| Year |
Citation |
Score |
| 2023 |
Zuo Z, Billings T, Walker M, Petkov PM, Fordyce PM, Stormo GD. On the dependent recognition of some long zinc finger proteins. Nucleic Acids Research. PMID 36951113 DOI: 10.1093/nar/gkad207 |
0.31 |
|
| 2020 |
Roy B, Granas D, Bragg F, Cher JAY, White MA, Stormo GD. Autoregulation of yeast ribosomal proteins discovered by efficient search for feedback regulation. Communications Biology. 3: 761. PMID 33311538 DOI: 10.1038/s42003-020-01494-z |
0.366 |
|
| 2020 |
Mejía-Almonte C, Busby SJW, Wade JT, van Helden J, Arkin AP, Stormo GD, Eilbeck K, Palsson BO, Galagan JE, Collado-Vides J. Redefining fundamental concepts of transcription initiation in bacteria. Nature Reviews. Genetics. PMID 32665585 DOI: 10.1038/S41576-020-0254-8 |
0.322 |
|
| 2017 |
Hu C, Malik V, Chang YK, Veerapandian V, Srivastava Y, Huang YH, Hou L, Cojocaru V, Stormo GD, Jauch R. Coop-seq analysis demonstrates that Sox2 evokes latent specificities in the DNA recognition by Pax6. Journal of Molecular Biology. PMID 29050852 DOI: 10.1016/J.Jmb.2017.10.013 |
0.372 |
|
| 2017 |
Xiao S, Lu J, Sridhar B, Cao X, Yu P, Zhao T, Chen CC, McDee D, Sloofman L, Wang Y, Rivas-Astroza M, Telugu BP, Levasseur D, Zhang K, Liang H, ... ... Stormo G, et al. SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination. Cell Reports. 18: 3117-3128. PMID 28355564 DOI: 10.1016/J.Celrep.2017.02.070 |
0.329 |
|
| 2016 |
Chang YK, Srivastava Y, Hu C, Joyce A, Yang X, Zuo Z, Havranek JJ, Stormo GD, Jauch R. Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq. Nucleic Acids Research. PMID 27915232 DOI: 10.1093/Nar/Gkw1198 |
0.413 |
|
| 2016 |
Spivak AT, Stormo GD. Combinatorial cis-Regulation in Saccharomyces Species. G3 (Bethesda, Md.). PMID 26772747 DOI: 10.1534/G3.115.024331 |
0.79 |
|
| 2015 |
Zuo Z, Chang Y, Stormo GD. A quantitative understanding of lac repressor's binding specificity and flexibility. Quantitative Biology (Beijing, China). 3: 69-80. PMID 26752632 DOI: 10.1007/s40484-015-0044-z |
0.326 |
|
| 2015 |
Sasse SK, Zuo Z, Kadiyala V, Zhang L, Pufall MA, Jain MK, Phang TL, Stormo GD, Gerber AN. Response Element Composition Governs Correlations Between Binding Site Affinity and Transcription in Glucocorticoid Receptor Feed-forward Loops. The Journal of Biological Chemistry. PMID 26088140 DOI: 10.1074/Jbc.M115.668558 |
0.346 |
|
| 2015 |
Elliott G, Hong C, Xing X, Zhou X, Li D, Coarfa C, Bell RJ, Maire CL, Ligon KL, Sigaroudinia M, Gascard P, Tlsty TD, Harris RA, Schalkwyk LC, Bilenky M, ... ... Stormo GD, et al. Intermediate DNA methylation is a conserved signature of genome regulation. Nature Communications. 6: 6363. PMID 25691127 DOI: 10.1038/Ncomms7363 |
0.323 |
|
| 2014 |
Zuo Z, Stormo GD. High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding. Genetics. 198: 1329-43. PMID 25209146 DOI: 10.1534/genetics.114.170100 |
0.304 |
|
| 2014 |
Visvikis O, Ihuegbu N, Labed SA, Luhachack LG, Alves AM, Wollenberg AC, Stuart LM, Stormo GD, Irazoqui JE. Innate host defense requires TFEB-mediated transcription of cytoprotective and antimicrobial genes. Immunity. 40: 896-909. PMID 24882217 DOI: 10.1016/J.Immuni.2014.05.002 |
0.752 |
|
| 2014 |
Patel RY, Stormo GD. Discriminative motif optimization based on perceptron training. Bioinformatics (Oxford, England). 30: 941-8. PMID 24369152 DOI: 10.1093/bioinformatics/btt748 |
0.317 |
|
| 2013 |
Enuameh MS, Asriyan Y, Richards A, Christensen RG, Hall VL, Kazemian M, Zhu C, Pham H, Cheng Q, Blatti C, Brasefield JA, Basciotta MD, Ou J, McNulty JC, Zhu LJ, ... ... Stormo GD, et al. Global analysis of Drosophila Cysâ‚‚-Hisâ‚‚ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants. Genome Research. 23: 928-40. PMID 23471540 DOI: 10.1101/Gr.151472.112 |
0.382 |
|
| 2012 |
Christensen RG, Enuameh MS, Noyes MB, Brodsky MH, Wolfe SA, Stormo GD. Recognition models to predict DNA-binding specificities of homeodomain proteins. Bioinformatics (Oxford, England). 28: i84-9. PMID 22689783 DOI: 10.1093/bioinformatics/bts202 |
0.309 |
|
| 2012 |
Gupta A, Christensen RG, Rayla AL, Lakshmanan A, Stormo GD, Wolfe SA. An optimized two-finger archive for ZFN-mediated gene targeting. Nature Methods. 9: 588-90. PMID 22543349 DOI: 10.1038/nmeth.1994 |
0.307 |
|
| 2012 |
Zhao G, Ihuegbu N, Lee M, Schriefer L, Wang T, Stormo GD. Conserved Motifs and Prediction of Regulatory Modules in Caenorhabditis elegans. G3 (Bethesda, Md.). 2: 469-81. PMID 22540038 DOI: 10.1534/G3.111.001081 |
0.796 |
|
| 2012 |
Zhao Y, Ruan S, Pandey M, Stormo GD. Improved models for transcription factor binding site identification using nonindependent interactions. Genetics. 191: 781-90. PMID 22505627 DOI: 10.1534/genetics.112.138685 |
0.302 |
|
| 2012 |
Ihuegbu NE, Stormo GD, Buhler J. Fast, sensitive discovery of conserved genome-wide motifs. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 139-47. PMID 22300316 DOI: 10.1089/Cmb.2011.0249 |
0.789 |
|
| 2012 |
Spivak AT, Stormo GD. ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species. Nucleic Acids Research. 40: D162-8. PMID 22140105 DOI: 10.1093/Nar/Gkr1180 |
0.793 |
|
| 2011 |
Motlhabi LM, Stormo GD. Assessing the effects of symmetry on motif discovery and modeling. Plos One. 6: e24908. PMID 21949783 DOI: 10.1371/journal.pone.0024908 |
0.32 |
|
| 2011 |
Stormo GD. Maximally efficient modeling of DNA sequence motifs at all levels of complexity. Genetics. 187: 1219-24. PMID 21300846 DOI: 10.1534/genetics.110.126052 |
0.305 |
|
| 2011 |
Grimm AA, Brace CS, Wang T, Stormo GD, Imai S. A nutrient-sensitive interaction between Sirt1 and HNF-1α regulates Crp expression. Aging Cell. 10: 305-17. PMID 21176092 DOI: 10.1111/J.1474-9726.2010.00667.X |
0.416 |
|
| 2010 |
Stormo GD, Zhao Y. Determining the specificity of protein-DNA interactions. Nature Reviews. Genetics. 11: 751-60. PMID 20877328 DOI: 10.1038/nrg2845 |
0.378 |
|
| 2010 |
Sahota G, Stormo GD. Novel sequence-based method for identifying transcription factor binding sites in prokaryotic genomes. Bioinformatics (Oxford, England). 26: 2672-7. PMID 20807838 DOI: 10.1093/Bioinformatics/Btq501 |
0.776 |
|
| 2009 |
Homsi DS, Gupta V, Stormo GD. Modeling the quantitative specificity of DNA-binding proteins from example binding sites. Plos One. 4: e6736. PMID 19707584 DOI: 10.1371/journal.pone.0006736 |
0.33 |
|
| 2009 |
Schraml BU, Hildner K, Ise W, Lee WL, Smith WA, Solomon B, Sahota G, Sim J, Mukasa R, Cemerski S, Hatton RD, Stormo GD, Weaver CT, Russell JH, Murphy TL, et al. The AP-1 transcription factor Batf controls T(H)17 differentiation. Nature. 460: 405-9. PMID 19578362 DOI: 10.1038/Nature08114 |
0.708 |
|
| 2009 |
Kwan AL, Li L, Kulp DC, Dutcher SK, Stormo GD. Improving gene-finding in Chlamydomonas reinhardtii:GreenGenie2. Bmc Genomics. 10: 210. PMID 19422688 DOI: 10.1186/1471-2164-10-210 |
0.307 |
|
| 2009 |
Foat BC, Stormo GD. Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs. Molecular Systems Biology. 5: 268. PMID 19401680 DOI: 10.1038/Msb.2009.24 |
0.405 |
|
| 2009 |
Xu X, Ji Y, Stormo GD. Discovering cis-regulatory RNAs in Shewanella genomes by Support Vector Machines. Plos Computational Biology. 5: e1000338. PMID 19343219 DOI: 10.1371/Journal.Pcbi.1000338 |
0.672 |
|
| 2008 |
Liu J, Xu X, Stormo GD. The cis-regulatory map of Shewanella genomes. Nucleic Acids Research. 36: 5376-90. PMID 18701645 DOI: 10.1093/Nar/Gkn515 |
0.514 |
|
| 2008 |
Noyes MB, Christensen RG, Wakabayashi A, Stormo GD, Brodsky MH, Wolfe SA. Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. Cell. 133: 1277-89. PMID 18585360 DOI: 10.1016/j.cell.2008.05.023 |
0.319 |
|
| 2008 |
Chang LW, Payton JE, Yuan W, Ley TJ, Nagarajan R, Stormo GD. Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia. Genome Biology. 9: R38. PMID 18291030 DOI: 10.1186/Gb-2008-9-2-R38 |
0.662 |
|
| 2008 |
Zeng J, Yan J, Wang T, Mosbrook-Davis D, Dolan KT, Christensen R, Stormo GD, Haussler D, Lathrop RH, Brachmann RK, Burgess SM. Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Research. 36: e8. PMID 18086703 DOI: 10.1093/Nar/Gkm1117 |
0.623 |
|
| 2007 |
Davies SR, Chang LW, Patra D, Xing X, Posey K, Hecht J, Stormo GD, Sandell LJ. Computational identification and functional validation of regulatory motifs in cartilage-expressed genes. Genome Research. 17: 1438-47. PMID 17785538 DOI: 10.1101/gr.6224007 |
0.721 |
|
| 2007 |
Stormo GD, Zhao Y. Putting numbers on the network connections. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 29: 717-21. PMID 17620328 DOI: 10.1002/bies.20617 |
0.329 |
|
| 2007 |
Rochat RH, de las Fuentes L, Stormo G, Davila-Roman VG, Gu CC. A novel method combining linkage disequilibrium information and imputed functional knowledge for tagSNP selection. Human Heredity. 64: 243-9. PMID 17587853 DOI: 10.1159/000104227 |
0.305 |
|
| 2007 |
Xu X, Ji Y, Stormo GD. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment. Bioinformatics (Oxford, England). 23: 1883-91. PMID 17537756 DOI: 10.1093/Bioinformatics/Btm272 |
0.659 |
|
| 2007 |
Chang LW, Fontaine BR, Stormo GD, Nagarajan R. PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis. Nucleic Acids Research. 35: W238-44. PMID 17517777 DOI: 10.1093/Nar/Gkm308 |
0.708 |
|
| 2007 |
Zhao G, Schriefer LA, Stormo GD. Identification of muscle-specific regulatory modules in Caenorhabditis elegans. Genome Research. 17: 348-57. PMID 17284674 DOI: 10.1101/Gr.5989907 |
0.342 |
|
| 2006 |
Agrawal R, Stormo GD. Using mRNAs lengths to accurately predict the alternatively spliced gene products in Caenorhabditis elegans. Bioinformatics (Oxford, England). 22: 1239-44. PMID 16595562 DOI: 10.1093/Bioinformatics/Btl076 |
0.563 |
|
| 2006 |
MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. Bmc Bioinformatics. 7: 113. PMID 16522208 DOI: 10.1186/1471-2105-7-113 |
0.428 |
|
| 2006 |
Chang LW, Nagarajan R, Magee JA, Milbrandt J, Stormo GD. A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles. Genome Research. 16: 405-13. PMID 16449500 DOI: 10.1101/Gr.4303406 |
0.724 |
|
| 2006 |
Ong CT, Cheng HT, Chang LW, Ohtsuka T, Kageyama R, Stormo GD, Kopan R. Target selectivity of vertebrate notch proteins. Collaboration between discrete domains and CSL-binding site architecture determines activation probability. The Journal of Biological Chemistry. 281: 5106-19. PMID 16365048 DOI: 10.1074/Jbc.M506108200 |
0.686 |
|
| 2006 |
Magee JA, Chang LW, Stormo GD, Milbrandt J. Direct, androgen receptor-mediated regulation of the FKBP5 gene via a distal enhancer element. Endocrinology. 147: 590-8. PMID 16210365 DOI: 10.1210/En.2005-1001 |
0.646 |
|
| 2005 |
Wang T, Stormo GD. Identifying the conserved network of cis-regulatory sites of a eukaryotic genome. Proceedings of the National Academy of Sciences of the United States of America. 102: 17400-5. PMID 16301543 DOI: 10.1073/pnas.0505147102 |
0.475 |
|
| 2005 |
Liu J, Stormo GD. Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions. Nucleic Acids Research. 33: e141. PMID 16186128 DOI: 10.1093/nar/gni139 |
0.307 |
|
| 2005 |
Workman CT, Yin Y, Corcoran DL, Ideker T, Stormo GD, Benos PV. enoLOGOS: a versatile web tool for energy normalized sequence logos. Nucleic Acids Research. 33: W389-92. PMID 15980495 DOI: 10.1093/Nar/Gki439 |
0.508 |
|
| 2005 |
Gershenzon NI, Stormo GD, Ioshikhes IP. Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites. Nucleic Acids Research. 33: 2290-301. PMID 15849315 DOI: 10.1093/nar/gki519 |
0.305 |
|
| 2005 |
Agrawal R, Stormo GD. Editing efficiency of a Drosophila gene correlates with a distant splice site selection. Rna (New York, N.Y.). 11: 563-6. PMID 15840811 DOI: 10.1261/Rna.7280605 |
0.544 |
|
| 2005 |
Havgaard JH, Lyngsø RB, Stormo GD, Gorodkin J. Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%. Bioinformatics (Oxford, England). 21: 1815-24. PMID 15657094 DOI: 10.1093/bioinformatics/bti279 |
0.331 |
|
| 2005 |
Tan K, McCue LA, Stormo GD. Making connections between novel transcription factors and their DNA motifs. Genome Research. 15: 312-20. PMID 15653829 DOI: 10.1101/Gr.3069205 |
0.524 |
|
| 2005 |
Freimuth RR, Stormo GD, McLeod HL. PolyMAPr: programs for polymorphism database mining, annotation, and functional analysis. Human Mutation. 25: 110-7. PMID 15643605 DOI: 10.1002/Humu.20123 |
0.317 |
|
| 2005 |
Li JB, Zhang M, Dutcher SK, Stormo GD. Procom: a web-based tool to compare multiple eukaryotic proteomes. Bioinformatics (Oxford, England). 21: 1693-4. PMID 15564299 DOI: 10.1093/Bioinformatics/Bti161 |
0.443 |
|
| 2005 |
McDunn JE, Polpitiya A, Stormo G, Ghosh B, Perren Cobb J. A translational approach to modeling pneumonia dynamics Journal of the American College of Surgeons. 201: S40. DOI: 10.1016/J.Jamcollsurg.2005.06.079 |
0.345 |
|
| 2004 |
Zhao T, Chang LW, McLeod HL, Stormo GD. PromoLign: a database for upstream region analysis and SNPs. Human Mutation. 23: 534-9. PMID 15146456 DOI: 10.1002/Humu.20049 |
0.716 |
|
| 2004 |
Akopyants NS, Matlib RS, Bukanova EN, Smeds MR, Brownstein BH, Stormo GD, Beverley SM. Expression profiling using random genomic DNA microarrays identifies differentially expressed genes associated with three major developmental stages of the protozoan parasite Leishmania major. Molecular and Biochemical Parasitology. 136: 71-86. PMID 15138069 DOI: 10.1016/J.Molbiopara.2004.03.002 |
0.318 |
|
| 2004 |
Li JB, Gerdes JM, Haycraft CJ, Fan Y, Teslovich TM, May-Simera H, Li H, Blacque OE, Li L, Leitch CC, Lewis RA, Green JS, Parfrey PS, Leroux MR, Davidson WS, ... ... Stormo GD, et al. Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene. Cell. 117: 541-52. PMID 15137946 DOI: 10.1016/S0092-8674(04)00450-7 |
0.332 |
|
| 2004 |
Hu Y, Wang T, Stormo GD, Gordon JI. RNA interference of achaete-scute homolog 1 in mouse prostate neuroendocrine cells reveals its gene targets and DNA binding sites. Proceedings of the National Academy of Sciences of the United States of America. 101: 5559-64. PMID 15060276 DOI: 10.1073/pnas.0306988101 |
0.357 |
|
| 2004 |
Ji Y, Xu X, Stormo GD. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. Bioinformatics (Oxford, England). 20: 1591-602. PMID 14962926 DOI: 10.1093/Bioinformatics/Bth131 |
0.678 |
|
| 2003 |
Wang T, Stormo GD. Combining phylogenetic data with co-regulated genes to identify regulatory motifs. Bioinformatics (Oxford, England). 19: 2369-80. PMID 14668220 DOI: 10.1093/bioinformatics/btg329 |
0.456 |
|
| 2003 |
Liu J, Tan K, Stormo GD. Computational identification of the Spo0A-phosphate regulon that is essential for the cellular differentiation and development in Gram-positive spore-forming bacteria. Nucleic Acids Research. 31: 6891-903. PMID 14627822 DOI: 10.1093/Nar/Gkg879 |
0.565 |
|
| 2003 |
Li JB, Lin S, Jia H, Wu H, Roe BA, Kulp D, Stormo GD, Dutcher SK. Analysis of Chlamydomonas reinhardtii genome structure using large-scale sequencing of regions on linkage groups I and III. The Journal of Eukaryotic Microbiology. 50: 145-55. PMID 12836870 DOI: 10.1111/J.1550-7408.2003.Tb00109.X |
0.429 |
|
| 2003 |
Chung TP, Laramie JM, Qiu Y, Brownstein B, Stormo G, Cobb JP. SEPSIS GENE EXPRESSION PROFILING IV: CIRCULATING BLOOD TRANSCRIPTION PROFILES PREDICT PHENOTYPES IN MICE WITH ABDOMINAL SEPSIS OR INFLAMMATION Shock. 19: 33-34. DOI: 10.1097/00024382-200306001-00098 |
0.356 |
|
| 2002 |
Gu CC, Rao DC, Stormo G, Hicks C, Province MA. Role of gene expression microarray analysis in finding complex disease genes. Genetic Epidemiology. 23: 37-56. PMID 12112247 DOI: 10.1002/Gepi.220 |
0.34 |
|
| 2002 |
GuhaThakurta D, Palomar L, Stormo GD, Tedesco P, Johnson TE, Walker DW, Lithgow G, Kim S, Link CD. Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods. Genome Research. 12: 701-12. PMID 11997337 DOI: 10.1101/gr.228902 |
0.389 |
|
| 2002 |
Stormo GD, Tan K. Mining genome databases to identify and understand new gene regulatory systems. Current Opinion in Microbiology. 5: 149-53. PMID 11934610 DOI: 10.1016/S1369-5274(02)00309-0 |
0.517 |
|
| 2002 |
Guhathakurta D, Schriefer LA, Hresko MC, Waterston RH, Stormo GD. Identifying muscle regulatory elements and genes in the nematode Caenorhabditis elegans. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 425-436. PMID 11928496 |
0.304 |
|
| 2002 |
Beverley SM, Akopyants NS, Goyard S, Matlib RS, Gordon JL, Brownstein BH, Stormo GD, Bukanova EN, Hott CT, Li F, MacMillan S, Muo JN, Schwertman LA, Smeds MR, Wang Y. Putting the Leishmania genome to work: functional genomics by transposon trapping and expression profiling. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 357: 47-53. PMID 11839181 DOI: 10.1098/Rstb.2001.1048 |
0.364 |
|
| 2001 |
Stormo GD, Ji Y. Do mRNAs act as direct sensors of small molecules to control their expression? Proceedings of the National Academy of Sciences of the United States of America. 98: 9465-7. PMID 11504932 DOI: 10.1073/Pnas.181334498 |
0.59 |
|
| 2001 |
GuhaThakurta D, Stormo GD. Identifying target sites for cooperatively binding factors. Bioinformatics (Oxford, England). 17: 608-21. PMID 11448879 |
0.371 |
|
| 2001 |
Gorodkin J, Stricklin SL, Stormo GD. Discovering common stem-loop motifs in unaligned RNA sequences Nucleic Acids Research. 29: 2135-2144. PMID 11353083 |
0.371 |
|
| 2001 |
Tan K, Moreno-Hagelsieb G, Collado-Vides J, Stormo GD. A comparative genomics approach to prediction of new members of regulons Genome Research. 11: 566-584. PMID 11282972 DOI: 10.1101/Gr.149301 |
0.584 |
|
| 2001 |
Cobb JP, Brownstein BH, Watson MA, Shannon WD, Laramie JM, Qiu Y, Stormo GD, Morrissey JJ, Buchman TG, Karl IE, Hotchkiss RS. Injury in the era of genomics. Shock (Augusta, Ga.). 15: 165-70. PMID 11236897 DOI: 10.1097/00024382-200115030-00001 |
0.303 |
|
| 2000 |
Stormo GD. DNA binding sites: Representation and discovery Bioinformatics. 16: 16-23. PMID 10812473 |
0.312 |
|
| 1999 |
Weaver DC, Workman CT, Stormo GD. Modeling regulatory networks with weight matrices Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 112-123. PMID 10380190 |
0.321 |
|
| 1995 |
Snyder EE, Stormo GD. Identification of protein coding regions in genomic DNA Journal of Molecular Biology. 248: 1-18. PMID 7731036 DOI: 10.1006/jmbi.1995.0198 |
0.338 |
|
| 1995 |
Cui Y, Wang Q, Stormo GD, Calvo JM. A consensus sequence for binding of Lrp to DNA Journal of Bacteriology. 177: 4872-4880. PMID 7665463 DOI: 10.1128/Jb.177.17.4872-4880.1995 |
0.318 |
|
| 1995 |
Chen P, Ailion M, Bobik T, Stormo G, Roth J. Five promoters integrate control of the cob/pdu regulon in Salmonella typhimurium Journal of Bacteriology. 177: 5401-5410. PMID 7559322 DOI: 10.1128/Jb.177.19.5401-5410.1995 |
0.377 |
|
| 1994 |
Barrick D, Villanueba K, Childs J, Kalil R, Schneider TD, Lawrence CE, Gold L, Stormo GD. Quantitative analysis of ribosome binding sites in E.coli. Nucleic Acids Research. 22: 1287-95. PMID 8165145 DOI: 10.1093/Nar/22.7.1287 |
0.596 |
|
| 1992 |
Mount SM, Burks C, Hertz G, Stormo GD, White O, Fields C. Splicing signals in Drosophila: intron size, information content, and consensus sequences. Nucleic Acids Research. 20: 4255-62. PMID 1508718 DOI: 10.1093/nar/20.16.4255 |
0.306 |
|
| 1992 |
Gutell RR, Power A, Hertz GZ, Putz EJ, Stormo GD. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Research. 20: 5785-95. PMID 1454539 DOI: 10.1093/Nar/20.21.5785 |
0.359 |
|
| 1992 |
Ringquist S, Shinedling S, Barrick D, Green L, Binkley J, Stormo GD, Gold L. Translation initiation in Escherichia coli: Sequences within the ribosome-binding site Molecular Microbiology. 6: 1219-1229. PMID 1375310 DOI: 10.1111/J.1365-2958.1992.Tb01561.X |
0.569 |
|
| 1990 |
Gold L, Stormo GD. High-level translation initiation Methods in Enzymology. 185: 89-93. PMID 2199797 DOI: 10.1016/0076-6879(90)85009-D |
0.472 |
|
| 1990 |
Hertz GZ, Hartzell GW, Stormo GD. Identification of consensus patterns in unaligned DNA sequences known to be functionally related. Computer Applications in the Biosciences : Cabios. 6: 81-92. PMID 2193692 DOI: 10.1093/bioinformatics/6.2.81 |
0.312 |
|
| 1989 |
Stormo GD, Hartzell GW. Identifying protein-binding sites from unaligned DNA fragments. Proceedings of the National Academy of Sciences of the United States of America. 86: 1183-7. PMID 2919167 |
0.316 |
|
| 1989 |
Schneider TD, Stormo GD. Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique. Nucleic Acids Research. 17: 659-74. PMID 2915926 DOI: 10.1093/nar/17.2.659 |
0.317 |
|
| 1988 |
McPheeters DS, Stormo GD, Gold L. Autogenous regulatory site on the bacteriophage T4 gene 32 messenger RNA Journal of Molecular Biology. 201: 517-535. PMID 3262167 DOI: 10.1016/0022-2836(88)90634-1 |
0.631 |
|
| 1988 |
Tuerk C, Gauss P, Thermes C, Groebe DR, Gayle M, Guild N, Stormo G, d'Aubenton-Carafa Y, Uhlenbeck OC, Tinoco I. CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes Proceedings of the National Academy of Sciences of the United States of America. 85: 1364-1368. PMID 2449689 DOI: 10.1073/Pnas.85.5.1364 |
0.367 |
|
| 1987 |
Romaniuk PJ, Lowary P, Wu HN, Stormo G, Uhlenbeck OC. RNA binding site of R17 coat protein. Biochemistry. 26: 1563-8. PMID 3297131 DOI: 10.1021/Bi00380A011 |
0.374 |
|
| 1986 |
Mcpheeters DS, Christensen A, Young ET, Stormo G, Gold L. Translationsl regulation of expression of the bacteriophage T4 lysozyme gene Nucleic Acids Research. 14: 5813-5826. PMID 3526285 DOI: 10.1093/Nar/14.14.5813 |
0.643 |
|
| 1986 |
Schneider TD, Stormo GD, Gold L, Ehrenfeucht A. Information content of binding sites on nucleotide sequences. Journal of Molecular Biology. 188: 415-31. PMID 3525846 DOI: 10.1016/0022-2836(86)90165-8 |
0.596 |
|
| 1986 |
Stormo GD, Schneider TD, Gold L. Quantitative analysis of the relationship between nucleotide sequence and functional activity. Nucleic Acids Research. 14: 6661-79. PMID 3092188 DOI: 10.1093/Nar/14.16.6661 |
0.557 |
|
| 1984 |
Schneider TD, Stormo GD, Yarus MA, Gold L. Delila system tools. Nucleic Acids Research. 12: 129-40. PMID 6694897 DOI: 10.1093/Nar/12.1Part1.129 |
0.521 |
|
| 1984 |
Trojanowska M, Miller ES, Karam J, Stormo G, Gold L. The bacteriophage T4 regA gene: Primary sequence of a translational repressor Nucleic Acids Research. 12: 5979-5993. PMID 6473098 DOI: 10.1093/Nar/12.15.5979 |
0.637 |
|
| 1984 |
Gold L, Stormo G, Saunders R. Escherichia coli translational initiation factor IF3: A unique case of translational regulation Proceedings of the National Academy of Sciences of the United States of America. 81: 7061-7065. PMID 6390429 DOI: 10.1073/Pnas.81.22.7061 |
0.624 |
|
| 1982 |
Schneider TD, Stormo GD, Haemer JS, Gold L. A design for computer nucleic-acid-sequence storage, retrieval, and manipulation. Nucleic Acids Research. 10: 3013-24. PMID 7099972 DOI: 10.1093/Nar/10.9.3013 |
0.5 |
|
| 1982 |
Stormo GD, Schneider TD, Gold L, Ehrenfeucht A. Use of the 'Perceptron' algorithm to distinguish translational initiation sites in E. coli. Nucleic Acids Research. 10: 2997-3011. PMID 7048259 DOI: 10.1093/Nar/10.9.2997 |
0.584 |
|
| 1982 |
Stormo GD, Schneider TD, Gold LM. Characterization of translational initiation sites in E. coli. Nucleic Acids Research. 10: 2971-96. PMID 7048258 DOI: 10.1093/nar/10.9.2971 |
0.618 |
|
| 1982 |
von Hippel PH, Kowalczykowski SC, Lonberg N, Newport JW, Paul LS, Stormo GD, Gold L. Autoregulation of gene expression. Quantitative evaluation of the expression and function of the bacteriophage T4 gene 32 (single-stranded DNA binding) protein system. Journal of Molecular Biology. 162: 795-818. PMID 6984860 DOI: 10.1016/0022-2836(82)90548-4 |
0.618 |
|
| 1981 |
Gold L, Pribnow D, Schneider T, Shinedling S, Singer BS, Stormo G. Translational initiation in prokaryotes Annual Review of Microbiology. 35: 365-403. PMID 6170248 DOI: 10.1146/Annurev.Mi.35.100181.002053 |
0.631 |
|
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