Yingkai Zhang, Ph.D.
Affiliations: | Chemistry | New York University, New York, NY, United States |
Area:
Enzyme simulationsWebsite:
http://www.nyu.edu/projects/yzhang/Google:
"Yingkai Zhang"Mean distance: 8.26 | S | N | B | C | P |
Parents
Sign in to add mentor| Weitao Yang | grad student | 1995-2000 | Duke | |
| (Development and application of the combined quantum mechanical/molecular mechanical method and density functional theory.) | ||||
| J. Andrew McCammon | post-doc | 2000-2003 | UCSD | |
Children
Sign in to add trainee| Haotian Li | grad student | NYU | |
| Po Hu | grad student | 2008 | NYU |
| Han Zheng | grad student | 2009 | NYU |
| David Rooklin | grad student | 2012 | NYU |
| Thomas A. Weingarten | grad student | 2012 | NYU |
| Gulseher S. Sirin | grad student | 2013 | NYU |
| Xia Xiao | grad student | 2014 | NYU |
| Nengjie Zhou | grad student | 2014 | NYU |
| Yongle Li | post-doc | 2013-2015 | NYU |
BETA: Related publications
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Publications
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| Torner JM, Yang Y, Rooklin D, et al. (2021) Identification of Secondary Binding Sites on Protein Surfaces for Rational Elaboration of Synthetic Protein Mimics. Acs Chemical Biology |
| Du J, Li W, Liu B, et al. (2020) An in silico mechanistic insight into HDAC8 activation facilitates the discovery of new small-molecule activators. Bioorganic & Medicinal Chemistry. 28: 115607 |
| Liu X, Zhao J, Zhang Y, et al. (2020) Substrate-Enzyme Interactions in Intramembrane Proteolysis: γ-Secretase as the Prototype. Frontiers in Molecular Neuroscience. 13: 65 |
| Sadek J, Wuo MG, Rooklin D, et al. (2020) Modulation of virus-induced NF-κB signaling by NEMO coiled coil mimics. Nature Communications. 11: 1786 |
| Hou X, Sun JP, Ge L, et al. (2020) Inhibition of striatal-enriched protein tyrosine phosphatase by targeting computationally revealed cryptic pockets. European Journal of Medicinal Chemistry. 190: 112131 |
| Katigbak J, Li H, Rooklin DW, et al. (2020) AlphaSpace 2.0: Representing Concave Biomolecular Surfaces using Beta-Clusters. Journal of Chemical Information and Modeling |
| Chen L, Marsiglia WM, Chen H, et al. (2020) Molecular basis for receptor tyrosine kinase A-loop tyrosine transphosphorylation. Nature Chemical Biology |
| Marsiglia WM, Katigbak J, Zheng S, et al. (2019) A Conserved Allosteric Pathway in Tyrosine Kinase Regulation. Structure (London, England : 1993) |
| Ka Man Tse C, Xu J, Xu L, et al. (2019) Intrinsic Cleavage of RNA Polymerase II Adopts a Nucleobase-independent Mechanism Assisted by Transcript Phosphate. Nature Energy. 2: 228-235 |
| Lu J, Wang C, Zhang Y. (2019) Predicting Molecular Energy using Force-Field Optimized Geometries and Atomic Vector Representations Learned from Improved Deep Tensor Neural Network. Journal of Chemical Theory and Computation |