Justin M. Spiriti, Ph.D.
Affiliations: | 2011 | Chemistry | Arizona State University, Tempe, AZ, United States |
Area:
Biochemistry, Physical Chemistry, General BiophysicsGoogle:
"Justin Spiriti"Mean distance: (not calculated yet)
Parents
Sign in to add mentor| Arjan van der Vaart | grad student | 2011 | Arizona State | |
| (Applications of Adaptive Umbrella Sampling in Biomolecular Simulation.) | ||||
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Publications
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| Spiriti J, Zuckerman DM. (2014) Tunable Coarse Graining for Monte Carlo Simulations of Proteins via Smoothed Energy Tables: Direct and Exchange Simulations. Journal of Chemical Theory and Computation. 10: 5161-5177 |
| Spiriti J, van der Vaart A. (2013) DNA binding and bending by Sac7d is stepwise. Chembiochem : a European Journal of Chemical Biology. 14: 1434-7 |
| Spiriti J, Kamberaj H, de Graff AM, et al. (2012) DNA Bending through Large Angles Is Aided by Ionic Screening. Journal of Chemical Theory and Computation. 8: 2145-56 |
| Spiriti J, van der Vaart A. (2012) DNA Bending through Roll Angles Is Independent of Adjacent Base Pairs. The Journal of Physical Chemistry Letters. 3: 3029-33 |
| Spiriti JM, Vaart Avd. (2012) Simulations of DNA Bending using Adaptive Umbrella Sampling on Roll Angles Biophysical Journal. 102 |
| Spiriti J, Kamberaj H, Vaart AVD. (2012) Development and application of enhanced sampling techniques to simulate the long‐time scale dynamics of biomolecular systems International Journal of Quantum Chemistry. 112: 33-43 |
| Spiriti J, Binder JK, Levitus M, et al. (2011) Cy3-DNA stacking interactions strongly depend on the identity of the terminal basepair. Biophysical Journal. 100: 1049-57 |
| Spiriti J, van der Vaart A. (2010) Mechanism of the calcium-induced trans-cis isomerization of a non-prolyl peptide bond in Clostridium histolyticum collagenase. Biochemistry. 49: 5314-20 |
| Spiriti JM, Vaart Avd. (2010) Investigation of Fluorescent DYE-DNA Interactions using Multidimensional Adaptive Umbrella Sampling Simulations Biophysical Journal. 98 |
| Spiriti J, Bogani F, van der Vaart A, et al. (2008) Modulation of protein stability by O-glycosylation in a designed Gc-MAF analog. Biophysical Chemistry. 134: 157-67 |