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David L. Beveridge, PhD

Wesleyan University, Middletown, CT, United States 
Theoretical and computational chemistry
"David L. Beveridge"
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Lakhani B, Thayer KM, Black E, et al. (2019) Spectral analysis of molecular dynamics simulations on PDZ: MD sectors. Journal of Biomolecular Structure & Dynamics. 1-10
Mishra A, Siwach P, Misra P, et al. (2018) Toward a Universal Structural and Energetic Model for Prokaryotic Promoters. Biophysical Journal
Thayer KM, Lakhani B, Beveridge DL. (2017) A Molecular Dynamics-Markov State Model of Protein Ligand Binding and Allostery in CRIB-PDZ: Conformational Selection and Induced Fit. The Journal of Physical Chemistry. B
Lakhani B, Thayer KM, Hingorani MM, et al. (2017) Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein. The Journal of Physical Chemistry. B
Lakhani B, Black E, Beveridge DL. (2015) 56 Molecular dynamics simulation studies of protein sectors: motional correlations. Journal of Biomolecular Structure & Dynamics. 33: 38
Pasi M, Maddocks JH, Beveridge D, et al. (2014) μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA. Nucleic Acids Research. 42: 12272-83
Khandelwal G, Lee RA, Jayaram B, et al. (2014) A statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomes. Biophysical Journal. 106: 2465-73
Dixit SB, Mezei M, Beveridge DL. (2012) Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations. Journal of Biosciences. 37: 399-421
Beveridge DL, Cheatham TE, Mezei M. (2012) The ABCs of molecular dynamics simulations on B-DNA, circa 2012. Journal of Biosciences. 37: 379-97
Wheatley EG, Pieniazek SN, Mukerji I, et al. (2012) Molecular dynamics of a DNA Holliday junction: the inverted repeat sequence d(CCGGTACCGG)â‚„. Biophysical Journal. 102: 552-60
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