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Sheldon R. Dennis, Ph.D.

Affiliations: 
2002 Boston University, Boston, MA, United States 
Area:
Biomedical Engineering, Molecular Biology, General Biophysics, Pharmaceutical Chemistry
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Sandor Vajda grad student 2002 Boston University
 (Computational mapping of proteins for the binding of small ligands.)

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Publications

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Naïm M, Bhat S, Rankin KN, et al. (2007) Solvated interaction energy (SIE) for scoring protein-ligand binding affinities. 1. Exploring the parameter space. Journal of Chemical Information and Modeling. 47: 122-33
Silberstein M, Dennis S, Brown L, et al. (2003) Identification of substrate binding sites in enzymes by computational solvent mapping. Journal of Molecular Biology. 332: 1095-113
Kortvelyesi T, Silberstein M, Dennis S, et al. (2003) Improved mapping of protein binding sites. Journal of Computer-Aided Molecular Design. 17: 173-86
Kortvelyesi T, Dennis S, Silberstein M, et al. (2003) Algorithms for computational solvent mapping of proteins. Proteins. 51: 340-51
Dennis S, Vajda S. (2002) Semiglobal simplex optimization and its application to determining the preferred solvation sites of proteins. Journal of Computational Chemistry. 23: 319-34
Dennis S, Kortvelyesi T, Vajda S. (2002) Computational mapping identifies the binding sites of organic solvents on proteins. Proceedings of the National Academy of Sciences of the United States of America. 99: 4290-5
Gatchell DW, Dennis S, Vajda S. (2000) Discrimination of near-native protein structures from misfolded models by empirical free energy functions. Proteins. 41: 518-34
Dennis S, Camacho CJ, Vajda S. (2000) Continuum electrostatic analysis of preferred solvation sites around proteins in solution. Proteins. 38: 176-88
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