Nicholas A. Bokulich, Ph.D.
Affiliations: | 2014 | Food Science | University of California, Davis, Davis, CA |
Area:
Food Science and Technology Agriculture, Microbiology BiologyGoogle:
"Nicholas Bokulich"Parents
Sign in to add mentor| David A Mills | grad student | 2014 | UC Davis | |
| (Mapping Microbial Dynamics in Food Systems.) | ||||
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Publications
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| Ziemski M, Adamov A, Kim L, et al. (2022) Reproducible acquisition, management, and meta-analysis of nucleotide sequence (meta)data using q2-fondue. Bioinformatics (Oxford, England) |
| Ziemski M, Wisanwanichthan T, Bokulich NA, et al. (2021) Beating Naive Bayes at Taxonomic Classification of 16S rRNA Gene Sequences. Frontiers in Microbiology. 12: 644487 |
| Dillon MR, Bolyen E, Adamov A, et al. (2021) Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops. Plos Computational Biology. 17: e1009056 |
| Chichlowski M, Bokulich N, Harris CL, et al. (2021) Effect of Bovine Milk Fat Globule Membrane and Lactoferrin in Infant Formula on Gut Microbiome and Metabolome at 4 Months of Age. Current Developments in Nutrition. 5: nzab027 |
| Griggs RG, Steenwerth KL, Mills DA, et al. (2021) Sources and Assembly of Microbial Communities in Vineyards as a Functional Component of Winegrowing. Frontiers in Microbiology. 12: 673810 |
| Morton JT, McDonald D, Aksenov AA, et al. (2021) Reply to: Examining microbe-metabolite correlations by linear methods. Nature Methods |
| Bolyen E, Dillon MR, Bokulich NA, et al. (2020) Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity. F1000research. 9: 657 |
| Bokulich NA, Ziemski M, Robeson MS, et al. (2020) Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods. Computational and Structural Biotechnology Journal. 18: 4048-4062 |
| O'Rourke DR, Bokulich NA, Jusino MA, et al. (2020) A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses. Ecology and Evolution. 10: 9721-9739 |
| Kaplan I, Bokulich NA, Caporaso JG, et al. (2020) Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome? Evolutionary Applications. 13: 1984-1999 |