Daniel Mende

Affiliations: 
Structural and Computational Biology European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany 
Website:
http://www.embl.de/research/units/scb/bork/members/index.php?s_personId=5768
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"Daniel Mende"
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Cross-listing: Computational Biology Tree

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Publications

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Boeuf D, Eppley JM, Mende DR, et al. (2021) Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage. Microbiome. 9: 172
Ruscheweyh HJ, Milanese A, Paoli L, et al. (2021) mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial Communities. Current Protocols. 1: e218
Orakov A, Fullam A, Coelho LP, et al. (2021) GUNC: detection of chimerism and contamination in prokaryotic genomes. Genome Biology. 22: 178
Becker KW, Harke MJ, Mende DR, et al. (2020) Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic ocean. The Isme Journal
Janes VA, van der Laan JS, Matamoros S, et al. (2020) Thermus thermophilus DNA can be used as internal control for process monitoring of clinical metagenomic next-generation sequencing of urine samples. Journal of Microbiological Methods. 106005
Qin W, Zheng Y, Zhao F, et al. (2020) Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea. The Isme Journal
Luo E, Eppley JM, Romano AE, et al. (2020) Double-stranded DNA virioplankton dynamics and reproductive strategies in the oligotrophic open ocean water column. The Isme Journal
Maistrenko OM, Mende DR, Luetge M, et al. (2020) Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversity. The Isme Journal
Mende DR, Letunic I, Maistrenko OM, et al. (2019) proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes. Nucleic Acids Research
Mende DR, Boeuf D, DeLong EF. (2019) Persistent Core Populations Shape the Microbiome Throughout the Water Column in the North Pacific Subtropical Gyre. Frontiers in Microbiology. 10: 2273
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