Peter C. Anderson, Ph.D.

Affiliations: 
2007 University of Wisconsin, Madison, Madison, WI 
Area:
studies of non-covalent interactions and the application of the resulting findings to biochemical and biomedical problems
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"Peter Anderson"
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Sandro Mecozzi grad student 2007 UW Madison
 (I. A novel computational methodology for identifying RNA minimum sequence requirements for ligand binding and recognition. II. Fluorine force field parameterization and modeling of organic fluorine.)
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Publications

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Chong AS, Anderson PC. (2019) Molecular dynamics simulations of the hypoxia-inducible factor PAS-B domain confirm that internally bound water molecules function to stabilize the protein core for ligand binding. Biochemistry
Collins AP, Anderson P. (2018) Complete coupled binding-folding pathway of the intrinsically disordered transcription factor protein Brinker revealed by molecular dynamics simulations and Markov state modeling. Biochemistry
Warfield BM, Anderson PC. (2017) Molecular simulations and Markov state modeling reveal the structural diversity and dynamics of a theophylline-binding RNA aptamer in its unbound state. Plos One. 12: e0176229
Anderson PC, De Sapio V, Turner KB, et al. (2012) Identification of binding specificity-determining features in protein families. Journal of Medicinal Chemistry. 55: 1926-39
Key J, Scheuermann TH, Anderson PC, et al. (2009) Principles of ligand binding within a completely buried cavity in HIF2α PAS-B Journal of the American Chemical Society. 131: 17647-17654
Anderson PC, Mecozzi S. (2007) Minimum sequence requirements for the binding of paromomycin to the rRNA decoding site A. Biopolymers. 86: 95-111
Anderson PC, Mecozzi S. (2006) Minimum sequence requirements for selective RNA-ligand binding: a molecular mechanics algorithm using molecular dynamics and free-energy techniques. Journal of Computational Chemistry. 27: 1631-40
Anderson PC, Mecozzi S. (2005) Identification of a 14mer RNA that recognizes and binds flavin mononucleotide with high affinity. Nucleic Acids Research. 33: 6992-9
Anderson PC, Mecozzi S. (2005) Unusually short RNA sequences: design of a 13-mer RNA that selectively binds and recognizes theophylline. Journal of the American Chemical Society. 127: 5290-1
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