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Lutfu S. Yilmaz, Ph.D.

Affiliations: 
2006 University of Wisconsin, Madison, Madison, WI 
Area:
Environmental Engineering, Microbiology Biology, Biochemistry
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Daniel R. Noguera grad student 2006 UW Madison
 (Development of thermodynamic models for the optimization of fluorescence in situ hybridization.)

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Publications

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Noguera DR, Wright ES, Camejo P, et al. (2014) Mathematical tools to optimize the design of oligonucleotide probes and primers. Applied Microbiology and Biotechnology. 98: 9595-608
Wright ES, Yilmaz LS, Corcoran AM, et al. (2014) Automated design of probes for rRNA-targeted fluorescence in situ hybridization reveals the advantages of using dual probes for accurate identification. Applied and Environmental Microbiology. 80: 5124-33
Wright ES, Yilmaz LS, Ram S, et al. (2014) Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates. Environmental Microbiology. 16: 1354-65
Yilmaz LS, Loy A, Wright ES, et al. (2012) Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics. Plos One. 7: e43862
Okten HE, Yilmaz LS, Noguera DR. (2012) Exploring the in situ accessibility of small subunit ribosomal RNA of members of the domains Bacteria and Eukarya to oligonucleotide probes. Systematic and Applied Microbiology. 35: 485-95
Wright ES, Yilmaz LS, Noguera DR. (2012) DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Applied and Environmental Microbiology. 78: 717-25
Yilmaz LS, Parnerkar S, Noguera DR. (2011) mathFISH, a web tool that uses thermodynamics-based mathematical models for in silico evaluation of oligonucleotide probes for fluorescence in situ hybridization. Applied and Environmental Microbiology. 77: 1118-22
Yilmaz LS, Kontur WS, Sanders AP, et al. (2010) Electron partitioning during light- and nutrient-powered hydrogen production by Rhodobacter sphaeroides Bioenergy Research. 3: 55-66
Yilmaz LS, Starke J, Ramos F, et al. (2010) Designing high-density microarrays for detection of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in water samples Water Quality Technology Conference and Exposition 2010. 2663-2668
Yilmaz LS, Bergsven LI, Noguera DR. (2008) Systematic evaluation of single mismatch stability predictors for fluorescence in situ hybridization. Environmental Microbiology. 10: 2872-85
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