
Zhou Z, Martin C, Kosmopoulos JC, Anantharaman K. ViWrap: A modular pipeline to identify, bin, classify, and predict viral-host relationships for viruses from metagenomes. Biorxiv : the Preprint Server For Biology. PMID 36778280 DOI: 10.1101/2023.01.30.526317 |
0.683 |
|
| 2023 |
Cheng YY, Zhou Z, Papadopoulos JM, Zuke JD, Falbel TG, Anantharaman K, Burton BM, Venturelli OS. Efficient plasmid transfer via natural competence in a microbial co-culture. Molecular Systems Biology. e11406. PMID 36714980 DOI: 10.15252/msb.202211406 |
0.603 |
|
| 2022 |
Zhou Z, St John E, Anantharaman K, Reysenbach AL. Global patterns of diversity and metabolism of microbial communities in deep-sea hydrothermal vent deposits. Microbiome. 10: 241. PMID 36572924 DOI: 10.1186/s40168-022-01424-7 |
0.711 |
|
| 2022 |
Zhou Z, Meng H, Gu W, Li J, Deng M, Gu JD. High-throughput sequencing reveals the main drivers of niche-differentiation of bacterial community in the surface sediments of the northern South China sea. Marine Environmental Research. 178: 105641. PMID 35594805 DOI: 10.1016/j.marenvres.2022.105641 |
0.365 |
|
| 2022 |
Pan J, Xu W, Zhou Z, Shao Z, Dong C, Liu L, Luo Z, Li M. Correction to: Genome-resolved evidence for functionally redundant communities and novel nitrogen fixers in the deyin-1 hydrothermal field, Mid-Atlantic Ridge. Microbiome. 10: 40. PMID 35246231 DOI: 10.1186/s40168-022-01253-8 |
0.347 |
|
| 2022 |
Zhou Z, Tran PQ, Breister AM, Liu Y, Kieft K, Cowley ES, Karaoz U, Anantharaman K. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks. Microbiome. 10: 33. PMID 35172890 DOI: 10.1186/s40168-021-01213-8 |
0.783 |
|
| 2022 |
Pan J, Xu W, Zhou Z, Shao Z, Dong C, Liu L, Luo Z, Li M. Genome-resolved evidence for functionally redundant communities and novel nitrogen fixers in the deyin-1 hydrothermal field, Mid-Atlantic Ridge. Microbiome. 10: 8. PMID 35045876 DOI: 10.1186/s40168-021-01202-x |
0.371 |
|
| 2022 |
Feng J, Qian Y, Zhou Z, Ertmer S, Vivas EI, Lan F, Hamilton JJ, Rey FE, Anantharaman K, Venturelli OS. Polysaccharide utilization loci in Bacteroides determine population fitness and community-level interactions. Cell Host & Microbe. PMID 34995484 DOI: 10.1016/j.chom.2021.12.006 |
0.677 |
|
| 2021 |
Kieft K, Breister AM, Huss P, Linz AM, Zanetakos E, Zhou Z, Rahlff J, Esser SP, Probst AJ, Raman S, Roux S, Anantharaman K. Virus-associated organosulfur metabolism in human and environmental systems. Cell Reports. 36: 109471. PMID 34348151 DOI: 10.1016/j.celrep.2021.109471 |
0.761 |
|
| 2021 |
Kieft K, Zhou Z, Anderson RE, Buchan A, Campbell BJ, Hallam SJ, Hess M, Sullivan MB, Walsh DA, Roux S, Anantharaman K. Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages. Nature Communications. 12: 3503. PMID 34108477 DOI: 10.1038/s41467-021-23698-5 |
0.776 |
|
| 2020 |
Yin X, Cai M, Liu Y, Zhou G, Richter-Heitmann T, Aromokeye DA, Kulkarni AC, Nimzyk R, Cullhed H, Zhou Z, Pan J, Yang Y, Gu JD, Elvert M, Li M, et al. Subgroup level differences of physiological activities in marine Lokiarchaeota. The Isme Journal. PMID 33149207 DOI: 10.1038/s41396-020-00818-5 |
0.339 |
|
| 2020 |
Zhou Z, Liu Y, Pan J, Cron BR, Toner BM, Anantharaman K, Breier JA, Dick GJ, Li M. Gammaproteobacteria mediating utilization of methyl-, sulfur- and petroleum organic compounds in deep ocean hydrothermal plumes. The Isme Journal. PMID 32820229 DOI: 10.1038/S41396-020-00745-5 |
0.72 |
|
| 2020 |
Kieft K, Zhou Z, Anantharaman K. VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences. Microbiome. 8: 90. PMID 32522236 DOI: 10.1186/s40168-020-00867-0 |
0.774 |
|
| 2020 |
Zhou Z, Tran PQ, Kieft K, Anantharaman K. Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation. The Isme Journal. PMID 32393808 DOI: 10.1038/s41396-020-0669-4 |
0.775 |
|
| 2020 |
Pan J, Zhou Z, Béjà O, Cai M, Yang Y, Liu Y, Gu JD, Li M. Genomic and transcriptomic evidence of light-sensing, porphyrin biosynthesis, Calvin-Benson-Bassham cycle, and urea production in Bathyarchaeota. Microbiome. 8: 43. PMID 32234071 DOI: 10.1186/S40168-020-00820-1 |
0.413 |
|
| 2020 |
Cai M, Liu Y, Yin X, Zhou Z, Friedrich MW, Richter-Heitmann T, Nimzyk R, Kulkarni A, Wang X, Li W, Pan J, Yang Y, Gu JD, Li M. Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation. Science China. Life Sciences. PMID 32201928 DOI: 10.1007/s11427-020-1679-1 |
0.361 |
|
| 2020 |
Zhou Z, Liu Y, Xu W, Pan J, Luo ZH, Li M. Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of in Hydrothermal Sediment. Msystems. 5. PMID 31911466 DOI: 10.1128/mSystems.00795-19 |
0.524 |
|
| 2019 |
Pan J, Chen Y, Wang Y, Zhou Z, Li M. Vertical Distribution of Bathyarchaeotal Communities in Mangrove Wetlands Suggests Distinct Niche Preference of Bathyarchaeota Subgroup 6. Microbial Ecology. PMID 30612184 DOI: 10.1007/s00248-018-1309-7 |
0.368 |
|
| 2018 |
Zhou Z, Liu Y, Lloyd KG, Pan J, Yang Y, Gu JD, Li M. Genomic and transcriptomic insights into the ecology and metabolism of benthic archaeal cosmopolitan, Thermoprofundales (MBG-D archaea). The Isme Journal. PMID 30514872 DOI: 10.1038/S41396-018-0321-8 |
0.356 |
|
| 2018 |
Liu X, Li M, Castelle CJ, Probst AJ, Zhou Z, Pan J, Liu Y, Banfield JF, Gu JD. Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages. Microbiome. 6: 102. PMID 29884244 DOI: 10.1186/S40168-018-0488-2 |
0.623 |
|
| 2018 |
Zhou Z, Pan J, Wang F, Gu JD, Li M. Bathyarchaeota: globally distributed metabolic generalists in anoxic environments. Fems Microbiology Reviews. PMID 29790926 DOI: 10.1093/femsre/fuy023 |
0.544 |
|
| 2018 |
Liu Y, Zhou Z, Pan J, Baker BJ, Gu JD, Li M. Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota. The Isme Journal. PMID 29445130 DOI: 10.1038/S41396-018-0060-X |
0.448 |
|
| 2017 |
Zhou Z, Meng H, Liu Y, Gu JD, Li M. Stratified Bacterial and Archaeal Community in Mangrove and Intertidal Wetland Mudflats Revealed by High Throughput 16S rRNA Gene Sequencing. Frontiers in Microbiology. 8: 2148. PMID 29163432 DOI: 10.3389/fmicb.2017.02148 |
0.334 |
|
| 2014 |
Chen J, Zhou ZC, Gu JD. Occurrence and diversity of nitrite-dependent anaerobic methane oxidation bacteria in the sediments of the South China Sea revealed by amplification of both 16S rRNA and pmoA genes. Applied Microbiology and Biotechnology. 98: 5685-96. PMID 24769903 DOI: 10.1007/s00253-014-5733-4 |
0.316 |
|
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