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Vineeta Agarwala, Ph.D. - Publications

Affiliations: 
2013 Biophysics Harvard University, Cambridge, MA, United States 
Area:
human genetic variation and its application to disease
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14/32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Sinnott-Armstrong N, Tanigawa Y, Amar D, Mars N, Benner C, Aguirre M, Venkataraman GR, Wainberg M, Ollila HM, Kiiskinen T, Havulinna AS, Pirruccello JP, Qian J, Shcherbina A, ... ... Agarwala V, et al. Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics. PMID 33462484 DOI: 10.1038/s41588-020-00757-z  0.367
2018 Flannick J, Fuchsberger C, Mahajan A, Teslovich TM, Agarwala V, Gaulton KJ, Caulkins L, Koesterer R, Ma C, Moutsianas L, McCarthy DJ, Rivas MA, Perry JRB, Sim X, Blackwell TW, et al. Erratum: Sequence data and association statistics from 12,940 type 2 diabetes cases and controls. Scientific Data. 5: 180002. PMID 29360107 DOI: 10.1038/sdata.2018.2  0.58
2017 Jason F, Fuchsberger C, Mahajan A, Teslovich TM, Agarwala V, Gaulton KJ, Caulkins L, Koesterer R, Ma C, Moutsianas L, McCarthy DJ, Rivas MA, Perry JRB, Sim X, Blackwell TW, et al. Sequence data and association statistics from 12,940 type 2 diabetes cases and controls. Scientific Data. 4: 170179. PMID 29257133 DOI: 10.1038/Sdata.2017.179  0.669
2017 Mercader JM, Liao RG, Davis A, Dymek Z, Estrada K, Tukiainen T, Huerta-Chagoya A, Moreno-Macías H, Jablonski KA, Hanson RL, Walford GA, Moran I, Chen L, Agarwala V, Ordoñez-Sánchez ML, et al. A Loss-Of-Function Splice Acceptor Variant in IGF2 is Protective for Type 2 Diabetes. Diabetes. PMID 28838971 DOI: 10.2337/Db17-0187  0.604
2016 Fuchsberger C, Flannick J, Teslovich TM, Mahajan A, Agarwala V, Gaulton KJ, Ma C, Fontanillas P, Moutsianas L, McCarthy DJ, Rivas MA, Perry JR, Sim X, Blackwell TW, Robertson NR, et al. The genetic architecture of type 2 diabetes. Nature. PMID 27398621 DOI: 10.1038/Nature18642  0.688
2015 Moutsianas L, Agarwala V, Fuchsberger C, Flannick J, Rivas MA, Gaulton KJ, Albers PK, McVean G, Boehnke M, Altshuler D, McCarthy MI. The power of gene-based rare variant methods to detect disease-associated variation and test hypotheses about complex disease. Plos Genetics. 11: e1005165. PMID 25906071 DOI: 10.1371/Journal.Pgen.1005165  0.608
2014 Wang SR, Agarwala V, Flannick J, Chiang CW, Altshuler D, Hirschhorn JN. Simulation of Finnish population history, guided by empirical genetic data, to assess power of rare-variant tests in Finland. American Journal of Human Genetics. 94: 710-20. PMID 24768551 DOI: 10.1016/J.Ajhg.2014.03.019  0.624
2013 Ran FA, Hsu PD, Wright J, Agarwala V, Scott DA, Zhang F. Genome engineering using the CRISPR-Cas9 system. Nature Protocols. 8: 2281-308. PMID 24157548 DOI: 10.1038/Nprot.2013.143  0.349
2013 Agarwala V, Flannick J, Sunyaev S, Altshuler D. Evaluating empirical bounds on complex disease genetic architecture. Nature Genetics. 45: 1418-27. PMID 24141362 DOI: 10.1038/Ng.2804  0.588
2013 Flannick J, Beer NL, Bick AG, Agarwala V, Molnes J, Gupta N, Burtt NP, Florez JC, Meigs JB, Taylor H, Lyssenko V, Irgens H, Fox E, Burslem F, Johansson S, et al. Assessing the phenotypic effects in the general population of rare variants in genes for a dominant Mendelian form of diabetes. Nature Genetics. 45: 1380-5. PMID 24097065 DOI: 10.1038/Ng.2794  0.622
2013 Hsu PD, Scott DA, Weinstein JA, Ran FA, Konermann S, Agarwala V, Li Y, Fine EJ, Wu X, Shalem O, Cradick TJ, Marraffini LA, Bao G, Zhang F. DNA targeting specificity of RNA-guided Cas9 nucleases. Nature Biotechnology. 31: 827-32. PMID 23873081 DOI: 10.1038/Nbt.2647  0.35
2012 Engreitz JM, Agarwala V, Mirny LA. Three-dimensional genome architecture influences partner selection for chromosomal translocations in human disease. Plos One. 7: e44196. PMID 23028501 DOI: 10.1371/Journal.Pone.0044196  0.329
2011 Shea J, Agarwala V, Philippakis AA, Maguire J, Banks E, Depristo M, Thomson B, Guiducci C, Onofrio RC, Kathiresan S, Gabriel S, Burtt NP, Daly MJ, Groop L, Altshuler D, et al. Comparing strategies to fine-map the association of common SNPs at chromosome 9p21 with type 2 diabetes and myocardial infarction. Nature Genetics. 43: 801-5. PMID 21775993 DOI: 10.1038/Ng.871  0.634
2011 Jordan DM, Kiezun A, Baxter SM, Agarwala V, Green RC, Murray MF, Pugh T, Lebo MS, Rehm HL, Funke BH, Sunyaev SR. Development and validation of a computational method for assessment of missense variants in hypertrophic cardiomyopathy. American Journal of Human Genetics. 88: 183-92. PMID 21310275 DOI: 10.1016/J.Ajhg.2011.01.011  0.424
Low-probability matches (unlikely to be authored by this person)
2018 Presley CJ, Tang D, Soulos PR, Chiang AC, Longtine JA, Adelson KB, Herbst RS, Zhu W, Nussbaum NC, Sorg RA, Agarwala V, Abernethy AP, Gross CP. Association of Broad-Based Genomic Sequencing With Survival Among Patients With Advanced Non-Small Cell Lung Cancer in the Community Oncology Setting. Jama. 320: 469-477. PMID 30088010 DOI: 10.1001/jama.2018.9824  0.245
2019 Riaz F, Presley CJ, Chiang AC, Longtine JA, Soulos PR, Adelson KB, Herbst RS, Nussbaum NC, Sorg RA, Abernethy AP, Agarwala V, Gross CP. Disparities in broad-based genomic sequencing for patients with advanced non-small cell lung cancer. Journal of Geriatric Oncology. PMID 30718180 DOI: 10.1016/j.jgo.2019.01.016  0.219
2018 Agarwala V, Khozin S, Singal G, O'Connell C, Kuk D, Li G, Gossai A, Miller V, Abernethy AP. Real-World Evidence In Support Of Precision Medicine: Clinico-Genomic Cancer Data As A Case Study. Health Affairs (Project Hope). 37: 765-772. PMID 29733723 DOI: 10.1377/hlthaff.2017.1579  0.212
2019 Singal G, Miller PG, Agarwala V, Li G, Kaushik G, Backenroth D, Gossai A, Frampton GM, Torres AZ, Lehnert EM, Bourque D, O'Connell C, Bowser B, Caron T, Baydur E, et al. Association of Patient Characteristics and Tumor Genomics With Clinical Outcomes Among Patients With Non-Small Cell Lung Cancer Using a Clinicogenomic Database. Jama. 321: 1391-1399. PMID 30964529 DOI: 10.1001/Jama.2019.3241  0.197
2021 Sinnott-Armstrong N, Tanigawa Y, Amar D, Mars N, Benner C, Aguirre M, Venkataraman GR, Wainberg M, Ollila HM, Kiiskinen T, Havulinna AS, Pirruccello JP, Qian J, Shcherbina A, ... ... Agarwala V, et al. Author Correction: Genetics of 35 blood and urine biomarkers in the UK Biobank. Nature Genetics. PMID 34608296 DOI: 10.1038/s41588-021-00956-2  0.164
2013 Blazeck J, Reed B, Garg R, Gerstner R, Pan A, Agarwala V, Alper HS. Generalizing a hybrid synthetic promoter approach in Yarrowia lipolytica. Applied Microbiology and Biotechnology. 97: 3037-52. PMID 23053080 DOI: 10.1007/s00253-012-4421-5  0.136
1999 Hensel N, Agarwala V, Jiang YZ, Mavroudis D, Molldrem J, Barrett AJ. A technique for dual determination of cytotoxic and helper lymphocyte precursor frequency by a miniaturized dye release method. Bone Marrow Transplantation. 23: 71-8. PMID 10037053 DOI: 10.1038/sj.bmt.1701528  0.086
2015 Najim M, Modi G, Mishra YK, Adelung R, Singh D, Agarwala V. Ultra-wide bandwidth with enhanced microwave absorption of electroless Ni-P coated tetrapod-shaped ZnO nano- and microstructures. Physical Chemistry Chemical Physics : Pccp. 17: 22923-33. PMID 26267361 DOI: 10.1039/c5cp03488d  0.077
1966 Mohan RN, Sharma KN, Agarwala VC. A note on an outbreak of epizootic lymphangitis in equines. The Indian Veterinary Journal. 43: 338-9. PMID 5949471  0.075
2014 Joshi A, Agarwala V, Noronha V, Dhumal S, Juvekar S, Prabhash K. Response to oral metronomic chemotherapy in carcinoma of the Buccal Mucosa: A case report. Indian Journal of Cancer. 51: 400-401. PMID 25494166 DOI: 10.4103/0019-509X.146786  0.044
2003 Clelland NL, Agarwala V, Knobloch LA, Seghi RR. Relative wear of enamel opposing low-fusing dental porcelain. Journal of Prosthodontics : Official Journal of the American College of Prosthodontists. 12: 168-75. PMID 14508738 DOI: 10.1016/S1059-941X(03)00051-2  0.043
1997 Molldrem JJ, Clave E, Jiang YZ, Mavroudis D, Raptis A, Hensel N, Agarwala V, Barrett AJ. Cytotoxic T lymphocytes specific for a nonpolymorphic proteinase 3 peptide preferentially inhibit chronic myeloid leukemia colony-forming units. Blood. 90: 2529-34. PMID 9326217  0.032
1999 van Rhee F, Jiang YZ, Vigue F, Kirby M, Mavroudis D, Hensel NF, Agarwala V, Clave E, Childs R, Raptis A, Sloand E, Carter C, Read EJ, Barrett J. Human G-CSF-mobilized CD34-positive peripheral blood progenitor cells can stimulate allogeneic T-cell responses: implications for graft rejection in mismatched transplantation. British Journal of Haematology. 105: 1014-24. PMID 10554815 DOI: 10.1046/j.1365-2141.1999.01470.x  0.019
2019 Kraut J, Mooney K, Sweetenham JW, Page RD, Adelson K, Agarwala V, Fessele KL, Hamrick HJ, Kaganman I, Martineau J, Abernethy AP, Meropol NJ. Implementing an Electronic End-of-Life Chemotherapy Utilization Measure. Journal of Oncology Practice. JOP1800408. PMID 30883256 DOI: 10.1200/Jop.18.00408  0.01
2015 Noronha V, Joshi A, Patil V, Dhumal S, Agarwala V, Prabhash K. Excellent response to oral Metronomic chemotherapy in unresectable adenocarcinoma of external auditory canal. Indian Journal of Medical and Paediatric Oncology : Official Journal of Indian Society of Medical & Paediatric Oncology. 36: 132. PMID 26157292 DOI: 10.4103/0971-5851.158849  0.01
2008 Saikia KC, Bhattacharya TD, Agarwala V. Anterior compartment pressure measurement in closed fractures of leg. Indian Journal of Orthopaedics. 42: 217-21. PMID 19826531 DOI: 10.4103/0019-5413.40261  0.01
2001 Clelland NL, Agarwala V, Knobloch LA, Seghi RR. Wear of enamel opposing low-fusing and conventional ceramic restorative materials. Journal of Prosthodontics : Official Journal of the American College of Prosthodontists. 10: 8-15. PMID 11406790  0.01
1996 Srivastava RC, Das AK, Upadhyay S, Agarwala V. Mimicking sensing mechanism of smell-oscillations of electrical potential difference across a bipolar liquid membrane induced by olfactory agents. Indian Journal of Biochemistry & Biophysics. 33: 195-8. PMID 8828289  0.01
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