| Year |
Citation |
Score |
| 2022 |
Grossbach J, Gillet L, Clément-Ziza M, Schmalohr CL, Schubert OT, Schütter M, Mawer JSP, Barnes CA, Bludau I, Weith M, Tessarz P, Graef M, Aebersold R, Beyer A. The impact of genomic variation on protein phosphorylation states and regulatory networks. Molecular Systems Biology. 18: e10712. PMID 35574625 DOI: 10.15252/msb.202110712 |
0.306 |
|
| 2019 |
Shao W, Guo T, Toussaint NC, Xue P, Wagner U, Li L, Charmpi K, Zhu Y, Wu J, Buljan M, Sun R, Rutishauser D, Hermanns T, Fankhauser CD, Poyet C, ... ... Beyer A, et al. Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins. Nature Communications. 10: 2524. PMID 31175306 DOI: 10.1038/S41467-019-10513-5 |
0.339 |
|
| 2018 |
Späth MR, Bartram MP, Palacio-Escat N, Hoyer KJR, Debes C, Demir F, Schroeter CB, Mandel AM, Grundmann F, Ciarimboli G, Beyer A, Kizhakkedathu JN, Brodesser S, Göbel H, Becker JU, et al. The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury. Kidney International. PMID 30522767 DOI: 10.1016/J.Kint.2018.08.037 |
0.327 |
|
| 2018 |
Höhne M, Frese CK, Grahammer F, Dafinger C, Ciarimboli G, Butt L, Binz J, Hackl MJ, Rahmatollahi M, Kann M, Schneider S, Altintas MM, Schermer B, Reinheckel T, Göbel H, ... ... Beyer A, et al. Single nephron proteomes connect morphology and function in proteinuric kidney disease. Kidney International. PMID 29530281 DOI: 10.1016/J.Kint.2017.12.012 |
0.339 |
|
| 2017 |
Mackmull MT, Klaus B, Heinze I, Chokkalingam M, Beyer A, Russell RB, Ori A, Beck M. Landscape of nuclear transport receptor cargo specificity. Molecular Systems Biology. 13: 962. PMID 29254951 DOI: 10.15252/Msb.20177608 |
0.315 |
|
| 2017 |
Liu Y, Borel C, Li L, Müller T, Williams EG, Germain PL, Buljan M, Sajic T, Boersema PJ, Shao W, Faini M, Testa G, Beyer A, Antonarakis SE, Aebersold R. Systematic proteome and proteostasis profiling in human Trisomy 21 fibroblast cells. Nature Communications. 8: 1212. PMID 29089484 DOI: 10.1038/S41467-017-01422-6 |
0.37 |
|
| 2017 |
Seifert M, Beyer A. regNet: An R package for network-based propagation of gene expression alterations. Bioinformatics (Oxford, England). PMID 28968690 DOI: 10.1093/Bioinformatics/Btx544 |
0.338 |
|
| 2017 |
Tain LS, Sehlke R, Jain C, Chokkalingam M, Nagaraj N, Essers P, Rassner M, Grönke S, Froelich J, Dieterich C, Mann M, Alic N, Beyer A, Partridge L. A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. Molecular Systems Biology. 13: 939. PMID 28916541 DOI: 10.15252/Msb.20177663 |
0.313 |
|
| 2017 |
Zhong Q, Guo T, Toussaint N, Wagner U, Charmpi K, Calzone L, Beyer A, Aebersold R, Wild PJ. Abstract 5565: Multi-omic profiling of prostate cancer evolution in 39 patients Cancer Research. 77: 5565-5565. DOI: 10.1158/1538-7445.Am2017-5565 |
0.335 |
|
| 2016 |
Seifert M, Friedrich B, Beyer A. Importance of rare gene copy number alterations for personalized tumor characterization and survival analysis. Genome Biology. 17: 204. PMID 27716417 DOI: 10.1186/S13059-016-1058-1 |
0.318 |
|
| 2016 |
Liu Y, Beyer A, Aebersold R. On the Dependency of Cellular Protein Levels on mRNA Abundance. Cell. 165: 535-50. PMID 27104977 DOI: 10.1016/J.Cell.2016.03.014 |
0.393 |
|
| 2015 |
Valenzano DR, Benayoun BA, Singh PP, Zhang E, Etter PD, Hu CK, Clément-Ziza M, Willemsen D, Cui R, Harel I, Machado BE, Yee MC, Sharp SC, Bustamante CD, Beyer A, et al. The African Turquoise Killifish Genome Provides Insights into Evolution and Genetic Architecture of Lifespan. Cell. 163: 1539-54. PMID 26638078 DOI: 10.1016/J.Cell.2015.11.008 |
0.317 |
|
| 2015 |
Stephan J, Stegle O, Beyer A. A random forest approach to capture genetic effects in the presence of population structure. Nature Communications. 6: 7432. PMID 26109276 DOI: 10.1038/Ncomms8432 |
0.309 |
|
| 2014 |
Clément-Ziza M, Marsellach FX, Codlin S, Papadakis MA, Reinhardt S, RodrÃguez-López M, Martin S, Marguerat S, Schmidt A, Lee E, Workman CT, Bähler J, Beyer A. Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast. Molecular Systems Biology. 10: 764. PMID 25432776 DOI: 10.15252/Msb.20145123 |
0.547 |
|
| 2014 |
Günal-Sad?k G, Paszkowski-Rogacz M, Singaravelu K, Beyer A, Buchholz F, Jessberger R. Stage-specific binding profiles of cohesin in resting and activated B lymphocytes suggest a role for cohesin in immunoglobulin class switching and maturation. Plos One. 9: e111748. PMID 25375358 DOI: 10.1371/Journal.Pone.0111748 |
0.307 |
|
| 2014 |
Simeone A, Marsico G, Collinet C, Galvez T, Kalaidzidis Y, Zerial M, Beyer A. Revealing molecular mechanisms by integrating high-dimensional functional screens with protein interaction data. Plos Computational Biology. 10: e1003801. PMID 25188415 DOI: 10.1371/Journal.Pcbi.1003801 |
0.418 |
|
| 2014 |
Kuhn M, Hyman AA, Beyer A. Coiled-coil proteins facilitated the functional expansion of the centrosome. Plos Computational Biology. 10: e1003657. PMID 24901223 DOI: 10.1371/Journal.Pcbi.1003657 |
0.572 |
|
| 2013 |
Lehtinen S, Marsellach FX, Codlin S, Schmidt A, Clément-Ziza M, Beyer A, Bähler J, Orengo C, Pancaldi V. Stress induces remodelling of yeast interaction and co-expression networks. Molecular Biosystems. 9: 1697-707. PMID 23471351 DOI: 10.1039/C3Mb25548D |
0.356 |
|
| 2013 |
Gunaratne J, Schmidt A, Quandt A, Neo SP, Saraç OS, Gracia T, Loguercio S, Ahrné E, Xia RL, Tan KH, Lössner C, Bähler J, Beyer A, Blackstock W, Aebersold R. Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas. Molecular & Cellular Proteomics : McP. 12: 1741-51. PMID 23462206 DOI: 10.1074/Mcp.M112.023754 |
0.398 |
|
| 2013 |
Picotti P, Clément-Ziza M, Lam H, Campbell DS, Schmidt A, Deutsch EW, Röst H, Sun Z, Rinner O, Reiter L, Shen Q, Michaelson JJ, Frei A, Alberti S, Kusebauch U, ... ... Beyer A, et al. A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis. Nature. 494: 266-70. PMID 23334424 DOI: 10.1038/Nature11835 |
0.353 |
|
| 2012 |
Ackermann M, Clément-Ziza M, Michaelson JJ, Beyer A. Teamwork: improved eQTL mapping using combinations of machine learning methods. Plos One. 7: e40916. PMID 22911718 DOI: 10.1371/Journal.Pone.0040916 |
0.341 |
|
| 2012 |
Saraç OS, Pancaldi V, Bähler J, Beyer A. Topology of functional networks predicts physical binding of proteins. Bioinformatics (Oxford, England). 28: 2137-45. PMID 22718785 DOI: 10.1093/Bioinformatics/Bts351 |
0.332 |
|
| 2012 |
Pancaldi V, Saraç OS, Rallis C, McLean JR, P?evorovský M, Gould K, Beyer A, Bähler J. Predicting the fission yeast protein interaction network. G3 (Bethesda, Md.). 2: 453-67. PMID 22540037 DOI: 10.1534/G3.111.001560 |
0.434 |
|
| 2012 |
Ackermann M, Beyer A. Systematic detection of epistatic interactions based on allele pair frequencies. Plos Genetics. 8: e1002463. PMID 22346757 DOI: 10.1371/Journal.Pgen.1002463 |
0.336 |
|
| 2011 |
Michaelson JJ, Trump S, Rudzok S, Gräbsch C, Madureira DJ, Dautel F, Mai J, Attinger S, Schirmer K, von Bergen M, Lehmann I, Beyer A. Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure. Bmc Genomics. 12: 502. PMID 21995607 DOI: 10.1186/1471-2164-12-502 |
0.307 |
|
| 2011 |
Elefsinioti A, Saraç ÖS, Hegele A, Plake C, Hubner NC, Poser I, Sarov M, Hyman A, Mann M, Schroeder M, Stelzl U, Beyer A. Large-scale de novo prediction of physical protein-protein association. Molecular & Cellular Proteomics : McP. 10: M111.010629. PMID 21836163 DOI: 10.1074/Mcp.M111.010629 |
0.433 |
|
| 2011 |
Dautel F, Kalkhof S, Trump S, Michaelson J, Beyer A, Lehmann I, von Bergen M. DIGE-based protein expression analysis of B[a]P-exposed hepatoma cells reveals a complex stress response including alterations in oxidative stress, cell cycle control, and cytoskeleton motility at toxic and subacute concentrations. Journal of Proteome Research. 10: 379-93. PMID 21171653 DOI: 10.1021/Pr100723D |
0.356 |
|
| 2010 |
Loguercio S, Overall RW, Michaelson JJ, Wiltshire T, Pletcher MT, Miller BH, Walker JR, Kempermann G, Su AI, Beyer A. Integrative analysis of low- and high-resolution eQTL. Plos One. 5: e13920. PMID 21085707 DOI: 10.1371/Journal.Pone.0013920 |
0.336 |
|
| 2010 |
Michaelson JJ, Alberts R, Schughart K, Beyer A. Data-driven assessment of eQTL mapping methods. Bmc Genomics. 11: 502. PMID 20849587 DOI: 10.1186/1471-2164-11-502 |
0.315 |
|
| 2010 |
Ankö ML, Morales L, Henry I, Beyer A, Neugebauer KM. Global analysis reveals SRp20- and SRp75-specific mRNPs in cycling and neural cells. Nature Structural & Molecular Biology. 17: 962-70. PMID 20639886 DOI: 10.1038/Nsmb.1862 |
0.41 |
|
| 2010 |
Aho T, Almusa H, Matilainen J, Larjo A, Ruusuvuori P, Aho KL, Wilhelm T, Lähdesmäki H, Beyer A, Harju M, Chowdhury S, Leinonen K, Roos C, Yli-Harja O. Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network. Plos One. 5: e10662. PMID 20498836 DOI: 10.1371/Journal.Pone.0010662 |
0.579 |
|
| 2010 |
Kuhn M, Szklarczyk D, Franceschini A, Campillos M, von Mering C, Jensen LJ, Beyer A, Bork P. STITCH 2: an interaction network database for small molecules and proteins. Nucleic Acids Research. 38: D552-6. PMID 19897548 DOI: 10.1093/Nar/Gkp937 |
0.626 |
|
| 2009 |
Elefsinioti A, Ackermann M, Beyer A. Accounting for redundancy when integrating gene interaction databases. Plos One. 4: e7492. PMID 19847299 DOI: 10.1371/Journal.Pone.0007492 |
0.408 |
|
| 2009 |
Ucar D, Beyer A, Parthasarathy S, Workman CT. Predicting functionality of protein-DNA interactions by integrating diverse evidence. Bioinformatics (Oxford, England). 25: i137-44. PMID 19477979 DOI: 10.1093/Bioinformatics/Btp213 |
0.585 |
|
| 2009 |
Michaelson JJ, Loguercio S, Beyer A. Detection and interpretation of expression quantitative trait loci (eQTL). Methods (San Diego, Calif.). 48: 265-76. PMID 19303049 DOI: 10.1016/J.Ymeth.2009.03.004 |
0.394 |
|
| 2008 |
Lee K, Chuang HY, Beyer A, Sung MK, Huh WK, Lee B, Ideker T. Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species. Nucleic Acids Research. 36: e136. PMID 18836191 DOI: 10.1093/Nar/Gkn619 |
0.648 |
|
| 2008 |
Suthram S, Beyer A, Karp RM, Eldar Y, Ideker T. eQED: an efficient method for interpreting eQTL associations using protein networks. Molecular Systems Biology. 4: 162. PMID 18319721 DOI: 10.1038/Msb.2008.4 |
0.758 |
|
| 2007 |
Beyer A, Bandyopadhyay S, Ideker T. Integrating physical and genetic maps: from genomes to interaction networks. Nature Reviews. Genetics. 8: 699-710. PMID 17703239 DOI: 10.1038/Nrg2144 |
0.638 |
|
| 2007 |
Pohlers D, Beyer A, Koczan D, Wilhelm T, Thiesen HJ, Kinne RW. Constitutive upregulation of the transforming growth factor-beta pathway in rheumatoid arthritis synovial fibroblasts. Arthritis Research & Therapy. 9: R59. PMID 17594488 DOI: 10.1186/Ar2217 |
0.484 |
|
| 2007 |
Hollunder J, Beyer A, Wilhelm T. Protein subcomplexes--molecular machines with highly specialized functions. Ieee Transactions On Nanobioscience. 6: 86-93. PMID 17393854 DOI: 10.1109/Tnb.2007.891884 |
0.583 |
|
| 2007 |
Brockmann R, Beyer A, Heinisch JJ, Wilhelm T. Posttranscriptional expression regulation: what determines translation rates? Plos Computational Biology. 3: e57. PMID 17381238 DOI: 10.1371/Journal.Pcbi.0030057 |
0.576 |
|
| 2007 |
Hollunder J, Friedel M, Beyer A, Workman CT, Wilhelm T. DASS: efficient discovery and p-value calculation of substructures in unordered data. Bioinformatics (Oxford, England). 23: 77-83. PMID 17032678 DOI: 10.1093/Bioinformatics/Btl511 |
0.67 |
|
| 2007 |
Beyer A, Suthram S, Ideker T. Uncovering regulatory pathways with expression quantitative trait loci Gensips'07 - 5th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2007.4365837 |
0.713 |
|
| 2006 |
Nikolajewa S, Friedel M, Beyer A, Wilhelm T. The new classification scheme of the genetic code, its early evolution, and tRNA usage. Journal of Bioinformatics and Computational Biology. 4: 609-20. PMID 16819806 DOI: 10.1142/S0219720006001825 |
0.495 |
|
| 2006 |
Beyer A, Workman C, Hollunder J, Radke D, Möller U, Wilhelm T, Ideker T. Integrated assessment and prediction of transcription factor binding. Plos Computational Biology. 2: e70. PMID 16789814 DOI: 10.1371/Journal.Pcbi.0020070 |
0.707 |
|
| 2006 |
Wilhelm T, Hollunder J, Kim JK, Beyer A. General classification of networks Proceedings of Aisb'06: Adaptation in Artificial and Biological Systems. 3: 189-194. |
0.435 |
|
| 2005 |
Nikolajewa S, Beyer A, Friedel M, Hollunder J, Wilhelm T. Common patterns in type II restriction enzyme binding sites. Nucleic Acids Research. 33: 2726-33. PMID 15888729 DOI: 10.1093/Nar/Gki575 |
0.522 |
|
| 2005 |
Hollunder J, Beyer A, Wilhelm T. Identification and characterization of protein subcomplexes in yeast. Proteomics. 5: 2082-9. PMID 15832363 DOI: 10.1002/Pmic.200401121 |
0.577 |
|
| 2005 |
Beyer A, Wilhelm T. Dynamic simulation of protein complex formation on a genomic scale. Bioinformatics (Oxford, England). 21: 1610-6. PMID 15598828 DOI: 10.1093/Bioinformatics/Bti223 |
0.558 |
|
| 2004 |
Beyer A, Hollunder J, Nasheuer HP, Wilhelm T. Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale. Molecular & Cellular Proteomics : McP. 3: 1083-92. PMID 15326222 DOI: 10.1074/Mcp.M400099-Mcp200 |
0.589 |
|
| 2003 |
Beyer A, Scheuring S, Müller S, Mincheva A, Lichter P, Köhrer K. Comparative sequence and expression analyses of four mammalian VPS4 genes. Gene. 305: 47-59. PMID 12594041 DOI: 10.1016/S0378-1119(02)01205-2 |
0.369 |
|
| 2001 |
Scheuring S, Röhricht RA, Schöning-Burkhardt B, Beyer A, Müller S, Abts HF, Köhrer K. Mammalian cells express two VPS4 proteins both of which are involved in intracellular protein trafficking. Journal of Molecular Biology. 312: 469-80. PMID 11563910 DOI: 10.1006/Jmbi.2001.4917 |
0.384 |
|
| 2001 |
Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, et al. Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. Genome Research. 11: 422-35. PMID 11230166 DOI: 10.1101/Gr.Gr1547R |
0.353 |
|
| 1999 |
Scheuring S, Bodor O, Röhricht RA, Müller S, Beyer A, Köhrer K. Cloning, characterisation, and functional expression of the Mus musculus SKD1 gene in yeast demonstrates that the mouse SKD1 and the yeast VPS4 genes are orthologues and involved in intracellular protein trafficking. Gene. 234: 149-59. PMID 10393249 DOI: 10.1016/S0378-1119(99)00163-8 |
0.396 |
|
| 1997 |
Portsteffen H, Beyer A, Becker E, Epplen C, Pawlak A, Kunau WH, Dodt G. Human PEX1 is mutated in complementation group 1 of the peroxisome biogenesis disorders. Nature Genetics. 17: 449-52. PMID 9398848 DOI: 10.1038/Ng1297-449 |
0.304 |
|
| 1995 |
Fosså A, Beyer A, Pfitzner E, Wenzel B, Kunau WH. Molecular cloning, sequencing and sequence analysis of the fox-2 gene of Neurospora crassa encoding the multifunctional beta-oxidation protein. Molecular & General Genetics : Mgg. 247: 95-104. PMID 7715608 DOI: 10.1007/Bf00425825 |
0.316 |
|
| 1993 |
Kunau WH, Beyer A, Franken T, Götte K, Marzioch M, Saidowsky J, Skaletz-Rorowski A, Wiebel FF. Two complementary approaches to study peroxisome biogenesis in Saccharomyces cerevisiae: Forward and reversed genetics Biochimie. 75: 209-224. PMID 8507683 DOI: 10.1016/0300-9084(93)90079-8 |
0.359 |
|
| 1991 |
Erdmann R, Wiebel FF, Flessau A, Rytka J, Beyer A, Fröhlich KU, Kunau WH. PAS1, a yeast gene required for peroxisome biogenesis, encodes a member of a novel family of putative ATPases Cell. 64: 499-510. PMID 1825027 DOI: 10.1016/0092-8674(91)90234-P |
0.366 |
|
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