Dmitry A. Kondrashov, Ph.D.
Affiliations: | 2005 | University of Arizona, Tucson, AZ |
Area:
Protein Structure, Function and InhibitionGoogle:
"Dmitry Kondrashov"Mean distance: 9.87
Parents
Sign in to add mentor| William R. Montfort | grad student | 2005 | University of Arizona | |
| (Protein control of a ligand: Modeling nitric oxide release in nitrophorin 4.) | ||||
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Publications
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| Kondrashov DA, Kondrashov FA. (2015) Topological features of rugged fitness landscapes in sequence space. Trends in Genetics : Tig. 31: 24-33 |
| Kondrashov DA. (2011) Using normal mode analysis in teaching mathematical modeling to biology students Mathematical Modelling of Natural Phenomena. 6: 278-294 |
| Bitto E, Bingman CA, Bittova L, et al. (2008) Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain. The Journal of Biological Chemistry. 283: 30184-92 |
| Kondrashov DA, Zhang W, Aranda R, et al. (2008) Sampling of the native conformational ensemble of myoglobin via structures in different crystalline environments. Proteins. 70: 353-62 |
| Bitto E, Bingman CA, Kondrashov DA, et al. (2008) Structure and dynamics of gamma-SNAP: insight into flexibility of proteins from the SNAP family. Proteins. 70: 93-104 |
| DiMaio F, Kondrashov DA, Bitto E, et al. (2007) Creating protein models from electron-density maps using particle-filtering methods. Bioinformatics (Oxford, England). 23: 2851-8 |
| Levin EJ, Kondrashov DA, Wesenberg GE, et al. (2007) Ensemble refinement of protein crystal structures: validation and application. Structure (London, England : 1993). 15: 1040-52 |
| Kondrashov DA, Montfort WR. (2007) Nonequilibrium dynamics simulations of nitric oxide release: comparative study of nitrophorin and myoglobin. The Journal of Physical Chemistry. B. 111: 9244-52 |
| Kondrashov DA, Van Wynsberghe AW, Bannen RM, et al. (2007) Protein structural variation in computational models and crystallographic data. Structure (London, England : 1993). 15: 169-77 |
| McCoy JG, Bitto E, Bingman CA, et al. (2007) Structure and dynamics of UDP-glucose pyrophosphorylase from Arabidopsis thaliana with bound UDP-glucose and UTP. Journal of Molecular Biology. 366: 830-41 |