Jon M. Jacobs, Ph.D. - Publications

2002 Montana State University, Bozeman, MT 

75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Emechebe U, Giraud D, Ammi AY, Scott KL, Jacobs JM, McDermott JE, Dykan IV, Alkayed NJ, Barnes AP, Kaul S, Davis CM. Phosphoproteomic response of cardiac endothelial cells to ischemia and ultrasound. Biochimica Et Biophysica Acta. Proteins and Proteomics. 1869: 140683. PMID 34119693 DOI: 10.1016/j.bbapap.2021.140683  0.01
2021 Jarsberg LG, Kedia K, Wendler J, Wright AT, Piehowski PD, Gritsenko MA, Shi T, Lewinsohn DM, Sigal GB, Weiner MH, Smith RD, Keane J, Jacobs JM, Nahid P. Nutritional markers and proteome in patients undergoing treatment for pulmonary tuberculosis differ by geographic region. Plos One. 16: e0250586. PMID 33951066 DOI: 10.1371/journal.pone.0250586  0.01
2021 Tsai CF, Smith JS, Eiger DS, Martin K, Liu T, Smith RD, Shi T, Rajagopal S, Jacobs JM. Mass Spectrometry-Based Proteomics for Analysis of Hydrophilic Phosphopeptides. Methods in Molecular Biology (Clifton, N.J.). 2259: 247-257. PMID 33687720 DOI: 10.1007/978-1-0716-1178-4_16  0.01
2021 Tsai CF, Zhang P, Scholten D, Martin K, Wang YT, Zhao R, Chrisler WB, Patel DB, Dou M, Jia Y, Reduzzi C, Liu X, Moore RJ, Burnum-Johnson KE, Lin MH, ... ... Jacobs JM, et al. Surfactant-assisted one-pot sample preparation for label-free single-cell proteomics. Communications Biology. 4: 265. PMID 33649493 DOI: 10.1038/s42003-021-01797-9  0.01
2019 Deatherage Kaiser BL, Jacobs JM, Schepmoes AA, Brewer HM, Webb-Robertson BM, Valtier S, Bebarta VS, Adkins JN. Assessment of the Utility of the Oral Fluid and Plasma Proteomes for Hydrocodone Exposure. Journal of Medical Toxicology : Official Journal of the American College of Medical Toxicology. PMID 31677050 DOI: 10.1007/S13181-019-00731-0  0.01
2019 Nagarajan A, Zhou M, Nguyen AY, Liberton M, Kedia K, Shi T, Piehowski P, Shukla A, Fillmore TL, Nicora C, Smith RD, Koppenaal DW, Jacobs JM, Pakrasi HB. Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium UTEX 2973. Biomolecules. 9. PMID 31426316 DOI: 10.3390/biom9080374  0.01
2019 Tsai CF, Smith J, Krajewski K, Zhao R, Moghieb AM, Nicora CD, Xiong X, Moore RJ, Liu T, Smith RD, Jacobs JM, Rajagopal S, Shi T. TMT labeling facilitates RPLC-MS analysis of hydrophilic phosphopeptides. Analytical Chemistry. PMID 31418558 DOI: 10.1021/Acs.Analchem.9B01814  0.01
2019 Moghieb A, Tesfay L, Nie S, Gritsenko M, Fillmore TL, Jacobs JM, Smith RD, Torti FM, Torti SV, Shi T, Ansong C. A Targeted Mass Spectrometric Assay for Reliable Sensitive Hepcidin Quantification. Scientific Reports. 9: 7264. PMID 31086210 DOI: 10.1038/S41598-019-43756-9  0.01
2019 Nielson CM, Jacobs JM, Orwoll ES. Proteomic studies of bone and skeletal health outcomes. Bone. PMID 30954730 DOI: 10.1016/j.bone.2019.03.032  0.01
2018 Zhang P, Gaffrey MJ, Zhu Y, Chrisler WB, Fillmore TL, Yi L, Nicora CD, Zhang T, Wu H, Jacobs JM, Tang K, Kagan J, Srivastava S, Rodland KD, Qian WJ, et al. Carrier-assisted single-tube processing approach for targeted proteomics analysis of low numbers of mammalian cells. Analytical Chemistry. PMID 30557009 DOI: 10.1021/Acs.Analchem.8B04258  0.01
2018 Stevens SL, Liu T, Bahjat FR, Petyuk VA, Schepmoes AA, Sontag RL, Gritsenko MA, Wu C, Wang S, Shukla AK, Jacobs JM, Smith RD, Rodland KD, Alexander West G, Kohama SG, et al. Preconditioning in the Rhesus Macaque Induces a Proteomic Signature Following Cerebral Ischemia that Is Associated with Neuroprotection. Translational Stroke Research. PMID 30341719 DOI: 10.1007/S12975-018-0670-7  0.01
2018 Kedia K, Wendler JP, Baker ES, Burnum-Johnson KE, Jarsberg LG, Stratton KG, Wright AT, Piehowski PD, Gritsenko MA, Lewinsohn DM, Sigal GB, Weiner MH, Smith RD, Jacobs JM, Nahid P. Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis. Tuberculosis (Edinburgh, Scotland). 112: 52-61. PMID 30205969 DOI: 10.1016/J.Tube.2018.07.005  0.01
2017 Eisfeld AJ, Halfmann PJ, Wendler JP, Kyle JE, Burnum-Johnson KE, Peralta Z, Maemura T, Walters KB, Watanabe T, Fukuyama S, Yamashita M, Jacobs JM, Kim YM, Casey CP, Stratton KG, et al. Multi-platform 'Omics Analysis of Human Ebola Virus Disease Pathogenesis. Cell Host & Microbe. PMID 29154144 DOI: 10.1016/J.Chom.2017.10.011  0.01
2017 Liberton M, Chrisler WB, Nicora CD, Moore RJ, Smith RD, Koppenaal DW, Pakrasi HB, Jacobs JM. Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803. Plos One. 12: e0173251. PMID 28253354 DOI: 10.1371/Journal.Pone.0173251  0.01
2016 Nakayasu ES, Nicora CD, Sims AC, Burnum-Johnson KE, Kim YM, Kyle JE, Matzke MM, Shukla AK, Chu RK, Schepmoes AA, Jacobs JM, Baric RS, Webb-Robertson BJ, Smith RD, Metz TO. MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses. Msystems. 1. PMID 27822525 DOI: 10.1128/mSystems.00043-16  0.01
2016 Hiras J, Wu YW, Deng K, Nicora CD, Aldrich JT, Frey D, Kolinko S, Robinson EW, Jacobs JM, Adams PD, Northen TR, Simmons BA, Singer SW. Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis. Mbio. 7. PMID 27555310 DOI: 10.1128/Mbio.01106-16  1
2016 Velásquez C, Cheng E, Shuda M, Lee-Oesterreich PJ, Pogge von Strandmann L, Gritsenko MA, Jacobs JM, Moore PS, Chang Y. Mitotic protein kinase CDK1 phosphorylation of mRNA translation regulator 4E-BP1 Ser83 may contribute to cell transformation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27402756 DOI: 10.1073/Pnas.1607768113  0.01
2016 Oxford KL, Wendler JP, McDermott JE, White Iii RA, Powell JD, Jacobs JM, Adkins JN, Waters KM. The landscape of viral proteomics and its potential to impact human health. Expert Review of Proteomics. PMID 27133506 DOI: 10.1080/14789450.2016.1184091  1
2016 Liberton M, Saha R, Jacobs JM, Nguyen AY, Gritsenko MA, Smith RD, Koppenaal DW, Pakrasi HB. Global Proteomic Analysis Reveals an Exclusive Role of Thylakoid Membranes in Bioenergetics of a Model Cyanobacterium. Molecular & Cellular Proteomics : McP. PMID 27056914 DOI: 10.1074/Mcp.M115.057240  1
2016 Nielson CM, Jones KS, Chun RF, Jacobs JM, Wang Y, Hewison M, Adams JS, Swanson CM, Lee CG, Vanderschueren D, Pauwels S, Prentice A, Smith RD, Shi T, Gao Y, et al. Free 25-hydroxyvitamin D: impact of vitamin D binding protein assays on racial-genotypic associations. The Journal of Clinical Endocrinology and Metabolism. jc20161104. PMID 27007693 DOI: 10.1210/Jc.2016-1104  1
2015 Yu J, Liberton M, Cliften PF, Head RD, Jacobs JM, Smith RD, Koppenaal DW, Brand JJ, Pakrasi HB. Synechococcus elongatus UTEX 2973, a fast growing cyanobacterial chassis for biosynthesis using light and CO₂. Scientific Reports. 5: 8132. PMID 25633131 DOI: 10.1038/Srep08132  1
2014 Aevermann BD, Pickett BE, Kumar S, Klem EB, Agnihothram S, Askovich PS, Bankhead A, Bolles M, Carter V, Chang J, Clauss TR, Dash P, Diercks AH, Eisfeld AJ, Ellis A, ... ... Jacobs JM, et al. A comprehensive collection of systems biology data characterizing the host response to viral infection. Scientific Data. 1: 140033. PMID 25977790 DOI: 10.1038/Sdata.2014.33  1
2014 Guo J, Nguyen AY, Dai Z, Su D, Gaffrey MJ, Moore RJ, Jacobs JM, Monroe ME, Smith RD, Koppenaal DW, Pakrasi HB, Qian WJ. Proteome-wide light/dark modulation of thiol oxidation in cyanobacteria revealed by quantitative site-specific redox proteomics. Molecular & Cellular Proteomics : McP. 13: 3270-85. PMID 25118246 DOI: 10.1074/Mcp.M114.041160  1
2014 Govey PM, Jacobs JM, Tilton SC, Loiselle AE, Zhang Y, Freeman WM, Waters KM, Karin NJ, Donahue HJ. Integrative transcriptomic and proteomic analysis of osteocytic cells exposed to fluid flow reveals novel mechano-sensitive signaling pathways. Journal of Biomechanics. 47: 1838-45. PMID 24720889 DOI: 10.1016/J.Jbiomech.2014.03.022  1
2014 Dominy SS, Brown JN, Ryder MI, Gritsenko M, Jacobs JM, Smith RD. Proteomic analysis of saliva in HIV-positive heroin addicts reveals proteins correlated with cognition. Plos One. 9: e89366. PMID 24717448 DOI: 10.1371/Journal.Pone.0089366  1
2014 Baker ES, Burnum-Johnson KE, Jacobs JM, Diamond DL, Brown RN, Ibrahim YM, Orton DJ, Piehowski PD, Purdy DE, Moore RJ, Danielson WF, Monroe ME, Crowell KL, Slysz GW, Gritsenko MA, et al. Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry. Molecular & Cellular Proteomics : McP. 13: 1119-27. PMID 24403597 DOI: 10.1074/Mcp.M113.034595  1
2013 Wang J, Webb-Robertson BJ, Matzke MM, Varnum SM, Brown JN, Riensche RM, Adkins JN, Jacobs JM, Hoidal JR, Scholand MB, Pounds JG, Blackburn MR, Rodland KD, McDermott JE. A semiautomated framework for integrating expert knowledge into disease marker identification. Disease Markers. 35: 513-23. PMID 24223463 DOI: 10.1155/2013/613529  1
2013 Price RW, Peterson J, Fuchs D, Angel TE, Zetterberg H, Hagberg L, Spudich S, Smith RD, Jacobs JM, Brown JN, Gisslen M. Approach to cerebrospinal fluid (CSF) biomarker discovery and evaluation in HIV infection. Journal of Neuroimmune Pharmacology : the Official Journal of the Society On Neuroimmune Pharmacology. 8: 1147-58. PMID 23943280 DOI: 10.1007/S11481-013-9491-3  1
2012 Angel TE, Jacobs JM, Smith RP, Pasternack MS, Elias S, Gritsenko MA, Shukla A, Gilmore EC, McCarthy C, Camp DG, Smith RD, Warren HS. Cerebrospinal fluid proteome of patients with acute Lyme disease. Journal of Proteome Research. 11: 4814-22. PMID 22900834 DOI: 10.1021/Pr300577P  1
2012 Brown JN, Ortiz GM, Angel TE, Jacobs JM, Gritsenko M, Chan EY, Purdy DE, Murnane RD, Larsen K, Palermo RE, Shukla AK, Clauss TR, Katze MG, McCune JM, Smith RD. Morphine produces immunosuppressive effects in nonhuman primates at the proteomic and cellular levels. Molecular & Cellular Proteomics : McP. 11: 605-18. PMID 22580588 DOI: 10.1074/Mcp.M111.016121  1
2012 Angel TE, Jacobs JM, Spudich SS, Gritsenko MA, Fuchs D, Liegler T, Zetterberg H, Camp DG, Price RW, Smith RD. The cerebrospinal fluid proteome in HIV infection: change associated with disease severity. Clinical Proteomics. 9: 3. PMID 22433316 DOI: 10.1186/1559-0275-9-3  1
2012 Diamond DL, Krasnoselsky AL, Burnum KE, Monroe ME, Webb-Robertson BJ, McDermott JE, Yeh MM, Dzib JF, Susnow N, Strom S, Proll SC, Belisle SE, Purdy DE, Rasmussen AL, Walters KA, ... Jacobs JM, et al. Proteome and computational analyses reveal new insights into the mechanisms of hepatitis C virus-mediated liver disease posttransplantation. Hepatology (Baltimore, Md.). 56: 28-38. PMID 22331615 DOI: 10.1002/Hep.25649  1
2012 Aryal UK, Stöckel J, Welsh EA, Gritsenko MA, Nicora CD, Koppenaal DW, Smith RD, Pakrasi HB, Jacobs JM. Dynamic proteome analysis of Cyanothece sp. ATCC 51142 under constant light. Journal of Proteome Research. 11: 609-19. PMID 22060561 DOI: 10.1021/Pr200959X  1
2011 Dresang LR, Teuton JR, Feng H, Jacobs JM, Camp DG, Purvine SO, Gritsenko MA, Li Z, Smith RD, Sugden B, Moore PS, Chang Y. Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes. Bmc Genomics. 12: 625. PMID 22185355 DOI: 10.1186/1471-2164-12-625  1
2011 Aryal UK, Stöckel J, Krovvidi RK, Gritsenko MA, Monroe ME, Moore RJ, Koppenaal DW, Smith RD, Pakrasi HB, Jacobs JM. Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles. Bmc Systems Biology. 5: 194. PMID 22133144 DOI: 10.1186/1752-0509-5-194  1
2011 Webb-Robertson BJ, Matzke MM, Jacobs JM, Pounds JG, Waters KM. A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors. Proteomics. 11: 4736-41. PMID 22038874 DOI: 10.1002/pmic.201100078  1
2011 Matzke MM, Waters KM, Metz TO, Jacobs JM, Sims AC, Baric RS, Pounds JG, Webb-Robertson BJ. Improved quality control processing of peptide-centric LC-MS proteomics data. Bioinformatics (Oxford, England). 27: 2866-72. PMID 21852304 DOI: 10.1093/Bioinformatics/Btr479  1
2011 Wang Y, Yang F, Fu Y, Huang X, Wang W, Jiang X, Gritsenko MA, Zhao R, Monore ME, Pertz OC, Purvine SO, Orton DJ, Jacobs JM, Camp DG, Smith RD, et al. Spatial phosphoprotein profiling reveals a compartmentalized extracellular signal-regulated kinase switch governing neurite growth and retraction. The Journal of Biological Chemistry. 286: 18190-201. PMID 21454597 DOI: 10.1074/Jbc.M111.236133  1
2011 Stöckel J, Jacobs JM, Elvitigala TR, Liberton M, Welsh EA, Polpitiya AD, Gritsenko MA, Nicora CD, Koppenaal DW, Smith RD, Pakrasi HB. Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142. Plos One. 6: e16680. PMID 21364985 DOI: 10.1371/Journal.Pone.0016680  1
2011 Waters KM, Jacobs JM, Gritsenko MA, Karin NJ. Regulation of gene expression and subcellular protein distribution in MLO-Y4 osteocytic cells by lysophosphatidic acid: Relevance to dendrite outgrowth. Bone. 48: 1328-35. PMID 21356339 DOI: 10.1016/j.bone.2011.02.020  1
2011 Teeguarden JG, Webb-Robertson BJ, Waters KM, Murray AR, Kisin ER, Varnum SM, Jacobs JM, Pounds JG, Zanger RC, Shvedova AA. Comparative proteomics and pulmonary toxicity of instilled single-walled carbon nanotubes, crocidolite asbestos, and ultrafine carbon black in mice. Toxicological Sciences : An Official Journal of the Society of Toxicology. 120: 123-35. PMID 21135415 DOI: 10.1093/toxsci/kfq363  1
2010 Angel TE, Luft BJ, Yang X, Nicora CD, Camp DG, Jacobs JM, Smith RD. Proteome analysis of Borrelia burgdorferi response to environmental change. Plos One. 5: e13800. PMID 21072190 DOI: 10.1371/Journal.Pone.0013800  1
2010 Wegener KM, Singh AK, Jacobs JM, Elvitigala T, Welsh EA, Keren N, Gritsenko MA, Ghosh BK, Camp DG, Smith RD, Pakrasi HB. Global proteomics reveal an atypical strategy for carbon/nitrogen assimilation by a cyanobacterium under diverse environmental perturbations. Molecular & Cellular Proteomics : McP. 9: 2678-89. PMID 20858728 DOI: 10.1074/Mcp.M110.000109  1
2010 Brown JN, Palermo RE, Baskin CR, Gritsenko M, Sabourin PJ, Long JP, Sabourin CL, Bielefeldt-Ohmann H, García-Sastre A, Albrecht R, Tumpey TM, Jacobs JM, Smith RD, Katze MG. Macaque proteome response to highly pathogenic avian influenza and 1918 reassortant influenza virus infections. Journal of Virology. 84: 12058-68. PMID 20844032 DOI: 10.1128/Jvi.01129-10  1
2010 Webb-Robertson BJ, McCue LA, Waters KM, Matzke MM, Jacobs JM, Metz TO, Varnum SM, Pounds JG. Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data. Journal of Proteome Research. 9: 5748-56. PMID 20831241 DOI: 10.1021/Pr1005247  1
2010 Zhang X, Monroe ME, Chen B, Chin MH, Heibeck TH, Schepmoes AA, Yang F, Petritis BO, Camp DG, Pounds JG, Jacobs JM, Smith DJ, Bigelow DJ, Smith RD, Qian WJ. Endogenous 3,4-dihydroxyphenylalanine and dopaquinone modifications on protein tyrosine: links to mitochondrially derived oxidative stress via hydroxyl radical. Molecular & Cellular Proteomics : McP. 9: 1199-208. PMID 20124354 DOI: 10.1074/Mcp.M900321-Mcp200  1
2010 Diamond DL, Syder AJ, Jacobs JM, Sorensen CM, Walters KA, Proll SC, McDermott JE, Gritsenko MA, Zhang Q, Zhao R, Metz TO, Camp DG, Waters KM, Smith RD, Rice CM, et al. Temporal proteome and lipidome profiles reveal hepatitis C virus-associated reprogramming of hepatocellular metabolism and bioenergetics. Plos Pathogens. 6: e1000719. PMID 20062526 DOI: 10.1371/Journal.Ppat.1000719  1
2009 Chan EY, Sutton JN, Jacobs JM, Bondarenko A, Smith RD, Katze MG. Dynamic host energetics and cytoskeletal proteomes in human immunodeficiency virus type 1-infected human primary CD4 cells: analysis by multiplexed label-free mass spectrometry. Journal of Virology. 83: 9283-95. PMID 19587052 DOI: 10.1128/Jvi.00814-09  1
2008 Welsh EA, Liberton M, Stöckel J, Loh T, Elvitigala T, Wang C, Wollam A, Fulton RS, Clifton SW, Jacobs JM, Aurora R, Ghosh BK, Sherman LA, Smith RD, Wilson RK, et al. The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle. Proceedings of the National Academy of Sciences of the United States of America. 105: 15094-9. PMID 18812508 DOI: 10.1073/Pnas.0805418105  1
2008 Ding SJ, Wang Y, Jacobs JM, Qian WJ, Yang F, Tolmachev AV, Du X, Wang W, Moore RJ, Monroe ME, Purvine SO, Waters K, Heibeck TH, Adkins JN, Camp DG, et al. Quantitative phosphoproteome analysis of lysophosphatidic acid induced chemotaxis applying dual-step (18)O labeling coupled with immobilized metal-ion affinity chromatography. Journal of Proteome Research. 7: 4215-24. PMID 18785766 DOI: 10.1021/Pr7007785  1
2008 Wegener KM, Welsh EA, Thornton LE, Keren N, Jacobs JM, Hixson KK, Monroe ME, Camp DG, Smith RD, Pakrasi HB. High sensitivity proteomics assisted discovery of a novel operon involved in the assembly of photosystem II, a membrane protein complex. The Journal of Biological Chemistry. 283: 27829-37. PMID 18693241 DOI: 10.1074/Jbc.M803918200  1
2008 Dumortier J, Streblow DN, Moses AV, Jacobs JM, Kreklywich CN, Camp D, Smith RD, Orloff SL, Nelson JA. Human cytomegalovirus secretome contains factors that induce angiogenesis and wound healing. Journal of Virology. 82: 6524-35. PMID 18448536 DOI: 10.1128/Jvi.00502-08  0.01
2008 Jacobs JM, Waters KM, Kathmann LE, Camp DG, Wiley HS, Smith RD, Thrall BD. The mammary epithelial cell secretome and its regulation by signal transduction pathways. Journal of Proteome Research. 7: 558-69. PMID 18166007 DOI: 10.1021/Pr0704377  1
2008 Metz TO, Qian WJ, Jacobs JM, Gritsenko MA, Moore RJ, Polpitiya AD, Monroe ME, Camp DG, Mueller PW, Smith RD. Application of proteomics in the discovery of candidate protein biomarkers in a diabetes autoantibody standardization program sample subset. Journal of Proteome Research. 7: 698-707. PMID 18092746 DOI: 10.1021/Pr700606W  1
2007 Metz TO, Zhang Q, Page JS, Shen Y, Callister SJ, Jacobs JM, Smith RD. The future of liquid chromatography-mass spectrometry (LC-MS) in metabolic profiling and metabolomic studies for biomarker discovery. Biomarkers in Medicine. 1: 159-185. PMID 19177179 DOI: 10.2217/17520363.1.1.159  0.01
2007 Wilkinson RA, Evans JR, Jacobs JM, Slunaker D, Pincus SH, Pinter A, Parkos CA, Burritt JB, Teintze M. Peptides selected from a phage display library with an HIV-neutralizing antibody elicit antibodies to HIV gp120 in rabbits, but not to the same epitope. Aids Research and Human Retroviruses. 23: 1416-27. PMID 18184085 DOI: 10.1089/Aid.2007.0027  1
2007 Wang Y, Ding SJ, Wang W, Yang F, Jacobs JM, Camp D, Smith RD, Klemke RL. Methods for pseudopodia purification and proteomic analysis. Science's Stke : Signal Transduction Knowledge Environment. 2007: pl4. PMID 17712138 DOI: 10.1126/Stke.4002007Pl4  1
2007 Diamond DL, Jacobs JM, Paeper B, Proll SC, Gritsenko MA, Carithers RL, Larson AM, Yeh MM, Camp DG, Smith RD, Katze MG. Proteomic profiling of human liver biopsies: hepatitis C virus-induced fibrosis and mitochondrial dysfunction. Hepatology (Baltimore, Md.). 46: 649-57. PMID 17654742 DOI: 10.1002/Hep.21751  1
2007 Wang Y, Ding SJ, Wang W, Jacobs JM, Qian WJ, Moore RJ, Yang F, Camp DG, Smith RD, Klemke RL. Profiling signaling polarity in chemotactic cells. Proceedings of the National Academy of Sciences of the United States of America. 104: 8328-33. PMID 17494752 DOI: 10.1073/Pnas.0701103104  1
2006 Metz TO, Jacobs JM, Gritsenko MA, Fontès G, Qian WJ, Camp DG, Poitout V, Smith RD. Characterization of the human pancreatic islet proteome by two-dimensional LC/MS/MS. Journal of Proteome Research. 5: 3345-54. PMID 17137336 DOI: 10.1021/Pr060322N  1
2006 Qian WJ, Jacobs JM, Liu T, Camp DG, Smith RD. Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applications. Molecular & Cellular Proteomics : McP. 5: 1727-44. PMID 16887931 DOI: 10.1074/Mcp.M600162-Mcp200  1
2006 Diamond DL, Proll SC, Jacobs JM, Chan EY, Camp DG, Smith RD, Katze MG. HepatoProteomics: Applying proteomic technologies to the study of liver function and disease Hepatology. 44: 299-308. PMID 16871559 DOI: 10.1002/Hep.21318  1
2005 Shen Y, Kim J, Strittmatter EF, Jacobs JM, Camp DG, Fang R, Tolié N, Moore RJ, Smith RD. Characterization of the human blood plasma proteome. Proteomics. 5: 4034-45. PMID 16152657 DOI: 10.1002/Pmic.200401246  1
2005 Jacobs JM, Adkins JN, Qian WJ, Liu T, Shen Y, Camp DG, Smith RD. Utilizing human blood plasma for proteomic biomarker discovery. Journal of Proteome Research. 4: 1073-85. PMID 16083256 DOI: 10.1021/Pr0500657  1
2005 Adkins JN, Monroe ME, Auberry KJ, Shen Y, Jacobs JM, Camp DG, Vitzthum F, Rodland KD, Zangar RC, Smith RD, Pounds JG. A proteomic study of the HUPO Plasma Proteome Project's pilot samples using an accurate mass and time tag strategy. Proteomics. 5: 3454-66. PMID 16052625 DOI: 10.1002/Pmic.200401333  1
2005 Jacobs JM, Diamond DL, Chan EY, Gritsenko MA, Qian W, Stastna M, Baas T, Camp DG, Carithers RL, Smith RD, Katze MG. Proteome analysis of liver cells expressing a full-length hepatitis C virus (HCV) replicon and biopsy specimens of posttransplantation liver from HCV-infected patients Journal of Virology. 79: 7558-7569. PMID 15919910 DOI: 10.1128/Jvi.79.12.7558-7569.2005  1
2005 Jacobs JM, Yang X, Luft BJ, Dunn JJ, Camp DG, Smith RD. Proteomic analysis of Lyme disease: global protein comparison of three strains of Borrelia burgdorferi. Proteomics. 5: 1446-53. PMID 15800874 DOI: 10.1002/Pmic.200401052  1
2005 Qian WJ, Monroe ME, Liu T, Jacobs JM, Anderson GA, Shen Y, Moore RJ, Anderson DJ, Zhang R, Calvano SE, Lowry SF, Xiao W, Moldawer LL, Davis RW, Tompkins RG, et al. Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach. Molecular & Cellular Proteomics : McP. 4: 700-9. PMID 15753121 DOI: 10.1074/Mcp.M500045-Mcp200  1
2005 Liu T, Qian WJ, Chen WN, Jacobs JM, Moore RJ, Anderson DJ, Gritsenko MA, Monroe ME, Thrall BD, Camp DG, Smith RD. Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome. Proteomics. 5: 1263-73. PMID 15742320 DOI: 10.1002/Pmic.200401055  1
2005 Qian WJ, Liu T, Monroe ME, Strittmatter EF, Jacobs JM, Kangas LJ, Petritis K, Camp DG, Smith RD. Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome. Journal of Proteome Research. 4: 53-62. PMID 15707357 DOI: 10.1021/Pr0498638  1
2005 Qian WJ, Jacobs JM, Camp DG, Monroe ME, Moore RJ, Gritsenko MA, Calvano SE, Lowry SF, Xiao W, Moldawer LL, Davis RW, Tompkins RG, Smith RD. Comparative proteome analyses of human plasma following in vivo lipopolysaccharide administration using multidimensional separations coupled with tandem mass spectrometry. Proteomics. 5: 572-84. PMID 15627965 DOI: 10.1002/Pmic.200400942  1
2004 Strittmatter EF, Kangas LJ, Petritis K, Mottaz HM, Anderson GA, Shen Y, Jacobs JM, Camp DG, Smith RD. Application of peptide LC retention time information in a discriminant function for peptide identification by tandem mass spectrometry. Journal of Proteome Research. 3: 760-9. PMID 15359729 DOI: 10.1021/Pr049965Y  1
2004 Jacobs JM, Mottaz HM, Yu LR, Anderson DJ, Moore RJ, Chen WN, Auberry KJ, Strittmatter EF, Monroe ME, Thrall BD, Camp DG, Smith RD. Multidimensional proteome analysis of human mammary epithelial cells. Journal of Proteome Research. 3: 68-75. PMID 14998165 DOI: 10.1021/Pr034062A  1
2004 Shen Y, Jacobs JM, Camp DG, Fang R, Moore RJ, Smith RD, Xiao W, Davis RW, Tompkins RG. Ultra-high-efficiency strong cation exchange LC/RPLC/MS/MS for high dynamic range characterization of the human plasma proteome. Analytical Chemistry. 76: 1134-44. PMID 14961748 DOI: 10.1021/Ac034869M  1
2003 Jacobs JM, Bailey BW, Burritt JB, Morrison SG, Morrison RP, Dratz EA, Jesaitis AJ, Teintze M. QSYP peptide sequence is selected from phage display libraries by bovine IgG contaminants in monoclonal antibody preparations. Biotechniques. 34: 132-4, 137-41. PMID 12545550 DOI: 10.2144/03341Rr04  1
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