Jim Pfaendtner, Ph.D.
Affiliations: | Northwestern University, Evanston, IL |
Area:
multiscale modeling, complex kinetics modeling, environmental catalysis, novel biochemical pathways, and polymerization/depolymerization kineticsGoogle:
"Jim Pfaendtner"Mean distance: 10.46 | S | N | B | C | P |
Parents
Sign in to add mentor| Linda J. Broadbelt | grad student | 2007 | Northwestern | |
| (Mechanistic modeling of hydrocarbon autoxidation: Theory and application to the study of lubricant degradation.) | ||||
Children
Sign in to add trainee| Janani Sampath | post-doc | 2018- | University of Washington - Seattle/ NIH |
| Shaohui Zheng | post-doc | 2012-2015 | University of Washington - Seattle/ NIH |
BETA: Related publications
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Publications
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| Mao CM, Sampath J, Pfaendtner J. (2024) Molecular Driving Forces in the Self-Association of Silaffin Peptide R5 from MD Simulations. Chembiochem : a European Journal of Chemical Biology. e202300788 |
| Zhao M, Lachowski KJ, Zhang S, et al. (2022) Hierarchical Self-Assembly Pathways of Peptoid Helices and Sheets. Biomacromolecules |
| Alamdari S, Roeters SJ, Golbek TW, et al. (2020) Orientation and Conformation of Proteins at the Air-Water Interface Determined from Integrative Molecular Dynamics Simulations and Sum Frequency Generation Spectroscopy. Langmuir : the Acs Journal of Surfaces and Colloids. 36: 11855-11865 |
| Zhao M, Sampath J, Alamdari S, et al. (2020) A MARTINI-Compatible Coarse-Grained Model for the Mesoscale Simulation of Peptoids. The Journal of Physical Chemistry. B |
| Xue M, Sampath J, Gebhart R, et al. (2020) Studies of dynamic binding of amino acids to TiO2 nanoparticle surfaces by Solution NMR and Molecular Dynamics Simulations. Langmuir : the Acs Journal of Surfaces and Colloids |
| Buckle EL, Sampath J, Michael N, et al. (2020) Trimethylation of the R5 silica-precipitating peptide increases silica particle size by redirecting orthosilicate binding. Chembiochem : a European Journal of Chemical Biology |
| Smith JK, Pfaendtner J. (2020) Elucidating the Molecular Interactions Between Uremic Toxins and the Sudlow II Binding Site of Human Serum Albumin. The Journal of Physical Chemistry. B |
| Hellner B, Alamdari S, Pyles H, et al. (2020) Sequence-structure-binding relationships reveal adhesion behavior of the Car9 solid-binding peptide: an integrated experimental and simulation study. Journal of the American Chemical Society |
| Sampath J, Alamdari S, Pfaendtner J. (2020) Closing the Gap Between Modeling and Experiments in the Self-assembly of Biomolecules at Interfaces and in Solution Chemistry of Materials |
| Emani PS, Yimer YY, Davidowski SK, et al. (2019) Combining Molecular and Spin Dynamics Simulations with Solid-State NMR: A Case Study of Amphiphilic Lysine-Leucine Repeat Peptide Aggregates. The Journal of Physical Chemistry. B |