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Nancy L. Greenbaum - Publications

Affiliations: 
Chemistry City University of New York, New York, NY, United States 
Area:
Biochemistry, Biomechanics Biophysics
Website:
http://www.hunter.cuny.edu/chemistry/faculty/Greenbaum/Nancy
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Ciavarella J, Perea W, Greenbaum NL. Topology of the U12-U6 snRNA Complex of the Minor Spliceosome and Binding by NTC-Related Protein RBM22. Acs Omega. 5: 23549-23558. PMID 32984674 DOI: 10.1021/acsomega.0c01674  0.393
2020 Perea W, Greenbaum NL. Label-free horizontal EMSA for analysis of protein-RNA interactions. Analytical Biochemistry. 599: 113736. PMID 32304696 DOI: 10.1016/J.Ab.2020.113736  0.371
2020 Chu H, Perea W, Greenbaum NL. Role of the central junction in folding topology of the protein-free human U2-U6 snRNA complex. Rna (New York, N.Y.). PMID 32220895 DOI: 10.1261/Rna.073379.119  0.491
2017 Gonzales J, Bhupathiraju NV, Perea W, Chu H, Berisha N, Bueno V, Dodic N, Rozenberg J, Greenbaum NL, Drain CM. Facile synthesis of chlorin bioconjugates by a series of click reactions. Chemical Communications (Cambridge, England). PMID 28304032 DOI: 10.1039/C7Cc01265A  0.55
2016 Riskowski RA, Armstrong RE, Greenbaum NL, Strouse GF. Triangulating Nucleic Acid Conformations Using Multicolor Surface Energy Transfer (McSET). Acs Nano. PMID 26795549 DOI: 10.1021/Acsnano.5B05764  0.325
2016 Perea W, Schroeder KT, Bryant AN, Greenbaum NL. Interaction between the Spliceosomal Pre-mRNA Branch Site and U2 snRNP Protein p14. Biochemistry. 55: 629-32. PMID 26784522 DOI: 10.1021/Acs.Biochem.5B01036  0.771
2014 Zhao C, Anklin C, Greenbaum NL. Use of ¹⁹F NMR methods to probe conformational heterogeneity and dynamics of exchange in functional RNA molecules. Methods in Enzymology. 549: 267-85. PMID 25432753 DOI: 10.1016/B978-0-12-801122-5.00012-X  0.695
2014 Zhao C, Devany M, Greenbaum NL. Measurement of chemical exchange between RNA conformers by 19F NMR. Biochemical and Biophysical Research Communications. 453: 692-5. PMID 25301553 DOI: 10.1016/J.Bbrc.2014.09.075  0.66
2014 Popovic M, Greenbaum NL. Role of helical constraints of the EBS1-IBS1 duplex of a group II intron on demarcation of the 5' splice site. Rna (New York, N.Y.). 20: 24-35. PMID 24243113 DOI: 10.1261/Rna.039701.113  0.758
2013 Zhao C, Bachu R, Popovic M, Devany M, Brenowitz M, Schlatterer JC, Greenbaum NL. Conformational heterogeneity of the protein-free human spliceosomal U2-U6 snRNA complex. Rna (New York, N.Y.). 19: 561-73. PMID 23426875 DOI: 10.1261/Rna.038265.113  0.705
2013 Ahmed SA, Mneimneh S, Greenbaum NL. A combinatorial approach for multiple RNA interaction: Formulations, approximations, and heuristics Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7936: 421-433. DOI: 10.1007/978-3-642-38768-5_38  0.335
2013 Mneimneh S, Ahmed SA, Greenbaum NL. Multiple RNA interaction formulations, approximations, and heuristics Bioinformatics 2013 - Proceedings of the International Conference On Bioinformatics Models, Methods and Algorithms. 242-249.  0.337
2012 Popovi? M, Nelson JD, Schroeder KT, Greenbaum NL. Impact of base pair identity 5' to the spliceosomal branch site adenosine on branch site conformation. Rna (New York, N.Y.). 18: 2093-103. PMID 23002123 DOI: 10.1261/Rna.035782.112  0.751
2010 Yuan F, Greenbaum NL. Use of RNA-bound Tb3+ as a FRET donor. Methods (San Diego, Calif.). 52: 173-9. PMID 20713158 DOI: 10.1016/J.Ymeth.2010.08.008  0.445
2008 Schlatterer JC, Greenbaum NL. Specificity of Mg2+ binding at the Group II intron branch site. Biophysical Chemistry. 136: 96-100. PMID 18555583 DOI: 10.1016/J.Bpc.2008.05.004  0.447
2007 Xu D, Landon T, Greenbaum NL, Fenley MO. The electrostatic characteristics of G.U wobble base pairs. Nucleic Acids Research. 35: 3836-47. PMID 17526525 DOI: 10.1093/Nar/Gkm274  0.456
2007 Yuan F, Griffin L, Phelps L, Buschmann V, Weston K, Greenbaum NL. Use of a novel Förster resonance energy transfer method to identify locations of site-bound metal ions in the U2-U6 snRNA complex. Nucleic Acids Research. 35: 2833-45. PMID 17430967 DOI: 10.1093/Nar/Gkm134  0.424
2006 Jennings TL, Schlatterer JC, Singh MP, Greenbaum NL, Strouse GF. NSET molecular beacon analysis of hammerhead RNA substrate binding and catalysis. Nano Letters. 6: 1318-24. PMID 16834403 DOI: 10.1021/Nl052458A  0.363
2006 Schlatterer JC, Crayton SH, Greenbaum NL. Conformation of the Group II intron branch site in solution. Journal of the American Chemical Society. 128: 3866-7. PMID 16551067 DOI: 10.1021/Ja0578754  0.477
2006 Jennings TL, Schlatterer JC, Singh MP, Greenbaum NL, Strouse GF. NSET molecular beacon analysis of hammerhead RNA substrate binding and catalysis Nano Letters. 6: 1318-1324. DOI: 10.1021/nl052458a  0.346
2005 Schroeder KT, Skalicky JJ, Greenbaum NL. NMR spectroscopy of RNA duplexes containing pseudouridine in supercooled water. Rna (New York, N.Y.). 11: 1012-6. PMID 15987812 DOI: 10.1261/Rna.2270205  0.77
2005 Xu D, Greenbaum NL, Fenley MO. Recognition of the spliceosomal branch site RNA helix on the basis of surface and electrostatic features. Nucleic Acids Research. 33: 1154-61. PMID 15728744 DOI: 10.1093/Nar/Gki249  0.503
2005 Newby M, Greenbaum N. Sculpting of the Eukaryotic Branch Site Recognition Motif by a Conserved Pseudouridine Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5394  0.388
2004 Xiong Y, Schroeder K, Greenbaum NL, Hendrickson CL, Marshall AG. Improved mass analysis of oligoribonucleotides by 13C, 15N double depletion and electrospray ionization FT-ICR mass spectrometry. Analytical Chemistry. 76: 1804-9. PMID 15018587 DOI: 10.1021/Ac030299E  0.714
2003 Mundoma C, Greenbaum NL. Binding of europium(III) ions to RNA stem loops: role of the primary hydration sphere in complex formation. Biopolymers. 69: 100-9. PMID 12717725 DOI: 10.1002/Bip.10320  0.463
2003 Newby M, Greenbaum N. Chemical Shift Assignments for the Unmodified Branch Site Helix Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5395  0.408
2002 Newby MI, Greenbaum NL. Sculpting of the spliceosomal branch site recognition motif by a conserved pseudouridine. Nature Structural Biology. 9: 958-65. PMID 12426583 DOI: 10.1038/Nsb873  0.524
2002 Newby MI, Greenbaum NL. Investigation of Overhauser effects between pseudouridine and water protons in RNA helices. Proceedings of the National Academy of Sciences of the United States of America. 99: 12697-702. PMID 12242344 DOI: 10.1073/Pnas.202477199  0.536
2002 Mundoma C, Greenbaum NL. Sequestering of Eu(III) by a GAAA RNA tetraloop. Journal of the American Chemical Society. 124: 3525-32. PMID 11929239 DOI: 10.1021/Ja012268B  0.48
2001 Newby MI, Greenbaum NL. A conserved pseudouridine modification in eukaryotic U2 snRNA induces a change in branch-site architecture Rna. 7: 833-845. PMID 11424937 DOI: 10.1017/S1355838201002308  0.595
2001 Epperson JD, Dodge J, Rill RL, Greenbaum NL. Analysis of oligonucleotides and unincorporated nucleotides from in vitro transcription by capillary electrophoresis in Pluronic F127 gels Electrophoresis. 22: 771-778. PMID 11296933 DOI: 10.1002/1522-2683(200102)22:4<771::Aid-Elps771>3.0.Co;2-#  0.39
2001 Greenbaum NL, Mundoma C, Peterman DR. Probing of metal-binding domains of RNA hairpin loops by laser-induced lanthanide(III) luminescence Biochemistry. 40: 1124-1134. PMID 11170437 DOI: 10.1021/Bi002210U  0.472
1996 Greenbaum NL, Radhakrishnan I, Patel DJ, Hirsh D. Solution structure of the donor site of a trans-splicing RNA. Structure (London, England : 1993). 4: 725-33. PMID 8805553 DOI: 10.1016/S0969-2126(96)00078-0  0.728
1996 Greenbaum NL. How Tat targets TAR: Structure of the BIV peptide-RNA complex Structure. 4: 5-9. PMID 8805518  0.314
1995 Greenbaum NL, Radhakrishnan I, Hirsh D, Patel DJ. Determination of the folding topology of the SL1 RNA from Caenorhabditis elegans by multidimensional heteronuclear NMR. Journal of Molecular Biology. 252: 314-27. PMID 7563053 DOI: 10.1006/Jmbi.1995.0499  0.757
1991 Greenbaum NL, Wilson DF. Role of intramitochondrial pH in the energetics and regulation of mitochondrial oxidative phosphorylation Bba - Bioenergetics. 1058: 113-120. PMID 1646629 DOI: 10.1016/S0005-2728(05)80227-0  0.315
1991 Greenbaum NL, Mauzerall D. Effect of irradiance level on distribution of chlorophylls between PS II and PS I as determined from optical cross-sections Bba - Bioenergetics. 1057: 195-207. DOI: 10.1016/S0005-2728(05)80102-1  0.479
1989 Mauzerall D, Greenbaum NL. The absolute size of a photosynthetic unit Bba - Bioenergetics. 974: 119-140. DOI: 10.1016/S0005-2728(89)80365-2  0.476
1987 Greenbaum NL, Ley AC, Mauzerall DC. Use of a light-induced respiratory transient to measure the optical cross section of photosystem I in chlorella. Plant Physiology. 84: 879-82. PMID 16665537 DOI: 10.1104/Pp.84.3.879  0.452
1985 Greenbaum NL, Wilson DF. The distribution of inorganic phosphate and malate between intra- and extramitochondrial spaces. Relationship with the transmembrane pH difference Journal of Biological Chemistry. 260: 873-879. PMID 2857172  0.307
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