Giovanni Bussi
Affiliations: | Scuola Internazionale Superiore di Studi Avanzati, Trieste, TS, Italy |
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Parents
Sign in to add mentor| Elisa Molinari | grad student | 2002-2004 | Università di Modena e Reggio Emilia |
| Michele Parrinello | post-doc | 2005-2008 |
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Publications
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| Calonaci N, Bernetti M, Jones A, et al. (2023) Molecular Dynamics Simulations with Grand-Canonical Reweighting Suggest Cooperativity Effects in RNA Structure Probing Experiments. Journal of Chemical Theory and Computation. 19: 3672-3685 |
| Fröhlking T, Bernetti M, Bussi G. (2023) Simultaneous refinement of molecular dynamics ensembles and forward models using experimental data. The Journal of Chemical Physics. 158 |
| Zhang Z, Šponer J, Bussi G, et al. (2023) Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. Journal of Chemical Information and Modeling. 63: 2794-2809 |
| Bernetti M, Bussi G. (2022) Integrating experimental data with molecular simulations to investigate RNA structural dynamics. Current Opinion in Structural Biology. 78: 102503 |
| Rolband L, Beasock D, Wang Y, et al. (2022) Biomotors, viral assembly, and RNA nanobiotechnology: Current achievements and future directions. Computational and Structural Biotechnology Journal. 20: 6120-6137 |
| Grothaus IL, Bussi G, Colombi Ciacchi L. (2022) Exploration, Representation, and Rationalization of the Conformational Phase Space of N-Glycans. Journal of Chemical Information and Modeling. 62: 4992-5008 |
| Piomponi V, Fröhlking T, Bernetti M, et al. (2022) Molecular Simulations Matching Denaturation Experiments for N-Methyladenosine. Acs Central Science. 8: 1218-1228 |
| Fröhlking T, Mlýnský V, Janeček M, et al. (2022) Automatic Learning of Hydrogen-Bond Fixes in the AMBER RNA Force Field. Journal of Chemical Theory and Computation |
| Mlýnský V, Janeček M, Kührová P, et al. (2022) Toward Convergence in Folding Simulations of RNA Tetraloops: Comparison of Enhanced Sampling Techniques and Effects of Force Field Modifications. Journal of Chemical Theory and Computation. 18: 2642-2656 |
| Bernetti M, Hall KB, Bussi G. (2021) Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles. Nucleic Acids Research |