Jim Birchler - Publications

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55/279 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Johnson AF, Hou J, Yang H, Shi X, Chen C, Islam MS, Ji T, Cheng J, Birchler JA. Magnitude of modulation of gene expression in aneuploid maize depends on the extent of genomic imbalance. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 32178980 DOI: 10.1016/J.Jgg.2020.02.002  0.378
2020 Shi X, Chen C, Yang H, Hou J, Ji T, Cheng J, Veitia RA, Birchler JA. The Gene Balance Hypothesis: Epigenetics and Dosage Effects in Plants. Methods in Molecular Biology (Clifton, N.J.). 2093: 161-171. PMID 32088896 DOI: 10.1007/978-1-0716-0179-2_12  0.412
2018 Hou J, Shi X, Chen C, Islam MS, Johnson AF, Kanno T, Huettel B, Yen MR, Hsu FM, Ji T, Chen PY, Matzke M, Matzke AJM, Cheng J, Birchler JA. Global impacts of chromosomal imbalance on gene expression in and other taxa. Proceedings of the National Academy of Sciences of the United States of America. PMID 30429332 DOI: 10.1073/Pnas.1807796115  0.4
2017 Zhao H, Zeng Z, Koo DH, Gill BS, Birchler JA, Jiang J. Recurrent establishment of de novo centromeres in the pericentromeric region of maize chromosome 3. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 28831743 DOI: 10.1007/S10577-017-9564-X  0.303
2016 Su H, Liu Y, Liu YX, Lv Z, Li H, Xie S, Gao Z, Pang J, Wang XJ, Lai J, Birchler JA, Han F. Dynamic chromatin changes associated with de novo centromere formation in maize euchromatin. The Plant Journal : For Cell and Molecular Biology. PMID 27531446 DOI: 10.1111/Tpj.13305  0.387
2016 Feng C, Yuan J, Wang R, Liu Y, Birchler JA, Han F. Efficient Targeted Genome Modification in Maize Using CRISPR/Cas9 System. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 43: 37-43. PMID 26842992 DOI: 10.1016/J.Jgg.2015.10.002  0.301
2014 Birchler JA. Facts and artifacts in studies of gene expression in aneuploids and sex chromosomes. Chromosoma. 123: 459-69. PMID 25069760 DOI: 10.1007/S00412-014-0478-5  0.326
2014 Birchler JA, Veitia RA. The Gene Balance Hypothesis: dosage effects in plants. Methods in Molecular Biology (Clifton, N.J.). 1112: 25-32. PMID 24478005 DOI: 10.1007/978-1-62703-773-0_2  0.384
2013 Sun L, Johnson AF, Li J, Lambdin AS, Cheng J, Birchler JA. Differential effect of aneuploidy on the X chromosome and genes with sex-biased expression in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 110: 16514-9. PMID 24062456 DOI: 10.1073/Pnas.1316041110  0.314
2013 Veitia RA, Bottani S, Birchler JA. Gene dosage effects: nonlinearities, genetic interactions, and dosage compensation. Trends in Genetics : Tig. 29: 385-93. PMID 23684842 DOI: 10.1016/J.Tig.2013.04.004  0.359
2013 Sun L, Johnson AF, Donohue RC, Li J, Cheng J, Birchler JA. Dosage compensation and inverse effects in triple X metafemales of Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 110: 7383-8. PMID 23589863 DOI: 10.1073/Pnas.1305638110  0.31
2013 Birchler JA. Aneuploidy in plants and flies: the origin of studies of genomic imbalance. Seminars in Cell & Developmental Biology. 24: 315-9. PMID 23422884 DOI: 10.1016/J.Semcdb.2013.02.004  0.367
2012 Birchler JA. Insights from paleogenomic and population studies into the consequences of dosage sensitive gene expression in plants. Current Opinion in Plant Biology. 15: 544-8. PMID 22939251 DOI: 10.1016/J.Pbi.2012.08.005  0.323
2012 Birchler JA, Veitia RA. Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines. Proceedings of the National Academy of Sciences of the United States of America. 109: 14746-53. PMID 22908297 DOI: 10.1073/Pnas.1207726109  0.321
2012 Xie W, Birchler JA. Identification of Inverse Regulator-a (Inr-a) as Synonymous with Pre-mRNA Cleavage Complex II Protein (Pcf11) in Drosophila. G3 (Bethesda, Md.). 2: 701-6. PMID 22690379 DOI: 10.1534/G3.112.002071  0.485
2010 Yu C, Danilova T, Zhang J, Birchler J, Peterson T. Constructing defined chromosome segmental duplications in maize. Cytogenetic and Genome Research. 129: 72-81. PMID 20551616 DOI: 10.1159/000314554  0.31
2010 Birchler JA. Reflections on studies of gene expression in aneuploids. The Biochemical Journal. 426: 119-23. PMID 20141513 DOI: 10.1042/Bj20091617  0.368
2010 Birchler JA, Veitia RA. The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution. The New Phytologist. 186: 54-62. PMID 19925558 DOI: 10.1111/J.1469-8137.2009.03087.X  0.345
2010 Riddle NC, Jiang H, An L, Doerge RW, Birchler JA. Gene expression analysis at the intersection of ploidy and hybridity in maize. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 120: 341-53. PMID 19657617 DOI: 10.1007/S00122-009-1113-3  0.324
2010 Guo M, Birchler JA. Trans-acting dosage effects on the expression of model gene systems in maize aneuploids. Science (New York, N.Y.). 266: 1999-2002. PMID 17836517 DOI: 10.1126/Science.266.5193.1999  0.411
2009 Kavi HH, Birchler JA. Drosophila KDM2 is a H3K4me3 demethylase regulating nucleolar organization. Bmc Research Notes. 2: 217. PMID 19852816 DOI: 10.1186/1756-0500-2-217  0.317
2008 Veitia RA, Bottani S, Birchler JA. Cellular reactions to gene dosage imbalance: genomic, transcriptomic and proteomic effects. Trends in Genetics : Tig. 24: 390-7. PMID 18585818 DOI: 10.1016/J.Tig.2008.05.005  0.338
2005 Kavi HH, Xie W, Fernandez HR, Birchler JA. Global analysis of siRNA-mediated transcriptional gene silencing. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 1209-12. PMID 16299769 DOI: 10.1002/Bies.20328  0.338
2005 Birchler JA, Riddle NC, Auger DL, Veitia RA. Dosage balance in gene regulation: biological implications. Trends in Genetics : Tig. 21: 219-26. PMID 15797617 DOI: 10.1016/J.Tig.2005.02.010  0.328
2005 Auger DL, Gray AD, Ream TS, Kato A, Coe EH, Birchler JA. Nonadditive gene expression in diploid and triploid hybrids of maize Genetics. 169: 389-397. PMID 15489529 DOI: 10.1534/Genetics.104.032987  0.305
2004 Pal-Bhadra M, Leibovitch BA, Gandhi SG, Chikka MR, Rao M, Bhadra U, Birchler JA, Elgin SC. Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery. Science (New York, N.Y.). 303: 669-72. PMID 14752161 DOI: 10.1126/Science.1092653  0.339
2004 PAL-BHADRA M, BHADRA U, BIRCHLER J. Interrelationship of RNAi and Transcriptional Gene Silencing in Drosophila Cold Spring Harbor Symposia On Quantitative Biology. 69: 1-6. DOI: 10.1101/SQB.2004.69.014  0.35
2003 Riddle NC, Birchler JA. Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids. Trends in Genetics : Tig. 19: 597-600. PMID 14585608 DOI: 10.1016/J.Tig.2003.09.005  0.301
2003 Birchler JA, Pal-Bhadra M, Bhadra U. Dosage dependent gene regulation and the compensation of the X chromosome in Drosophila males Genetica. 117: 179-190. PMID 12723697 DOI: 10.1023/A:1022935927763  0.313
2003 Osborn TC, Pires JC, Birchler JA, Auger DL, Chen ZJ, Lee HS, Comai L, Madlung A, Doerge RW, Colot V, Martienssen RA. Understanding mechanisms of novel gene expression in polyploids. Trends in Genetics : Tig. 19: 141-7. PMID 12615008 DOI: 10.1016/S0168-9525(03)00015-5  0.349
2002 Pal-Bhadra M, Bhadra U, Birchler JA. RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila Molecular Cell. 9: 315-327. PMID 11864605 DOI: 10.1016/S1097-2765(02)00440-9  0.344
2001 Cooper JL, Birchler JA. Developmental impact on trans-acting dosage effects in maize aneuploids Genesis. 31: 64-71. PMID 11668680 DOI: 10.1002/Gene.10006  0.303
2001 Birchler JA, Bhadra U, Bhadra MP, Auger DL. Dosage-dependent gene regulation in multicellular eukaryotes: Implications for dosage compensation, aneuploid syndromes, and quantitative traits Developmental Biology. 234: 275-288. PMID 11396999 DOI: 10.1006/Dbio.2001.0262  0.403
2000 Frolov MV, Benevolenskaya EV, Birchler JA. The oxen gene of drosophila encodes a homolog of subunit 9 of yeast ubiquinol-cytochrome c oxidoreductase complex: Evidence for modulation of gene expression in response to mitochondrial activity Genetics. 156: 1727-1736. PMID 11102369  0.412
2000 Bhadra U, Pal-Bhadra M, Birchler JA. Histone acetylation and gene expression analysis of Sex lethal mutants in drosophila Genetics. 155: 753-763. PMID 10835396  0.363
2000 Benevolenskaya EV, Frolov MV, Birchler JA. Kruppel homolog (Kr h) is a dosage-dependent modifier of gene expression in Drosophila Genetical Research. 75: 137-142. PMID 10816971 DOI: 10.1017/S0016672399004437  0.446
2000 Birchler JA, Pal Bhadra M, Bhadra U. Making noise about silence: Repression of repeated genes in animals Current Opinion in Genetics and Development. 10: 211-216. PMID 10753783 DOI: 10.1016/S0959-437X(00)00065-4  0.385
1999 Pal-Bhadra M, Bhadra U, Birchler JA. Cosuppression of nonhomologous transgenes in Drosophila involves mutually related endogenous sequences Cell. 99: 35-46. PMID 10520992 DOI: 10.1016/S0092-8674(00)80060-4  0.356
1998 Benevolenskaya EV, Frolov MV, Birchler JA. The sugarless mutation affects the expression of the white eye color gene in Drosophila melanogaster Molecular and General Genetics. 260: 131-143. PMID 9862465 DOI: 10.1007/S004380050879  0.436
1998 Frolov MV, Birchler JA. Mutation in P0, a dual function ribosomal protein/apurinic/apyrimidinic endonuclease, modifies gene expression and position effect variegation in Drosophila Genetics. 150: 1487-1495. PMID 9832526  0.404
1998 Pal Bhadra M, Bhadra U, Birchler JA. Role of multiple trans-acting regulators in modifying the effect of the retrotransposon copia on host gene expression in Drosophila Molecular and General Genetics. 259: 198-206. PMID 9747711 DOI: 10.1007/S004380050805  0.476
1998 Frolov MV, Benevolenskaya EV, Birchler JA. Regena (Rga), a Drosophila homolog of the global negative transcriptional regulator CDC36 (NOT2) from yeast, modifies gene expression and suppresses position effect variegation Genetics. 148: 317-329. PMID 9475742  0.429
1998 Bhadra U, Pal Bhadra M, Birchler JA. Interactions among dosage-dependent trans-acting modifiers of gene expression and position-effect variegation in Drosophila Genetics. 150: 251-263.  0.357
1997 Pal-Bhadra M, Bhadra U, Birchler JA. Cosuppression in Drosophila: Gene silencing of Alcohol dehydrogenase by white-Adh transgenes is Polycomb dependent Cell. 90: 479-490. PMID 9267028 DOI: 10.1016/S0092-8674(00)80508-5  0.389
1997 Bhadra U, Pal-Bhadra M, Birchler JA. A sex-influenced modifier in Drosophila that affects a broad spectrum of target loci including the histone repeats Genetics. 146: 903-917. PMID 9215896  0.448
1997 Bhadra U, Pal-Bhadra M, Birchler JA. A trans-acting modifier causing extensive overexpression of genes in Drosophila melanogaster Molecular and General Genetics. 254: 621-634. PMID 9202378 DOI: 10.1007/S004380050460  0.456
1996 Bhadra U, Birchler JA. Characterization of a sex-influenced modifier of gene expression and suppressor of position-effect variegation in Drosophila. Molecular & General Genetics : Mgg. 250: 601-13. PMID 8676863 DOI: 10.1007/Bf02174448  0.442
1994 Csink AK, Linsk R, Birchler JA. Mosaic suppressor, a gene in Drosophila that modifies retrotransposon expression and interacts with zeste. Genetics. 136: 573-83. PMID 8150284  0.639
1994 Csink AK, Linsk R, Birchler JA. The Lighten up (Lip) gene of Drosophila melanogaster, a modifier of retroelement expression, position effect variegation and white locus insertion alleles. Genetics. 138: 153-63. PMID 8001783  0.657
1993 Sabl JF, Birchler JA. Dosage dependent modifiers of white alleles in Drosophila melanogaster. Genetical Research. 62: 15-22. PMID 8405989 DOI: 10.1017/S0016672300031517  0.594
1992 Birchler JA. Expression of cis-regulatory mutations of the white locus in metafemales of Drosophila melanogaster. Genetical Research. 59: 11-8. PMID 1572532 DOI: 10.1017/S0016672300030123  0.34
1990 Rabinow L, Birchler J. Interactions among modifiers of retrotransposon-induced alleles of the white locus of Drosophila melanogaster. Genetical Research. 55: 141-51. PMID 2168335 DOI: 10.1017/S0016672300025453  0.36
1989 Birchler JA, Hiebert JC, Rabinow L. Interaction of the mottler of white with transposable element alleles at the white locus in Drosophila melanogaster. Genes & Development. 3: 73-84. PMID 2540060 DOI: 10.1101/Gad.3.1.73  0.433
1989 Rabinow L, Birchler JA. A dosage-sensitive modifier of retrotransposon-induced alleles of the Drosophila white locus. The Embo Journal. 8: 879-889. DOI: 10.1002/J.1460-2075.1989.Tb03449.X  0.437
1984 Birchler JA. Genetic analysis of the sexual dimorphism of glass in Drosophila melanogaster Genetical Research. 44: 125-132. DOI: 10.1017/S0016672300026331  0.337
Low-probability matches (unlikely to be authored by this person)
2009 Sun X, Birchler JA. Interaction study of the male specific lethal (MSL) complex and trans-acting dosage effects in metafemales of Drosophila melanogaster. Cytogenetic and Genome Research. 124: 298-311. PMID 19556782 DOI: 10.1159/000218134  0.3
2017 Birchler JA. Editing the Phenotype: A Revolution for Quantitative Genetics. Cell. 171: 269-270. PMID 28985558 DOI: 10.1016/J.Cell.2017.09.024  0.297
2014 Birchler JA. Interploidy hybridization barrier of endosperm as a dosage interaction. Frontiers in Plant Science. 5: 281. PMID 25018757 DOI: 10.3389/Fpls.2014.00281  0.295
2019 Xue W, Anderson SN, Wang X, Yang L, Crisp PA, Li Q, Noshay J, Albert PS, Birchler JA, Bilinski P, Stitzer MC, Ross-Ibarra J, Flint-Garcia S, Chen X, Springer NM, et al. Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize. Genetics. PMID 31320409 DOI: 10.1534/Genetics.119.302378  0.294
1997 Guo M, Birchler JA. Dosage regulation of Zea mays homeobox (ZmHox) genes and their relationship with the dosage-sensitive regulatory factors of Shrunken 1 (Sh1) in maize Developmental Genetics. 20: 67-73. DOI: 10.1002/(Sici)1520-6408(1997)20:1<67::Aid-Dvg8>3.0.Co;2-7  0.289
2008 Vega JM, Yu W, Han F, Kato A, Peters EM, Zhang ZJ, Birchler JA. Agrobacterium-mediated transformation of maize (Zea mays) with Cre-lox site specific recombination cassettes in BIBAC vectors. Plant Molecular Biology. 66: 587-98. PMID 18265944 DOI: 10.1007/S11103-007-9276-2  0.288
2011 Xie W, Liang C, Birchler JA. Inhibition of RNA interference and modulation of transposable element expression by cell death in Drosophila. Genetics. 188: 823-34. PMID 21596898 DOI: 10.1534/Genetics.111.128470  0.285
2019 Birchler JA, Veitia RA. Genomic Balance and Speciation. Epigenetics Insights. 12: 2516865719840291. PMID 30968064 DOI: 10.1177/2516865719840291  0.282
1999 Bhadra U, Pal-Bhadra M, Birchler JA. Role of the male specific lethal (msl) genes in modifying the effects of sex chromosomal dosage in Drosophila Genetics. 152: 249-268. PMID 10224258  0.28
2010 Veitia RA, Birchler JA. Dominance and gene dosage balance in health and disease: why levels matter! The Journal of Pathology. 220: 174-85. PMID 19827001 DOI: 10.1002/Path.2623  0.279
2005 Bhadra MP, Bhadra U, Kundu J, Birchler JA. Gene expression analysis of the function of the male-specific lethal complex in Drosophila. Genetics. 169: 2061-74. PMID 15716510 DOI: 10.1534/Genetics.104.036020  0.279
2012 Yu C, Han F, Zhang J, Birchler J, Peterson T. A transgenic system for generation of transposon Ac/Ds-induced chromosome rearrangements in rice. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 125: 1449-62. PMID 22798058 DOI: 10.1007/S00122-012-1925-4  0.278
2007 Birchler JA, Yao H, Chudalayandi S. Biological consequences of dosage dependent gene regulatory systems. Biochimica Et Biophysica Acta. 1769: 422-8. PMID 17276527 DOI: 10.1016/J.Bbaexp.2006.12.002  0.278
2013 Kanizay LB, Albert PS, Birchler JA, Dawe RK. Intragenomic conflict between the two major knob repeats of maize. Genetics. 194: 81-9. PMID 23457233 DOI: 10.1534/Genetics.112.148882  0.278
2006 Kavi HH, Fernandez HR, Xie W, Birchler JA. Polycomb, pairing and PIWI--RNA silencing and nuclear interactions. Trends in Biochemical Sciences. 31: 485-7. PMID 16876419 DOI: 10.1016/J.Tibs.2006.07.002  0.276
2009 Sun X, Birchler JA. Studies on the short range spreading of the male specific lethal (MSL) complex on the X chromosome in Drosophila. Cytogenetic and Genome Research. 124: 158-69. PMID 19420929 DOI: 10.1159/000207524  0.276
2001 Auger DL, Newton KJ, Birchler JA. Nuclear gene dosage effects upon the expression of maize mitochondrial genes Genetics. 157: 1711-1721. PMID 11290725  0.274
2014 Conant GC, Birchler JA, Pires JC. Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time. Current Opinion in Plant Biology. 19: 91-8. PMID 24907529 DOI: 10.1016/J.Pbi.2014.05.008  0.271
2018 Nani TF, Schnable JC, Washburn JD, Albert P, Pereira WA, Sobrinho FS, Birchler JA, Techio VH. Location of low copy genes in chromosomes of Brachiaria spp. Molecular Biology Reports. PMID 29330722 DOI: 10.1007/S11033-018-4144-5  0.27
2015 Li J, Hou J, Sun L, Wilkins JM, Lu Y, Niederhuth CE, Merideth BR, Mawhinney TP, Mossine VV, Greenlief CM, Walker JC, Folk WR, Hannink M, Lubahn DB, Birchler JA, et al. From Gigabyte to Kilobyte: A Bioinformatics Protocol for Mining Large RNA-Seq Transcriptomics Data. Plos One. 10: e0125000. PMID 25902288 DOI: 10.1371/Journal.Pone.0125000  0.27
2004 Pal-Bhadra M, Bhadra U, Birchler JA. Interrelationship of RNA interference and transcriptional gene silencing in Drosophila Cold Spring Harbor Symposia On Quantitative Biology. 69: 433-438. PMID 16117678 DOI: 10.1101/sqb.2004.69.433  0.268
2007 Lamb JC, Danilova T, Bauer MJ, Meyer JM, Holland JJ, Jensen MD, Birchler JA. Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes. Genetics. 175: 1047-58. PMID 17237520 DOI: 10.1534/Genetics.106.065573  0.268
2017 Veitia RA, Caburet S, Birchler JA. Mechanisms of Mendelian dominance. Clinical Genetics. PMID 28755412 DOI: 10.1111/Cge.13107  0.267
2013 Sun L, Fernandez HR, Donohue RC, Li J, Cheng J, Birchler JA. Male-specific lethal complex in Drosophila counteracts histone acetylation and does not mediate dosage compensation. Proceedings of the National Academy of Sciences of the United States of America. 110: E808-17. PMID 23382189 DOI: 10.1073/Pnas.1222542110  0.267
2011 Birchler J, Sun L, Fernandez H, Donohue R, Xie W, Sanyal A. Re-evaluation of the function of the male specific lethal complex in Drosophila. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 38: 327-32. PMID 21867958 DOI: 10.1016/J.Jgg.2011.07.001  0.266
2007 Birchler JA, Veitia RA. The gene balance hypothesis: from classical genetics to modern genomics. The Plant Cell. 19: 395-402. PMID 17293565 DOI: 10.1105/Tpc.106.049338  0.265
2013 Gaeta RT, Masonbrink RE, Zhao C, Sanyal A, Krishnaswamy L, Birchler JA. In vivo modification of a maize engineered minichromosome. Chromosoma. 122: 221-32. PMID 23519820 DOI: 10.1007/S00412-013-0403-3  0.264
2009 Birchler JA. Dosage compensation for the birds. Heredity. 102: 423-4. PMID 19223922 DOI: 10.1038/Hdy.2008.134  0.264
2016 Birchler JA, Johnson AF, Veitia RA. Kinetics genetics: Incorporating the concept of genomic balance into an understanding of quantitative traits. Plant Science : An International Journal of Experimental Plant Biology. 245: 128-34. PMID 26940497 DOI: 10.1016/J.Plantsci.2016.02.002  0.263
2016 Yu W, Birchler JA. A green fluorescent protein-engineered haploid inducer line facilitates haploid mutant screens and doubled haploid breeding in maize Molecular Breeding. 36: 1-12. DOI: 10.1007/S11032-015-0428-9  0.263
2013 Xie W, Donohue RC, Birchler JA. Quantitatively increased somatic transposition of transposable elements in Drosophila strains compromised for RNAi. Plos One. 8: e72163. PMID 23940807 DOI: 10.1371/Journal.Pone.0072163  0.261
2005 Matzke MA, Birchler JA. RNAi-mediated pathways in the nucleus Nature Reviews Genetics. 6: 24-35. PMID 15630419 DOI: 10.1038/Nrg1500  0.261
2017 Su H, Liu Y, Dong Q, Feng C, Zhang J, Liu Y, Birchler JA, Han F. Dynamic location changes of Bub1-phosphorylated-H2AThr133 with CENH3 nucleosome in maize centromeric regions. The New Phytologist. PMID 28079247 DOI: 10.1111/Nph.14415  0.261
2009 Wolfgruber TK, Sharma A, Schneider KL, Albert PS, Koo DH, Shi J, Gao Z, Han F, Lee H, Xu R, Allison J, Birchler JA, Jiang J, Dawe RK, Presting GG. Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons. Plos Genetics. 5: e1000743. PMID 19956743 DOI: 10.1371/Journal.Pgen.1000743  0.259
2018 Feng C, Su H, Han B, Wang R, Liu Y, Guo X, Liu C, Zhang J, Yuan J, Birchler JA, Han F. High efficiency genome editing using a dmc1 promoter-controlled CRISPR/Cas9 system in maize. Plant Biotechnology Journal. PMID 29569825 DOI: 10.1111/Pbi.12920  0.257
2006 Bhadra MP, Bhadra U, Birchler JA. Misregulation of sex-lethal and disruption of male-specific lethal complex localization in drosophila species hybrids Genetics. 174: 1151-1159. PMID 16951071 DOI: 10.1534/Genetics.106.060541  0.248
2011 Birchler JA, Veitia RA. Protein-Protein and Protein-DNA Dosage Balance and Differential Paralog Transcription Factor Retention in Polyploids. Frontiers in Plant Science. 2: 64. PMID 22645545 DOI: 10.3389/Fpls.2011.00064  0.248
2006 Birchler JA, Fernandez HR, Kavi HH. Commonalities in compensation Bioessays. 28: 565-568. PMID 16700062 DOI: 10.1002/Bies.20408  0.246
2007 Lamb JC, Meyer JM, Birchler JA. A hemicentric inversion in the maize line knobless Tama flint created two sites of centromeric elements and moved the kinetochore-forming region. Chromosoma. 116: 237-47. PMID 17256108 DOI: 10.1007/S00412-007-0096-6  0.246
1980 Birchler JA. On the nonautonomy of the small-kernel phenotype produced by B–A translocations in maize Genetical Research. 36: 111-116. DOI: 10.1017/S0016672300019716  0.243
2005 Della Vedova CB, Lorbiecke R, Kirsch H, Schulte MB, Scheets K, Borchert LM, Scheffler BE, Wienand U, Cone KC, Birchler JA. The dominant inhibitory chalcone synthase allele C2-Idf (inhibitor diffuse) from Zea mays (L.) acts via an endogenous RNA silencing mechanism. Genetics. 170: 1989-2002. PMID 15956664 DOI: 10.1534/Genetics.105.043406  0.243
2015 Liu Y, Su H, Zhang J, Liu Y, Han F, Birchler JA. Dynamic epigenetic states of maize centromeres. Frontiers in Plant Science. 6: 904. PMID 26579154 DOI: 10.3389/Fpls.2015.00904  0.243
2010 Albert PS, Gao Z, Danilova TV, Birchler JA. Diversity of chromosomal karyotypes in maize and its relatives. Cytogenetic and Genome Research. 129: 6-16. PMID 20551613 DOI: 10.1159/000314342  0.242
2019 do Vale Martins L, Yu F, Zhao H, Dennison T, Lauter N, Wang H, Deng Z, Thompson A, Semrau K, Rouillard JM, Birchler JA, Jiang J. Meiotic crossovers characterized by haplotype-specific chromosome painting in maize. Nature Communications. 10: 4604. PMID 31601818 DOI: 10.1038/S41467-019-12646-Z  0.241
1999 Birchler J, Langdale J, Chandler V. Jumping genes and maize genomics Trends in Plant Science. 4: 205-206.  0.241
2013 Maron LG, Guimarães CT, Kirst M, Albert PS, Birchler JA, Bradbury PJ, Buckler ES, Coluccio AE, Danilova TV, Kudrna D, Magalhaes JV, Piñeros MA, Schatz MC, Wing RA, Kochian LV. Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America. 110: 5241-6. PMID 23479633 DOI: 10.1073/Pnas.1220766110  0.24
2013 Fu S, Lv Z, Gao Z, Wu H, Pang J, Zhang B, Dong Q, Guo X, Wang XJ, Birchler JA, Han F. De novo centromere formation on a chromosome fragment in maize. Proceedings of the National Academy of Sciences of the United States of America. 110: 6033-6. PMID 23530217 DOI: 10.1073/Pnas.1303944110  0.238
2011 Birchler JA, Sun L, Donohue R, Sanyal A, Xie W. Implications of the gene balance hypothesis for dosage compensation Frontiers in Biology. 6: 118-124. DOI: 10.1007/S11515-011-1121-Y  0.236
2007 Lamb JC, Riddle NC, Cheng YM, Theuri J, Birchler JA. Localization and transcription of a retrotransposon-derived element on the maize B chromosome. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 15: 383-98. PMID 17429746 DOI: 10.1007/S10577-007-1135-0  0.236
2009 Zhang J, Yu C, Pulletikurti V, Lamb J, Danilova T, Weber DF, Birchler J, Peterson T. Alternative Ac/Ds transposition induces major chromosomal rearrangements in maize. Genes & Development. 23: 755-65. PMID 19299561 DOI: 10.1101/Gad.1776909  0.232
2011 Kato A, Lamb JC, Albert PS, Danilova T, Han F, Gao Z, Findley S, Birchler JA. Chromosome painting for plant biotechnology. Methods in Molecular Biology (Clifton, N.J.). 701: 67-96. PMID 21181525 DOI: 10.1007/978-1-61737-957-4_4  0.229
2016 Wolfgruber TK, Nakashima MM, Schneider KL, Sharma A, Xie Z, Albert PS, Xu R, Bilinski P, Dawe RK, Ross-Ibarra J, Birchler JA, Presting GG. High Quality Maize Centromere 10 Sequence Reveals Evidence of Frequent Recombination Events. Frontiers in Plant Science. 7: 308. PMID 27047500 DOI: 10.3389/Fpls.2016.00308  0.228
1987 Birchler JA, Hart JR. Interaction of Endosperm Size Factors in Maize Genetics. 117: 309-317. DOI: 10.1093/genetics/117.2.309  0.227
2011 Gao Z, Fu S, Dong Q, Han F, Birchler JA. Inactivation of a centromere during the formation of a translocation in maize. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 19: 755-61. PMID 21947957 DOI: 10.1007/S10577-011-9240-5  0.227
2016 Birchler JA. Parallel Universes for Models of X Chromosome Dosage Compensation in Drosophila: A Review. Cytogenetic and Genome Research. PMID 27166165 DOI: 10.1159/000445924  0.227
2010 Birchler JA. X chromosome dosage compensation in Drosophila. Science (New York, N.Y.). 272: 1190a. PMID 17792629 DOI: 10.1126/Science.272.5265.1190A  0.226
2010 Findley SD, Cannon S, Varala K, Du J, Ma J, Hudson ME, Birchler JA, Stacey G. A fluorescence in situ hybridization system for karyotyping soybean. Genetics. 185: 727-44. PMID 20421607 DOI: 10.1534/Genetics.109.113753  0.225
2007 Yu W, Lamb JC, Han F, Birchler JA. Cytological visualization of DNA transposons and their transposition pattern in somatic cells of maize. Genetics. 175: 31-9. PMID 17057234 DOI: 10.1534/Genetics.106.064238  0.225
2005 Ream TS, Strobel J, Roller B, Auger DL, Kato A, Halbrook C, Peters EM, Theuri J, Bauer MJ, Addae P, Dioh W, Staub JM, Gilbertson LA, Birchler JA. A test for ectopic exchange catalyzed by Cre recombinase in maize. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 111: 378-85. PMID 15912343 DOI: 10.1007/S00122-005-2031-7  0.224
2006 Birchler JA, Yao H, Chudalayandi S. Unraveling the genetic basis of hybrid vigor Proceedings of the National Academy of Sciences of the United States of America. 103: 12957-12958. PMID 16938847 DOI: 10.1073/Pnas.0605627103  0.222
2004 Auger DL, Ream TS, Birchler JA. A test for a metastable epigenetic component of heterosis using haploid induction in maize Theoretical and Applied Genetics. 108: 1017-1023. PMID 15067387 DOI: 10.1007/S00122-003-1521-8  0.222
2012 Fu S, Gao Z, Birchler J, Han F. Dicentric chromosome formation and epigenetics of centromere formation in plants. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 39: 125-30. PMID 22464471 DOI: 10.1016/J.Jgg.2012.01.006  0.221
2007 Lamb JC, Meyer JM, Corcoran B, Kato A, Han F, Birchler JA. Distinct chromosomal distributions of highly repetitive sequences in maize. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 15: 33-49. PMID 17295125 DOI: 10.1007/S10577-006-1102-1  0.221
2015 Yu W, Yau YY, Birchler JA. Plant artificial chromosome technology and its potential application in genetic engineering. Plant Biotechnology Journal. PMID 26369910 DOI: 10.1111/Pbi.12466  0.219
2015 Birchler JA. Engineered minichromosomes in plants. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 23: 77-85. PMID 25596825 DOI: 10.1007/S10577-014-9454-4  0.218
2020 Guo Z, Cui Y, Shi X, Birchler JA, Albizua I, Sherman S, Qin ZS, Ji T. An empirical bayesian approach for testing gene expression fold change and its application in detecting global dosage effects Nar Genomics and Bioinformatics. 2. DOI: 10.1093/nargab/lqaa072  0.217
2019 Feng C, Yuan J, Bai H, Liu Y, Su H, Liu Y, Shi L, Gao Z, Birchler JA, Han F. The deposition of CENH3 in maize is stringently regulated. The Plant Journal : For Cell and Molecular Biology. PMID 31713923 DOI: 10.1111/Tpj.14606  0.217
2012 Gaeta RT, Masonbrink RE, Krishnaswamy L, Zhao C, Birchler JA. Synthetic chromosome platforms in plants. Annual Review of Plant Biology. 63: 307-30. PMID 22136564 DOI: 10.1146/Annurev-Arplant-042110-103924  0.216
2005 Kato A, Vega JM, Han F, Lamb JC, Birchler JA. Advances in plant chromosome identification and cytogenetic techniques. Current Opinion in Plant Biology. 8: 148-54. PMID 15752994 DOI: 10.1016/J.Pbi.2005.01.014  0.215
2007 Yu W, Han F, Birchler JA. Engineered minichromosomes in plants. Current Opinion in Biotechnology. 18: 425-31. PMID 17977710 DOI: 10.1036/1097-8542.Yb090068  0.214
2020 Liu Y, Su H, Zhang J, Shi L, Liu Y, Zhang B, Bai H, Liang S, Gao Z, Birchler JA, Han F. Rapid Birth or Death of Centromeres on Fragmented Chromosomes in Maize. The Plant Cell. PMID 32817254 DOI: 10.1105/Tpc.20.00389  0.214
2013 Yao H, Dogra Gray A, Auger DL, Birchler JA. Genomic dosage effects on heterosis in triploid maize. Proceedings of the National Academy of Sciences of the United States of America. 110: 2665-9. PMID 23359717 DOI: 10.1073/Pnas.1221966110  0.213
2009 Birchler JA, Han F. Maize centromeres: structure, function, epigenetics. Annual Review of Genetics. 43: 287-303. PMID 19689211 DOI: 10.1146/Annurev-Genet-102108-134834  0.213
2017 Liu Y, Su H, Liu Y, Zhang J, Dong Q, Birchler JA, Han F. Cohesion and centromere activity are required for histone H3 phosphorylation in maize. The Plant Journal : For Cell and Molecular Biology. PMID 29032586 DOI: 10.1111/Tpj.13748  0.212
2015 Ellis NA, Douglas RN, Jackson CE, Birchler JA, Dawe RK. Generation of a Maize B Centromere Minimal Map Containing the Central Core Domain. G3 (Bethesda, Md.). PMID 26511496 DOI: 10.1534/G3.115.022889  0.211
2018 Han F, Lamb JC, McCaw ME, Gao Z, Zhang B, Swyers NC, Birchler JA. Meiotic Studies on Combinations of Chromosomes With Different Sized Centromeres in Maize. Frontiers in Plant Science. 9: 785. PMID 29951076 DOI: 10.3389/Fpls.2018.00785  0.211
2006 Han F, Lamb JC, Birchler JA. High frequency of centromere inactivation resulting in stable dicentric chromosomes of maize. Proceedings of the National Academy of Sciences of the United States of America. 103: 3238-43. PMID 16492777 DOI: 10.1073/Pnas.0509650103  0.21
2004 Kato A, Lamb JC, Birchler JA. Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proceedings of the National Academy of Sciences of the United States of America. 101: 13554-9. PMID 15342909 DOI: 10.1073/Pnas.0403659101  0.209
2005 Kato A, Zheng YZ, Auger DL, Phelps-Durr T, Bauer MJ, Lamb JC, Birchler JA. Minichromosomes derived from the B chromosome of maize Cytogenetic and Genome Research. 109: 156-165. PMID 15753572 DOI: 10.1159/000082395  0.209
2006 Bauer MJ, Birchler JA. Organization of endoreduplicated chromosomes in the endosperm of Zea mays L. Chromosoma. 115: 383-94. PMID 16741707 DOI: 10.1007/S00412-006-0068-2  0.209
2020 Yao H, Srivastava S, Swyers N, Han F, Doerge RW, Birchler JA. Inbreeding Depression in Genotypically Matched Diploid and Tetraploid Maize. Frontiers in Genetics. 11: 564928. PMID 33329701 DOI: 10.3389/fgene.2020.564928  0.208
2011 Yao H, Kato A, Mooney B, Birchler JA. Phenotypic and gene expression analyses of a ploidy series of maize inbred Oh43. Plant Molecular Biology. 75: 237-51. PMID 21188620 DOI: 10.1007/S11103-010-9722-4  0.208
2004 Birchler JA, Kavi HH, Fernandez HR. Heterochromatin: RNA points the way Current Biology. 14: R759-R761. PMID 15380087 DOI: 10.1016/J.Cub.2004.09.014  0.208
2011 Gaeta RT, Danilova TV, Zhao C, Masonbrink RE, McCaw ME, Birchler JA. Recovery of a telomere-truncated chromosome via a compensating translocation in maize. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 54: 184-95. PMID 21423281 DOI: 10.1139/G10-108  0.208
2015 Veitia RA, Veyrunes F, Bottani S, Birchler JA. X chromosome inactivation and active X upregulation in therian mammals: facts, questions, and hypotheses. Journal of Molecular Cell Biology. 7: 2-11. PMID 25564545 DOI: 10.1093/Jmcb/Mjv001  0.208
2008 Jin W, Lamb JC, Zhang W, Kolano B, Birchler JA, Jiang J. Histone modifications associated with both A and B chromosomes of maize. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 1203-14. PMID 18987983 DOI: 10.1007/S10577-008-1269-8  0.207
2009 Birchler JA, Gao Z, Han F. A tale of two centromeres--diversity of structure but conservation of function in plants and animals. Functional & Integrative Genomics. 9: 7-13. PMID 19083033 DOI: 10.1007/S10142-008-0104-9  0.207
2014 Birchler JA. Engineered minichromosomes in plants. Current Opinion in Plant Biology. 19: 76-80. PMID 24906050 DOI: 10.1016/J.Pbi.2014.05.009  0.207
2018 Birchler JA, Han F. Barbara McClintock's Unsolved Chromosomal Mysteries: Parallels to common rearrangements and karyotype evolution. The Plant Cell. PMID 29545470 DOI: 10.1105/Tpc.17.00989  0.206
2009 Han F, Gao Z, Birchler JA. Reactivation of an inactive centromere reveals epigenetic and structural components for centromere specification in maize. The Plant Cell. 21: 1929-39. PMID 19602622 DOI: 10.1105/Tpc.109.066662  0.206
2005 Lamb JC, Kato A, Birchler JA. Sequences associated with A chromosome centromeres are present throughout the maize B chromosome. Chromosoma. 113: 337-49. PMID 15586285 DOI: 10.1007/S00412-004-0319-Z  0.206
2011 Yin W, Birchler JA, Han F. Maize centromeres: Where sequence meets epigenetics Frontiers in Biology. 6: 102-108. DOI: 10.1007/S11515-011-1118-6  0.206
2015 Liu Y, Su H, Pang J, Gao Z, Wang XJ, Birchler JA, Han F. Sequential de novo centromere formation and inactivation on a chromosomal fragment in maize. Proceedings of the National Academy of Sciences of the United States of America. 112: E1263-71. PMID 25733907 DOI: 10.1073/Pnas.1418248112  0.206
2006 Yu W, Han F, Kato A, Birchler JA. Characterization of a maize isochromosome 8S•8S Genome. 49: 700-706. PMID 16936849 DOI: 10.1139/G06-019  0.206
2006 Yu W, Lamb JC, Han F, Birchler JA. Telomere-mediated chromosomal truncation in maize. Proceedings of the National Academy of Sciences of the United States of America. 103: 17331-6. PMID 17085598 DOI: 10.1073/Pnas.0605750103  0.205
2010 Roark LM, Hui AY, Donnelly L, Birchler JA, Newton KJ. Recent and frequent insertions of chloroplast DNA into maize nuclear chromosomes. Cytogenetic and Genome Research. 129: 17-23. PMID 20628248 DOI: 10.1159/000312724  0.205
2012 Birchler JA, Presting GG. Retrotransposon insertion targeting: a mechanism for homogenization of centromere sequences on nonhomologous chromosomes. Genes & Development. 26: 638-40. PMID 22474258 DOI: 10.1101/Gad.191049.112  0.205
2020 Birchler JA, Swyers NC. Engineered minichromosomes in plants. Experimental Cell Research. 111852. PMID 31972219 DOI: 10.1016/J.Yexcr.2020.111852  0.205
2020 Liu Y, Wang C, Su H, Birchler JA, Han F. Phosphorylation of histone H3 by Haspin regulates chromosome alignment and segregation in maize mitosis. Journal of Experimental Botany. PMID 33130883 DOI: 10.1093/jxb/eraa506  0.205
2007 Lamb JC, Yu W, Han F, Birchler JA. Plant chromosomes from end to end: telomeres, heterochromatin and centromeres. Current Opinion in Plant Biology. 10: 116-22. PMID 17291819 DOI: 10.1016/J.Pbi.2007.01.008  0.204
2012 Masonbrink RE, Birchler JA. Accumulation of multiple copies of maize minichromosomes. Cytogenetic and Genome Research. 137: 50-9. PMID 22832003 DOI: 10.1159/000339615  0.204
2020 Braz GT, Yu F, Zhao H, Deng Z, Birchler JA, Jiang J. Preferential meiotic chromosome pairing among homologous chromosomes with cryptic sequence variation in tetraploid maize. The New Phytologist. PMID 33222183 DOI: 10.1111/nph.17098  0.204
2007 Yu W, Han F, Gao Z, Vega JM, Birchler JA. Construction and behavior of engineered minichromosomes in maize. Proceedings of the National Academy of Sciences of the United States of America. 104: 8924-9. PMID 17502617 DOI: 10.1073/Pnas.0700932104  0.203
2011 Birchler JA, Xie W. Reflections on the inhibition of RNAi by cell death signaling. Fly. 5: 337-9. PMID 21795852 DOI: 10.4161/Fly.5.4.17370  0.203
2007 Han F, Gao Z, Yu W, Birchler JA. Minichromosome analysis of chromosome pairing, disjunction, and sister chromatid cohesion in maize. The Plant Cell. 19: 3853-63. PMID 18083907 DOI: 10.1105/Tpc.107.055905  0.203
2006 Lamb JC, Birchler JA. Retroelement genome painting: cytological visualization of retroelement expansions in the genera Zea and Tripsacum. Genetics. 173: 1007-21. PMID 16582446 DOI: 10.1534/Genetics.105.053165  0.202
2020 Chen C, Hou J, Shi X, Yang H, Birchler JA, Cheng J. GNET2: an R package for constructing gene regulatory networks from transcriptomic data. Bioinformatics (Oxford, England). PMID 33270838 DOI: 10.1093/bioinformatics/btaa902  0.201
2009 Birchler JA, Gao Z, Han F. Pairing in plants: Import is important. Proceedings of the National Academy of Sciences of the United States of America. 106: 19751-2. PMID 19923432 DOI: 10.1073/Pnas.0911849106  0.201
2005 Kavi HH, Fernandez HR, Xie W, Birchler JA. RNA silencing in Drosophila. Febs Letters. 579: 5940-9. PMID 16198344 DOI: 10.1016/J.Febslet.2005.08.069  0.2
2013 Masonbrink RE, Fu S, Han F, Birchler JA. Heritable loss of replication control of a minichromosome derived from the B chromosome of maize. Genetics. 193: 77-84. PMID 23114381 DOI: 10.1534/Genetics.112.146126  0.2
2005 Jin W, Lamb JC, Vega JM, Dawe RK, Birchler JA, Jiang J. Molecular and functional dissection of the maize B chromosome centromere. The Plant Cell. 17: 1412-23. PMID 15805482 DOI: 10.1105/Tpc.104.030643  0.2
2007 Han F, Lamb JC, Yu W, Gao Z, Birchler JA. Centromere function and nondisjunction are independent components of the maize B chromosome accumulation mechanism. The Plant Cell. 19: 524-33. PMID 17322406 DOI: 10.1105/Tpc.106.049577  0.199
2001 Frolov MV, Benevolenskaya EV, Birchler JA. Molecular analysis of a novel Drosophila diacylglycerol kinase, DGKε Biochimica Et Biophysica Acta - Molecular Cell Research. 1538: 339-352. PMID 11336805 DOI: 10.1016/S0167-4889(01)00085-4  0.198
2011 Findley SD, Pappas AL, Cui Y, Birchler JA, Palmer RG, Stacey G. Fluorescence in situ hybridization-based karyotyping of soybean translocation lines. G3 (Bethesda, Md.). 1: 117-29. PMID 22384324 DOI: 10.1534/G3.111.000034  0.198
1998 Kaszás E, Birchler JA. Meiotic transmission rates correlate with physical features of rearranged centromeres in maize Genetics. 150: 1683-1692. PMID 9832542  0.195
2016 Birchler JA. Marcus Rhoades on Preferential Segregation in Maize. Genetics. 203: 1489-90. PMID 27516610 DOI: 10.1534/Genetics.116.193011  0.195
2015 Lough AN, Faries KM, Koo DH, Hussain A, Roark LM, Langewisch TL, Backes T, Kremling KA, Jiang J, Birchler JA, Newton KJ. Cytogenetic and Sequence Analyses of Mitochondrial DNA Insertions in Nuclear Chromosomes of Maize. G3 (Bethesda, Md.). PMID 26333837 DOI: 10.1534/G3.115.020677  0.195
2008 Danilova TV, Birchler JA. Integrated cytogenetic map of mitotic metaphase chromosome 9 of maize: resolution, sensitivity, and banding paint development. Chromosoma. 117: 345-56. PMID 18317793 DOI: 10.1007/S00412-008-0151-Y  0.194
2008 Lough AN, Roark LM, Kato A, Ream TS, Lamb JC, Birchler JA, Newton KJ. Mitochondrial DNA transfer to the nucleus generates extensive insertion site variation in maize. Genetics. 178: 47-55. PMID 18202357 DOI: 10.1534/Genetics.107.079624  0.192
2011 Birchler JA, Gao Z, Sharma A, Presting GG, Han F. Epigenetic aspects of centromere function in plants. Current Opinion in Plant Biology. 14: 217-22. PMID 21411364 DOI: 10.1016/J.Pbi.2011.02.004  0.192
2008 Birchler JA, Yu W, Han F. Plant engineered minichromosomes and artificial chromosome platforms. Cytogenetic and Genome Research. 120: 228-32. PMID 18504351 DOI: 10.1159/000121071  0.192
2016 Birchler JA. Plant science: Hybrid vigour characterized. Nature. PMID 27602522 DOI: 10.1038/Nature19433  0.191
2007 Birchler JA, Albert PS, Gao Z. Stability of Repeated Sequence Clusters in Hybrids of Maize as Revealed by FISH Tropical Plant Biology. 1: 34-39. DOI: 10.1007/S12042-007-9001-Y  0.191
2015 Graham ND, Cody JP, Swyers NC, McCaw ME, Zhao C, Birchler JA. Engineered Minichromosomes in Plants: Structure, Function, and Applications. International Review of Cell and Molecular Biology. 318: 63-119. PMID 26315884 DOI: 10.1016/Bs.Ircmb.2015.05.002  0.191
2013 Murata M, Birchler JA. Arabidopsis Centromeres Plant Centromere Biology. 1-14. DOI: 10.1002/9781118525715.ch1  0.189
2009 Birchler JA. Role of small RNAs in establishing chromosomal architecture in drosophila Epigenomics. 177-185. DOI: 10.1007/978-1-4020-9187-2_11  0.189
2014 Zhang J, Zhang B, Su H, Birchler JA, Han F. Molecular mechanisms of homologous chromosome pairing and segregation in plants. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 41: 117-23. PMID 24656232 DOI: 10.1016/J.Jgg.2013.12.003  0.189
2015 Cody JP, Swyers NC, McCaw ME, Graham ND, Zhao C, Birchler JA. Minichromosomes: Vectors for crop improvement Agronomy. 5: 309-321. DOI: 10.3390/Agronomy5030309  0.188
2020 McCaw M, Graham N, Cody J, Swyers N, Zhao C, Birchler J. Fluorescence In Situ Hybridization to Maize (Zea mays) Chromosomes. Current Protocols in Plant Biology. 1: 530-545. PMID 31725962 DOI: 10.1002/CPPB.20033  0.188
2005 Theuri J, Phelps-Durr T, Mathews S, Birchler J. A comparative study of retrotransposons in the centromeric regions of A and B chromosomes of maize Cytogenetic and Genome Research. 110: 203-208. PMID 16093673 DOI: 10.1159/000084953  0.188
2001 Page BT, Wanous MK, Birchler JA. Characterization of a maize chromosome 4 centromeric sequence: Evidence for an evolutionary relationship with the B chromosome centromere Genetics. 159: 291-302. PMID 11560905  0.187
2013 Gao Z, Han F, Danilova TV, Lamb JC, Albert PS, Birchler JA. Labeling meiotic chromosomes in maize with fluorescence in situ hybridization. Methods in Molecular Biology (Clifton, N.J.). 990: 35-43. PMID 23559200 DOI: 10.1007/978-1-62703-333-6_4  0.185
2019 Albert PS, Zhang T, Semrau K, Rouillard JM, Kao YH, Wang CR, Danilova TV, Jiang J, Birchler JA. Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships. Proceedings of the National Academy of Sciences of the United States of America. PMID 30655344 DOI: 10.1073/Pnas.1813957116  0.184
2008 Riddle NC, Birchler JA. Comparative analysis of inbred and hybrid maize at the diploid and tetraploid levels. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 116: 563-76. PMID 18080809 DOI: 10.1007/S00122-007-0691-1  0.182
2016 Birchler JA. Curt Stern on Somatic Crossing Over. Genetics. 203: 615-6. PMID 27270694 DOI: 10.1534/Genetics.116.190652  0.182
2002 Kaszás É, Kato A, Birchler JA. Cytological and molecular analysis of centromere misdivision in maize Genome. 45: 759-768. PMID 12175080 DOI: 10.1139/G02-023  0.18
2005 Auger DL, Peters EM, Birchler JA. A genetic test of bioactive gibberellins as regulators of heterosis in maize. The Journal of Heredity. 96: 614-7. PMID 16135703 DOI: 10.1093/Jhered/Esi102  0.18
2004 Phelps-Durr TL, Birchler JA. An asymptotic determination of minimum centromere size for the maize B chromosome Cytogenetic and Genome Research. 106: 309-313. PMID 15292608 DOI: 10.1159/000079304  0.18
2015 Birchler JA, Graham ND, Swyers NC, Cody JP, McCaw ME. Plant minichromosomes. Current Opinion in Biotechnology. 37: 135-142. PMID 26723011 DOI: 10.1016/j.copbio.2015.11.007  0.179
1996 Kaszás E, Birchler JA. Misdivision analysis of centromere structure in maize. The Embo Journal. 15: 5246-5255. DOI: 10.1002/J.1460-2075.1996.Tb00910.X  0.179
2008 Lamb JC, Yu W, Han F, Birchler JA. Plant centromeres. Genome Dynamics. 4: 95-107. PMID 18756080 DOI: 10.1159/000126009  0.178
2015 Feng C, Liu Y, Su H, Wang H, Birchler J, Han F. Recent advances in plant centromere biology. Science China. Life Sciences. 58: 240-5. PMID 25682396 DOI: 10.1007/S11427-015-4818-3  0.178
2011 Koo DH, Han F, Birchler JA, Jiang J. Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome. Genome Research. 21: 908-14. PMID 21518739 DOI: 10.1101/Gr.116202.110  0.177
2020 Braz GT, do Vale Martins L, Zhang T, Albert PS, Birchler JA, Jiang J. A universal chromosome identification system for maize and wild Zea species. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 32219602 DOI: 10.1007/S10577-020-09630-5  0.176
2017 Findley SD, Birchler JA, Stacey G. Metaphase Chromosome Preparation from Soybean (Glycine max) Root Tips. Current Protocols in Plant Biology. 2: 78-88. PMID 31725978 DOI: 10.1002/cppb.20046  0.176
2020 Cody JP, Graham ND, Zhao C, Swyers NC, Birchler JA. Site-specific recombinase genome engineering toolkit in maize. Plant Direct. 4: e00209. PMID 32166212 DOI: 10.1002/pld3.209  0.175
2018 Bilinski P, Albert PS, Berg JJ, Birchler JA, Grote MN, Lorant A, Quezada J, Swarts K, Yang J, Ross-Ibarra J. Parallel altitudinal clines reveal trends in adaptive evolution of genome size in Zea mays. Plos Genetics. 14: e1007162. PMID 29746459 DOI: 10.1371/Journal.Pgen.1007162  0.17
2002 Zhong CX, Marshall JB, Topp C, Mroczek R, Kato A, Nagaki K, Birchler JA, Jiang J, Dawe RK. Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. The Plant Cell. 14: 2825-36. PMID 12417704 DOI: 10.1105/Tpc.006106  0.169
2012 Masonbrink RE, Gaeta RT, Birchler JA. Multiple maize minichromosomes in meiosis. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 20: 395-402. PMID 22552914 DOI: 10.1007/S10577-012-9283-2  0.167
2015 Veitia RA, Birchler JA. Models of buffering of dosage imbalances in protein complexes. Biology Direct. 10: 42. PMID 26275824 DOI: 10.1186/S13062-015-0063-8  0.166
2013 Birchler JA, Han F. Meiotic behavior of small chromosomes in maize. Frontiers in Plant Science. 4: 505. PMID 24381575 DOI: 10.3389/Fpls.2013.00505  0.166
2009 Birchler JA. Ubiquitous RNA-dependent RNA polymerase and gene silencing. Genome Biology. 10: 243. PMID 19951394 DOI: 10.1186/Gb-2009-10-11-243  0.165
2016 Veitia RA, Govindaraju DR, Bottani S, Birchler JA. Aging: Somatic Mutations, Epigenetic Drift and Gene Dosage Imbalance. Trends in Cell Biology. PMID 27939088 DOI: 10.1016/J.Tcb.2016.11.006  0.164
2018 Su H, Liu Y, Liu Y, Birchler JA, Han F. The Behavior of the Maize B Chromosome and Centromere. Genes. 9. PMID 30275397 DOI: 10.3390/Genes9100476  0.164
2002 Auger DL, Birchler JA. Maize tertiary trisomic stocks derived from B-A translocations Journal of Heredity. 93: 42-47. PMID 12011174 DOI: 10.1093/Jhered/93.1.42  0.163
2020 McCaw M, Swyers N, Graham N, Cody J, Zhao C, Birchler J. Preparation of Chromosomes from Zea mays. Current Protocols in Plant Biology. 1: 501-509. PMID 31725957 DOI: 10.1002/CPPB.20032  0.162
2003 Birchler JA, Kelly Dawe R, Doebley JF. Marcus Rhoades, preferential segregation and meiotic drive Genetics. 164: 835-841. PMID 12871897  0.161
2012 Birchler JA. Messing with Mendel. Developmental Cell. 23: 678-9. PMID 23079594 DOI: 10.1016/J.Devcel.2012.10.004  0.16
2016 McCaw ME, Wallace JG, Albert PS, Buckler ES, Birchler JA. Fast-Flowering Mini-Maize: Seed to Seed in 60 Days. Genetics. PMID 27440866 DOI: 10.1534/Genetics.116.191726  0.16
1982 Birchler JA, Owenby RK, Jacobson KB. DOSAGE COMPENSATION OF SERINE-4 TRANSFER RNA IN DROSOPHILA MELANOGASTER Genetics. 102: 525-537. DOI: 10.1093/genetics/102.3.525  0.158
2015 Birchler JA. Promises and pitfalls of synthetic chromosomes in plants. Trends in Biotechnology. 33: 189-94. PMID 25624060 DOI: 10.1016/J.Tibtech.2014.12.010  0.155
2005 Kato A, Lamb JC, Han F, Vega J, Birchler JA. Molecular analysis of maize chromosomes Maydica. 50: 311-320.  0.153
2019 Washburn JD, McElfresh MJ, Birchler JA. Progressive heterosis in genetically defined tetraploid maize. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 31444136 DOI: 10.1016/J.Jgg.2019.02.010  0.153
2008 Kavi HH, Fernandez H, Xie W, Birchler JA. Genetics and biochemistry of RNAi in Drosophila. Current Topics in Microbiology and Immunology. 320: 37-75. PMID 18268839 DOI: 10.1007/978-3-540-75157-1_3  0.152
2016 Graham N, Swyers N, Cody J, McCaw M, Zhao C, Birchler JA. Production of Engineered Minichromosome Vectors via the Introduction of Telomere Sequences. Methods in Molecular Biology (Clifton, N.J.). 1469: 1-13. PMID 27557682 DOI: 10.1007/978-1-4939-4931-1_1  0.151
2014 Birchler JA. Does ectopic cell death cause somatic mutations in the neighboring cells by activating transposons? Mobile Genetic Elements. 4: e28040. PMID 24567848 DOI: 10.4161/mge.28040  0.15
2015 Birchler JA. Heterosis: The genetic basis of hybrid vigour. Nature Plants. 1: 15020. PMID 27246887 DOI: 10.1038/Nplants.2015.20  0.148
2009 Kavi HH, Birchler JA. Interaction of RNA polymerase II and the small RNA machinery affects heterochromatic silencing in Drosophila. Epigenetics & Chromatin. 2: 15. PMID 19917092 DOI: 10.1186/1756-8935-2-15  0.147
2006 Riddle NC, Kato A, Birchler JA. Genetic variation for the response to ploidy change in Zea mays L. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 101-11. PMID 17053922 DOI: 10.1007/S00122-006-0414-Z  0.147
1990 Birchler J. Amaizing results. Trends in Genetics : Tig. 6: 231-3. PMID 2173181 DOI: 10.1016/0168-9525(90)90188-c  0.143
2009 Birchler JA, Bass HW. Cytogenetics and chromosomal structural diversity Handbook of Maize: Genetics and Genomics. 163-177. DOI: 10.1007/978-0-387-77863-1_8  0.138
2017 Findley SD, Birchler JA, Stacey G. Fluorescence In Situ Hybridization for Glycine max Metaphase Chromosomes. Current Protocols in Plant Biology. 2: 89-107. PMID 31725974 DOI: 10.1002/cppb.20045  0.136
2013 Lukaszewski AJ, Birchler JA. Misdivision of Centromeres Plant Centromere Biology. 111-128. DOI: 10.1002/9781118525715.ch9  0.134
2013 Jiang J, Birchler JA. Rice Centromeres Plant Centromere Biology. 15-24. DOI: 10.1002/9781118525715.ch2  0.134
2003 Lamb JC, Birchler JA. The role of DNA sequence in centromere formation. Genome Biology. 4: 214. PMID 12734002 DOI: 10.1186/Gb-2003-4-5-214  0.133
2008 Yu W, Birchler JA. Application of plant artificial chromosomes in biotechnology Journal of Biotechnology. 136: S239. DOI: 10.1016/J.Jbiotec.2008.07.507  0.132
2012 Birchler JA. Claims and counterclaims of X-chromosome compensation. Nature Structural & Molecular Biology. 19: 3-5. PMID 22218288 DOI: 10.1038/Nsmb.2218  0.128
2003 Jiang J, Birchler JA, Parrott WA, Dawe RK. A molecular view of plant centromeres Trends in Plant Science. 8: 570-575. PMID 14659705 DOI: 10.1016/J.Tplants.2003.10.011  0.126
1979 Birchler JA, Schwartz D. Mutational study of the alcohol dehydrogenase-1 FCm duplication in maize. Biochemical Genetics. 17: 1173-80. PMID 395948 DOI: 10.1007/Bf00504355  0.126
2003 Riddle NC, Birchler JA. Book Review:The Role of Chromosomal Change in Plant Evolution Bioessays. 25: 918-919. DOI: 10.1002/Bies.10334  0.124
2004 Lamb JC, Theuri J, Birchler JA. What's in a centromere? Genome Biology. 5: 239. PMID 15345039 DOI: 10.1186/Gb-2004-5-9-239  0.124
2010 Masonbrink RE, Birchler JA. Sporophytic nondisjunction of the maize B chromosome at high copy numbers. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 37: 79-84. PMID 20171580 DOI: 10.1016/S1673-8527(09)60027-8  0.122
2006 Kato A, Birchler JA. Induction of tetraploid derivatives of maize inbred lines by nitrous oxide gas treatment Journal of Heredity. 97: 39-44. PMID 16394254 DOI: 10.1093/Jhered/Esj007  0.119
2021 Lee YS, Maple R, Dürr J, Dawson A, Tamim S, Del Genio C, Papareddy R, Luo A, Lamb JC, Amantia S, Sylvester AW, Birchler JA, Meyers BC, Nodine MD, Rouster J, et al. A transposon surveillance mechanism that safeguards plant male fertility during stress. Nature Plants. PMID 33398155 DOI: 10.1038/s41477-020-00818-5  0.115
2005 Fernandez HR, Kavi HH, Xie W, Birchler JA. Heterochromatin: On the ADAR radar? Current Biology. 15: R132-R134. PMID 15723784 DOI: 10.1016/J.Cub.2005.02.012  0.114
2014 Zhang B, Dong Q, Su H, Birchler JA, Han F. Histone phosphorylation: its role during cell cycle and centromere identity in plants. Cytogenetic and Genome Research. 143: 144-9. PMID 24713809 DOI: 10.1159/000360435  0.109
2013 Gaeta RT, Birchler JA. Engineered Plant Chromosomes Plant Centromere Biology. 183-192. DOI: 10.1002/9781118525715.ch14  0.106
1997 Birchler JA, Guo M. Marker Systems for the Phenotypic Recognition of Maternally Derived Trisomics in Maize Journal of Heredity. 88: 27-30. DOI: 10.1093/oxfordjournals.jhered.a023051  0.106
1997 Birchler JA, Guo M. Marker systems for the phenotypic recognition of maternally derived trisomics in maize Journal of Heredity. 88: 27-30.  0.106
1994 Birchler JA. Dosage analysis of maize endosperm development. Annual Review of Genetics. 27: 181-204. PMID 8122901 DOI: 10.1146/Annurev.Ge.27.120193.001145  0.103
2015 Graham N, Swyers N, Gaeta R, Zhao C, Cody J, Birchler J. Telomere-mediated Chromosomal Truncation via Agrobacterium tumefaciens or Particle Bombardment to Produce Engineered Minichromosomes in Plants Bio-Protocol. 5. DOI: 10.21769/BIOPROTOC.1595  0.097
2004 Birchler JA, Newton KJ. Discovering the seeds of diversity in plant genomes Genome Biology. 5. PMID 15128442 DOI: 10.1186/Gb-2004-5-5-323  0.097
1999 Birchler JA, Pal-Bhadra M, Bhadra U. Less from more: Cosuppression of transposable elements Nature Genetics. 21: 148-149. PMID 9988259 DOI: 10.1038/5926  0.096
2016 Swyers NC, Cody JP, McCaw ME, Graham ND, Zhao C, Gaeta RT, Birchler JA. Telomere-Mediated Chromosomal Truncation for Generating Engineered Minichromosomes in Maize. Current Protocols in Plant Biology. 1: 488-500. PMID 31725959 DOI: 10.1002/cppb.20031  0.091
2006 Kato A, Albert PS, Vega JM, Birchler JA. Sensitive fluorescence in situ hybridization signal detection in maize using directly labeled probes produced by high concentration DNA polymerase nick translation Biotechnic and Histochemistry. 81: 71-78. PMID 16908431 DOI: 10.1080/10520290600643677  0.087
2010 Birchler JA, Yao H, Chudalayandi S, Vaiman D, Veitia RA. Heterosis. The Plant Cell. 22: 2105-12. PMID 20622146 DOI: 10.1105/tpc.110.076133  0.086
2019 Birchler JA. Genomic Balance Plays Out in Evolution. The Plant Cell. PMID 31048333 DOI: 10.1105/Tpc.19.00329  0.086
2016 Birchler JA, Johnson AF, Veitia RA. Kinetics genetics: Incorporating the concept of genomic balance into an understanding of quantitative traits Plant Science. 245: 128-134. DOI: 10.1016/j.plantsci.2016.02.002  0.084
2013 Birchler JA, Han F. Centromere epigenetics in plants. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 40: 201-4. PMID 23706294 DOI: 10.1016/J.Jgg.2013.03.008  0.079
2013 Douglas RN, Birchler JA. Plant Centromere Epigenetics Plant Centromere Biology. 147-158. DOI: 10.1002/9781118525715.ch11  0.079
2013 Birchler JA. Genetic Rules of Heterosis in Plants Polyploid and Hybrid Genomics. 313-321. DOI: 10.1002/9781118552872.ch19  0.078
2012 Birchler JA. Genetic consequences of polyploidy in plants Polyploidy and Genome Evolution. 2147483647: 21-32. DOI: 10.1007/978-3-642-31442-1_2  0.076
1993 Kellogg EA, Birchler JA. Linking Phylogeny and Genetics: Zea Mays as a Tool for Phylogenetic Studies Systematic Biology. 42: 415-439. DOI: 10.1093/sysbio/42.4.415  0.075
2018 Birchler JA. An overview of rice genetics research in China. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 45: 563-564. PMID 30482272 DOI: 10.1016/J.Jgg.2018.11.002  0.075
2010 Birchler JA. RNA Interference: What is it? Rna Interference: Application to Drug Discovery and Challenges to Pharmaceutical Development. 1-11. DOI: 10.1002/9780470923733.ch1  0.073
2014 Washburn JD, Birchler JA. Polyploids as a "model system" for the study of heterosis. Plant Reproduction. 27: 1-5. PMID 24202960 DOI: 10.1007/S00497-013-0237-4  0.064
1993 Birchler JA, Alfenito MR. Marker Systems for B–A Translocations in Maize Journal of Heredity. 84: 135-138. DOI: 10.1093/Oxfordjournals.Jhered.A111297  0.063
2008 Birchler JA, Kavi HH. Molecular biology. Slicing and dicing for small RNAs. Science (New York, N.Y.). 320: 1023-4. PMID 18467555 DOI: 10.1126/Science.1159018  0.063
2015 Merchant S, Bednarek SY, Birchler JA, Coupland G, Eckardt NA, Genschik P, Greenberg J, Kieber JJ, Kliebenstein DJ, Pogson BJ, Smyth D. The Plant Cell Introduces Breakthrough Reports: A New Forum for Cutting-Edge Plant Research. The Plant Cell. 27: 2667-8. PMID 26486446 DOI: 10.1105/Tpc.15.00862  0.062
1997 Birchler JA. Do These Sequences Make CENs Yet? Genome Research. 7: 1035-1037. PMID 9371737 DOI: 10.1101/Gr.7.11.1035  0.061
2017 Cody JP, Graham ND, Birchler JA. BiBAC Modification and Stable Transfer into Maize (Zea mays) Hi-II Immature Embryos via Agrobacterium- Mediated Transformation Current Protocols in Plant Biology. 2: 350-369. DOI: 10.1002/CPPB.20061  0.06
2015 Birchler JA. Mendel, Mechanism, Models, Marketing, and More. Cell. 163: 9-11. PMID 26406361 DOI: 10.1016/J.Cell.2015.09.008  0.056
2003 Birchler JA, Auger DL, Riddle NC. In search of the molecular basis of heterosis. The Plant Cell. 15: 2236-9. PMID 14523245 DOI: 10.1105/Tpc.151030  0.048
2013 Jiang J, Birchler JA. Plant Centromere Biology Plant Centromere Biology. DOI: 10.1002/9781118525715  0.043
2020 Henkhaus N, Bartlett M, Gang D, Grumet R, Jordon‐Thaden I, Lorence A, Lyons E, Miller S, Murray S, Nelson A, Specht C, Tyler B, Wentworth T, Ackerly D, Baltensperger D, ... ... Birchler J, et al. Plant science decadal vision 2020–2030: Reimagining the potential of plants for a healthy and sustainable future Plant Direct. 4. DOI: 10.1002/pld3.252  0.043
2010 Birchler JA, Pires JC. Advances in plant cytogenetics. Preface. Cytogenetic and Genome Research. 129: 5. PMID 20628247 DOI: 10.1159/000308300  0.034
2013 Hill CE, Lystrup A, Kline K, Gebru NM, Birchler J, Palmer G, Robinson J, Um M, Griffin S, Lipsky E, Knox S, Pinto-Coelho K. Aspiring to become a therapist: Personal strengths and challenges, influences, motivations, and expectations of future psychotherapists Counselling Psychology Quarterly. 26: 267-293. DOI: 10.1080/09515070.2013.825763  0.032
2010 Birchler JA, Krishnaswamy L, Gaeta RT, Masonbrink RE, Zhao C. Engineered minichromosomes in plants Critical Reviews in Plant Sciences. 29: 135-147. DOI: 10.1080/07352681003709918  0.016
2015 Graham ND, Cody JP, Swyers NC, McCaw ME, Zhao C, Birchler JA. Engineered Minichromosomes in Plants: Structure, Function, and Applications International Review of Cell and Molecular Biology. 318: 63-119. DOI: 10.1016/bs.ircmb.2015.05.002  0.016
2015 Birchler JA. Engineered minichromosome technology in plants Recent Advancements in Gene Expression and Enabling Technologies in Crop Plants. 383-389. DOI: 10.1007/978-1-4939-2202-4_13  0.01
2013 Birchler JA. Profile of James A. Birchler. Interview by Farooq Ahmed. Proceedings of the National Academy of Sciences of the United States of America. 110: 2687-9. PMID 23345423 DOI: 10.1073/pnas.1221539110  0.01
2013 Birchler JA, Jeffrey Chen Z. Preface Polyploid and Hybrid Genomics. xvii-xviii. DOI: 10.1002/9781118552872  0.01
2012 Birchler JA. Heterosis-what art thou? Maydica. 57: 92-95.  0.01
2008 Birchler JJ. Reader: Daschle's comments in November article objectionable. Healthcare Financial Management : Journal of the Healthcare Financial Management Association. 62: 24-5. PMID 19097601  0.01
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