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Han-Yu Chuang, Ph.D. - Publications

Affiliations: 
Bioinformatics University of California, San Diego, La Jolla, CA 
Area:
computational biology
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Du T, Snedecor J, LoCoco JS, Chen X, Ball L, Castaneda A, Chou D, Clark K, Crain B, Daulo A, Do M, Dumm S, Han Y, Havern M, Hsieh C, ... ... Chuang H, et al. Abstract 565: Analytical performance of TruSight® Tumor 170 in the detection of gene fusions and splice variants using RNA from formalin-fixed, paraffin-embedded (FFPE) solid tumor samples Cancer Research. 77: 565-565. DOI: 10.1158/1538-7445.Am2017-565  0.346
2016 Hsieh C, Zlatkov C, Luo B, Zhao C, Stephens K, Chuang H, Kelly L, Chang K, Liang R, Cao J, Lang S, Adams A, Ajili N, Ball L, Caves G, et al. Abstract 3624: Development of a comprehensive and highly sensitive next-generation sequencing assay for detection of copy number variations Cancer Research. 76: 3624-3624. DOI: 10.1158/1538-7445.Am2016-3624  0.356
2016 Parks JT, Byron L, Crain B, June S, Chen Z, Du T, Sica GL, Owonikoko TK, Neill SG, Newman S, Saxe DF, LoCoco JS, Chuang H, Lin C, Stephens KM, et al. Abstract 3607: An evaluation of NGS to identify gene fusions using RNA from FFPE solid tumor samples Cancer Research. 76: 3607-3607. DOI: 10.1158/1538-7445.Am2016-3607  0.373
2014 Tembe WD, Pond SJ, Legendre C, Chuang HY, Liang WS, Kim NE, Montel V, Wong S, McDaniel TK, Craig DW, Carpten JD. Open-access synthetic spike-in mRNA-seq data for cancer gene fusions. Bmc Genomics. 15: 824. PMID 25266161 DOI: 10.1186/1471-2164-15-824  0.34
2014 Liang W, Pond SJ, Tembe WD, Chuang H, Legendre C, Kim N, Montel V, Wong S, McDaniel TK, Craig D, Carpten J. Abstract 3571: mRNA spike-in control materials for cancer fusion gene detection assays Cancer Research. 74: 3571-3571. DOI: 10.1158/1538-7445.Am2014-3571  0.319
2013 Lee K, Byun K, Hong W, Chuang HY, Pack CG, Bayarsaikhan E, Paek SH, Kim H, Shin HY, Ideker T, Lee B. Proteome-wide discovery of mislocated proteins in cancer. Genome Research. 23: 1283-94. PMID 23674306 DOI: 10.1101/Gr.155499.113  0.479
2012 Chuang HY, Rassenti L, Salcedo M, Licon K, Kohlmann A, Haferlach T, Foà R, Ideker T, Kipps TJ. Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression. Blood. 120: 2639-49. PMID 22837534 DOI: 10.1182/Blood-2012-03-416461  0.484
2012 Zhang S, Chen L, Cui B, Chuang HY, Yu J, Wang-Rodriguez J, Tang L, Chen G, Basak GW, Kipps TJ. ROR1 is expressed in human breast cancer and associated with enhanced tumor-cell growth. Plos One. 7: e31127. PMID 22403610 DOI: 10.1371/Journal.Pone.0031127  0.338
2012 Zhang S, Chen L, Cui B, Chuang H, Yu J, Wang-Rodriguez J, Tang L, Chen G, Basak GW, Kipps TJ. Abstract 3868: ROR1 is expressed in human breast cancer and associated with enhanced tumor-cell growth Cancer Research. 72: 3868-3868. DOI: 10.1158/1538-7445.Am2012-3868  0.344
2010 Zhang W, Kater AP, Widhopf GF, Chuang HY, Enzler T, James DF, Poustovoitov M, Tseng PH, Janz S, Hoh C, Herschman H, Karin M, Kipps TJ. B-cell activating factor and v-Myc myelocytomatosis viral oncogene homolog (c-Myc) influence progression of chronic lymphocytic leukemia. Proceedings of the National Academy of Sciences of the United States of America. 107: 18956-60. PMID 20956327 DOI: 10.1073/Pnas.1013420107  0.303
2010 Chuang HY, Hofree M, Ideker T. A decade of systems biology. Annual Review of Cell and Developmental Biology. 26: 721-44. PMID 20604711 DOI: 10.1146/Annurev-Cellbio-100109-104122  0.476
2009 Zhang W, Kater AP, Chuang H, Enzler T, Widhopf GF, James D, Herschman H, Karin M, Kipps TJ. B Cell Activating Factor and c-Myc Regulate the Progression of Chronic Lymphocytic Leukemia. Blood. 114: 359-359. DOI: 10.1182/Blood.V114.22.359.359  0.328
2008 Lee E, Chuang HY, Kim JW, Ideker T, Lee D. Inferring pathway activity toward precise disease classification. Plos Computational Biology. 4: e1000217. PMID 18989396 DOI: 10.1371/Journal.Pcbi.1000217  0.545
2008 Lee K, Chuang HY, Beyer A, Sung MK, Huh WK, Lee B, Ideker T. Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species. Nucleic Acids Research. 36: e136. PMID 18836191 DOI: 10.1093/Nar/Gkn619  0.548
2008 Chuang H, Rassenti L, Ideker T, Kipps TJ. Interactome-Based Molecular Prognosis of Chronic Lymphocytic Leukemia Blood. 112: 545-545. DOI: 10.1182/Blood.V112.11.545.545  0.569
2007 Chuang HY, Lee E, Liu YT, Lee D, Ideker T. Network-based classification of breast cancer metastasis. Molecular Systems Biology. 3: 140. PMID 17940530 DOI: 10.1038/Msb4100180  0.547
2005 Chuang H, Liu Y, Rassenti LZ, Huynh L, Carson D, Kipps TJ. Expression of Lymphocyte Activation Gene 3 (LAG-3/CD223) by Chronic Lymphocytic Leukemia B Cells. Blood. 106: 2952-2952. DOI: 10.1182/Blood.V106.11.2952.2952  0.359
2005 Liu Y, Rassenti LZ, Shen Z, Chuang H, Briggs SP, Kipps TJ, Carson D. Differential Expression Profile of the Proteome and Transcriptome in Aggressive and Indolent Chronic Lymphocytic Leukemia. Blood. 106: 2101-2101. DOI: 10.1182/Blood.V106.11.2101.2101  0.422
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