Daniel Mende

Structural and Computational Biology European Molecular Biology Laboratory (EMBL), Heidelberg, Baden-Württemberg, Germany 
"Daniel Mende"
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Schmidt TSB, Fullam A, Ferretti P, et al. (2023) SPIRE: a Searchable, Planetary-scale mIcrobiome REsource. Nucleic Acids Research
Ruscheweyh HJ, Milanese A, Paoli L, et al. (2022) Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments. Microbiome. 10: 212
Fullam A, Letunic I, Schmidt TSB, et al. (2022) proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes. Nucleic Acids Research
Hernández-Plaza A, Szklarczyk D, Botas J, et al. (2022) eggNOG 6.0: enabling comparative genomics across 12 535 organisms. Nucleic Acids Research
Meyer F, Fritz A, Deng ZL, et al. (2022) Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods. 19: 429-440
Bongrand C, Koch E, Mende D, et al. (2022) Evidence of Genomic Diversification in a Natural Symbiotic Population Within Its Host. Frontiers in Microbiology. 13: 854355
van der Putten BCL, Huijsmans NAH, Mende DR, et al. (2022) Benchmarking the topological accuracy of bacterial phylogenomic workflows using evolution. Microbial Genomics. 8
Muratore D, Boysen AK, Harke MJ, et al. (2022) Complex marine microbial communities partition metabolism of scarce resources over the diel cycle. Nature Ecology & Evolution
Coelho LP, Alves R, Del Río ÁR, et al. (2021) Towards the biogeography of prokaryotic genes. Nature
Boeuf D, Eppley JM, Mende DR, et al. (2021) Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage. Microbiome. 9: 172
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