| Year |
Citation |
Score |
| 2024 |
Neale DB, Zimin AV, Meltzer A, Bhattarai A, Amee M, Figueroa Corona L, Allen BJ, Puiu D, Wright J, De La Torre AR, McGuire PE, Timp W, Salzberg SL, Wegrzyn JL. A Genome Sequence for the Threatened Whitebark Pine. G3 (Bethesda, Md.). PMID 38526344 DOI: 10.1093/g3journal/jkae061 |
0.328 |
|
| 2023 |
Neale DB, Zimin AV, Meltzer A, Bhattarai A, Amee M, Corona LF, Allen BJ, Puiu D, Wright J, Torre AR, McGuire PE, Timp W, Salzberg SL, Wegrzyn JL. A Genome Sequence for the Threatened Whitebark Pine. Biorxiv : the Preprint Server For Biology. PMID 38014212 DOI: 10.1101/2023.11.16.567420 |
0.327 |
|
| 2022 |
Arab MM, Brown PJ, Abdollahi-Arpanahi R, Sohrabi SS, Askari H, Aliniaeifard S, Mokhtassi-Bidgoli A, Mesgaran MB, Leslie CA, Marrano A, Neale DB, Vahdati K. Genome-wide association analysis and pathway enrichment provide insights into the genetic basis of photosynthetic responses to drought stress in Persian walnut. Horticulture Research. 9: uhac124. PMID 35928405 DOI: 10.1093/hr/uhac124 |
0.432 |
|
| 2022 |
Neale DB, Zimin AV, Zaman S, Scott AD, Shrestha B, Workman RE, Puiu D, Allen BJ, Moore ZJ, Sekhwal MK, De La Torre AR, McGuire PE, Burns E, Timp W, Wegrzyn JL, et al. Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin. G3 (Bethesda, Md.). 12. PMID 35100403 DOI: 10.1093/g3journal/jkab380 |
0.341 |
|
| 2021 |
De La Torre AR, Sekhwal MK, Puiu D, Salzberg SL, Scott AD, Allen B, Neale DB, Chin ARO, Buckley TN. Genome-wide association identifies candidate genes for drought tolerance in coast redwood and giant sequoia. The Plant Journal : For Cell and Molecular Biology. PMID 34800071 DOI: 10.1111/tpj.15592 |
0.402 |
|
| 2021 |
De La Torre AR, Wilhite B, Puiu D, St Clair JB, Crepeau MW, Salzberg SL, Langley CH, Allen B, Neale DB. Dissecting the Polygenic Basis of Cold Adaptation Using Genome-Wide Association of Traits and Environmental Data in Douglas-fir. Genes. 12. PMID 33477542 DOI: 10.3390/genes12010110 |
0.392 |
|
| 2020 |
Sideli GM, McAtee P, Marrano A, Allen BJ, Brown PJ, Butterfield TS, Dandekar AM, Leslie CA, Neale DB. Genetic Analysis of Walnut ( L.) Pellicle Pigment Variation Through a Novel, High-Throughput Phenotyping Platform. G3 (Bethesda, Md.). PMID 33008832 DOI: 10.1534/g3.120.401580 |
0.401 |
|
| 2020 |
Scott AD, Zimin AV, Puiu D, Workman R, Britton M, Zaman S, Caballero M, Read AC, Bogdanove AJ, Burns E, Wegrzyn J, Timp W, Salzberg SL, Neale DB. A Reference Genome Sequence for Giant Sequoia. G3 (Bethesda, Md.). PMID 32948606 DOI: 10.1534/G3.120.401612 |
0.408 |
|
| 2020 |
Montanari S, Postman J, Bassil NV, Neale DB. Reconstruction of the Largest Pedigree Network for Pear Cultivars and Evaluation of the Genetic Diversity of the USDA-ARS National Collection. G3 (Bethesda, Md.). PMID 32675069 DOI: 10.1534/G3.120.401327 |
0.502 |
|
| 2020 |
Weiss M, Sniezko RA, Puiu D, Crepeau MW, Stevens K, Salzberg SL, Langley CH, Neale DB, De La Torre AR. Genomic basis of white pine blister rust quantitative disease resistance and its relationship with qualitative resistance. The Plant Journal : For Cell and Molecular Biology. PMID 32654344 DOI: 10.1111/Tpj.14928 |
0.448 |
|
| 2020 |
Sideli GM, Marrano A, Montanari S, Leslie CA, Allen BJ, Cheng H, Brown PJ, Neale DB. Quantitative phenotyping of shell suture strength in walnut (Juglans regia L.) enhances precision for detection of QTL and genome-wide association mapping. Plos One. 15: e0231144. PMID 32271818 DOI: 10.1371/Journal.Pone.0231144 |
0.459 |
|
| 2020 |
Bernard A, Marrano A, Donkpegan A, Brown PJ, Leslie CA, Neale DB, Lheureux F, Dirlewanger E. Association and linkage mapping to unravel genetic architecture of phenological traits and lateral bearing in Persian walnut (Juglans regia L.). Bmc Genomics. 21: 203. PMID 32131731 DOI: 10.1186/S12864-020-6616-Y |
0.501 |
|
| 2020 |
Zurn JD, Nyberg A, Montanari S, Postman J, Neale D, Bassil N. A new SSR fingerprinting set and its comparison to existing SSR- and SNP-based genotyping platforms to manage Pyrus germplasm resources Tree Genetics & Genomes. 16: 1-10. DOI: 10.1007/S11295-020-01467-7 |
0.469 |
|
| 2019 |
Trouern-Trend A, Falk T, Zaman S, Caballero M, Neale DB, Langley CH, Dandekar A, Stevens KA, Wegrzyn JL. Comparative Genomics of Six Juglans Species Reveals Disease-associated Gene Family Contractions. The Plant Journal : For Cell and Molecular Biology. PMID 31823432 DOI: 10.1111/Tpj.14630 |
0.447 |
|
| 2019 |
Linsmith G, Rombauts S, Montanari S, Deng CH, Celton JM, Guérif P, Liu C, Lohaus R, Zurn JD, Cestaro A, Bassil NV, Bakker LV, Schijlen E, Gardiner SE, Lespinasse Y, ... ... Neale DB, et al. Pseudo-chromosome-length genome assembly of a double haploid "Bartlett" pear (Pyrus communis L.). Gigascience. 8. PMID 31816089 DOI: 10.1093/gigascience/giz138 |
0.311 |
|
| 2019 |
Guerra FP, Suren H, Holliday J, Richards JH, Fiehn O, Famula R, Stanton BJ, Shuren R, Sykes R, Davis MF, Neale DB. Exome resequencing and GWAS for growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa. Bmc Genomics. 20: 875. PMID 31747881 DOI: 10.1186/S12864-019-6160-9 |
0.505 |
|
| 2019 |
Arab MM, Marrano A, Abdollahi-Arpanahi R, Leslie CA, Cheng H, Neale DB, Vahdati K. Combining phenotype, genotype and environment to uncover genetic components underlying water use efficiency in Persian walnut. Journal of Experimental Botany. PMID 31639822 DOI: 10.1093/Jxb/Erz467 |
0.503 |
|
| 2019 |
Marrano A, Sideli GM, Leslie CA, Cheng H, Neale DB. Deciphering of the Genetic Control of Phenology, Yield, and Pellicle Color in Persian Walnut ( L.). Frontiers in Plant Science. 10: 1140. PMID 31616449 DOI: 10.3389/Fpls.2019.01140 |
0.534 |
|
| 2019 |
De La Torre AR, Wilhite B, Neale DB. Environmental genome-wide association reveal climate adaptation is shaped by subtle to moderate allele frequency shifts in loblolly pine. Genome Biology and Evolution. PMID 31599932 DOI: 10.1093/Gbe/Evz220 |
0.489 |
|
| 2019 |
Mosca E, Cruz F, Gómez-Garrido J, Bianco L, Rellstab C, Brodbeck S, Csilléry K, Fady B, Fladung M, Fussi B, Gömöry D, González-Martínez SC, Grivet D, Gut M, Hansen OK, ... ... Neale DB, et al. A Reference Genome Sequence for the European Silver Fir ( Mill.): A Community-Generated Genomic Resource. G3 (Bethesda, Md.). PMID 31217262 DOI: 10.1534/G3.119.400083 |
0.435 |
|
| 2019 |
Montanari S, Bianco L, Allen BJ, Martínez-García PJ, Bassil NV, Postman J, Knäbel M, Kitson B, Deng CH, Chagné D, Crepeau MW, Langley CH, Evans K, Dhingra A, Troggio M, ... Neale DB, et al. Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization. Bmc Genomics. 20: 331. PMID 31046664 DOI: 10.1186/S12864-019-5712-3 |
0.502 |
|
| 2019 |
Arab MM, Marrano A, Abdollahi-Arpanahi R, Leslie CA, Askari H, Neale DB, Vahdati K. Genome-wide patterns of population structure and association mapping of nut-related traits in Persian walnut populations from Iran using the Axiom J. regia 700K SNP array. Scientific Reports. 9: 6376. PMID 31015545 DOI: 10.1038/S41598-019-42940-1 |
0.538 |
|
| 2019 |
Famula RA, Richards JH, Famula TR, Neale DB. Association genetics of carbon isotope discrimination and leaf morphology in a breeding population of Juglans regia L. Tree Genetics & Genomes. 15: 1-13. DOI: 10.1007/S11295-018-1307-4 |
0.5 |
|
| 2019 |
Durán R, Rodriguez V, Carrasco A, Neale D, Balocchi C, Valenzuela S. SNP discovery in radiata pine using a de novo transcriptome assembly Trees-Structure and Function. 33: 1505-1511. DOI: 10.1007/S00468-019-01875-W |
0.449 |
|
| 2018 |
Marrano A, Martínez-García PJ, Bianco L, Sideli GM, Di Pierro EA, Leslie CA, Stevens KA, Crepeau MW, Troggio M, Langley CH, Neale DB. A new genomic tool for walnut (Juglans regia L.): development and validation of the high-density Axiom™ J. regia 700K SNP genotyping array. Plant Biotechnology Journal. PMID 30515952 DOI: 10.1111/Pbi.13034 |
0.501 |
|
| 2018 |
De La Torre AR, Puiu D, Crepeau MW, Stevens K, Salzberg SL, Langley CH, Neale DB. Genomic architecture of complex traits in loblolly pine. The New Phytologist. PMID 30318590 DOI: 10.1111/Nph.15535 |
0.549 |
|
| 2018 |
Marrano A, Micheletti D, Lorenzi S, Neale D, Grando MS. Genomic signatures of different adaptations to environmental stimuli between wild and cultivated L. Horticulture Research. 5: 34. PMID 29977570 DOI: 10.1038/S41438-018-0041-2 |
0.556 |
|
| 2018 |
Stevens KA, Woeste K, Chakraborty S, Crepeau MW, Leslie CA, Martínez-García PJ, Puiu D, Romero-Severson J, Coggeshall M, Dandekar AM, Kluepfel D, Neale DB, Salzberg SL, Langley CH. Genomic Variation Among and Within Six Species. G3 (Bethesda, Md.). PMID 29792315 DOI: 10.1534/G3.118.200030 |
0.459 |
|
| 2018 |
Baker EAG, Wegrzyn JL, Sezen UU, Falk T, Maloney PE, Vogler DR, Delfino-Mix A, Jensen C, Mitton J, Wright J, Knaus B, Rai H, Cronn R, Gonzalez-Ibeas D, Vasquez-Gross HA, ... ... Neale DB, et al. Comparative Transcriptomics Among Four White Pine Species. G3 (Bethesda, Md.). PMID 29559535 DOI: 10.1534/G3.118.200257 |
0.439 |
|
| 2018 |
Vangestel C, Eckert AJ, Wegrzyn JL, Clair JBS, Neale DB. Linking phenotype, genotype and environment to unravel genetic components underlying cold hardiness in coastal Douglas-fir (Pseudotsuga menziesii var. menziesii) Tree Genetics & Genomes. 14: 10. DOI: 10.1007/S11295-017-1225-X |
0.535 |
|
| 2017 |
Mosca E, Di Pierro EA, Budde KB, Neale DB, González-Martínez SC. Environmental effects on fine-scale spatial genetic structure in four Alpine keystone forest tree species. Molecular Ecology. PMID 29274175 DOI: 10.1111/Mec.14469 |
0.413 |
|
| 2017 |
Grivet D, Avia K, Vaattovaara A, Eckert AJ, Neale DB, Savolainen O, González-Martínez SC. High rate of adaptive evolution in two widespread European pines. Molecular Ecology. PMID 29110402 DOI: 10.1111/Mec.14402 |
0.43 |
|
| 2017 |
Zimin AV, Stevens KA, Crepeau MW, Puiu D, Wegrzyn JL, Yorke JA, Langley CH, Neale DB, Salzberg SL. Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. Gigascience. 6: 1. PMID 29020755 DOI: 10.1093/Gigascience/Gix072 |
0.312 |
|
| 2017 |
Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Zimin AV, Puiu D, Pertea GM, Sezen UU, Casola C, Koralewski TE, Paul R, Gonzalez-Ibeas D, Zaman S, et al. The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae. G3 (Bethesda, Md.). PMID 28751502 DOI: 10.1534/G3.117.300078 |
0.423 |
|
| 2017 |
Cronn R, Dolan PC, Jogdeo S, Wegrzyn JL, Neale DB, St Clair JB, Denver DR. Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles. Bmc Genomics. 18: 558. PMID 28738815 DOI: 10.1186/S12864-017-3916-Y |
0.357 |
|
| 2017 |
Ćalić I, Koch J, Carey D, Addo-Quaye C, Carlson JE, Neale DB. Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.). Bmc Genomics. 18: 547. PMID 28728575 DOI: 10.1186/S12864-017-3931-Z |
0.364 |
|
| 2017 |
Zimin AV, Stevens KA, Crepeau MW, Puiu D, Wegrzyn JL, Yorke JA, Langley CH, Neale DB, Salzberg SL. An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing. Gigascience. 6: 1-4. PMID 28369353 DOI: 10.1093/Gigascience/Giw016 |
0.312 |
|
| 2017 |
Lind BM, Friedline CJ, Wegrzyn JL, Maloney PE, Vogler DR, Neale DB, Eckert AJ. Water availability drives signatures of local adaptation in whitebark pine (Pinus albicaulis Englm.) across fine spatial scales of the Lake Tahoe Basin, USA. Molecular Ecology. PMID 28316116 DOI: 10.1111/Mec.14106 |
0.48 |
|
| 2017 |
Neale DB, Martínez-García PJ, De La Torre AR, Montanari S, Wei XX. Novel Insights into Tree Biology and Genome Evolution as Revealed Through Genomics. Annual Review of Plant Biology. PMID 28226237 DOI: 10.1146/Annurev-Arplant-042916-041049 |
0.467 |
|
| 2017 |
Di Pierro EA, Mosca E, González-Martínez SC, Binelli G, Neale DB, La Porta N. Adaptive variation in natural Alpine populations of Norway spruce (Picea abies [L.] Karst) at regional scale: Landscape features and altitudinal gradient effects Forest Ecology and Management. 405: 350-359. DOI: 10.1016/J.Foreco.2017.09.045 |
0.482 |
|
| 2017 |
Vázquez-Lobo A, Torre ARDL, Martínez-García PJ, Vangestel C, Wegzryn JL, Ćalić I, Burton D, Davis D, Kinloch B, Vogler D, Neale DB. Finding loci associated to partial resistance to white pine blister rust in sugar pine (Pinus lambertiana Dougl.). Tree Genetics & Genomes. 13: 108. DOI: 10.1007/S11295-017-1190-4 |
0.423 |
|
| 2017 |
Martínez-García PJ, Famula RA, Leslie C, McGranahan GH, Famula TR, Neale DB. Predicting breeding values and genetic components using generalized linear mixed models for categorical and continuous traits in walnut (Juglans regia) Tree Genetics & Genomes. 13. DOI: 10.1007/S11295-017-1187-Z |
0.414 |
|
| 2017 |
Carrasco A, Wegrzyn JL, Durán R, Fernández M, Donoso A, Rodriguez V, Neale D, Valenzuela S. Expression profiling in Pinus radiata infected with Fusarium circinatum Tree Genetics & Genomes. 13: 46. DOI: 10.1007/S11295-017-1125-0 |
0.461 |
|
| 2016 |
Kujala ST, Knürr T, Kärkkäinen K, Neale DB, Sillanpää MJ, Savolainen O. Genetic heterogeneity underlying variation in a locally adaptive clinal trait in Pinus sylvestris revealed by a Bayesian multipopulation analysis. Heredity. 118: 413-423. PMID 27901510 DOI: 10.1038/Hdy.2016.115 |
0.45 |
|
| 2016 |
Gonzalez-Ibeas D, Martinez-Garcia PJ, Famula RA, Delfino-Mix A, Stevens KA, Loopstra CA, Langley CH, Neale DB, Wegrzyn JL. Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana). G3 (Bethesda, Md.). PMID 27799338 DOI: 10.1534/G3.116.032805 |
0.445 |
|
| 2016 |
Stevens KA, Wegrzyn J, Zimin A, Puiu D, Crepeau M, Cardeno C, Paul R, Gonzalez-Ibeaz D, Koriabine M, Holtz-Morris A, Martinez-Garcia P, Sezen U, Marcais G, Jermstad K, McGuire P, ... ... Neale DB, et al. Sequence of the Sugar Pine Megagenome. Genetics. PMID 27794028 DOI: 10.1534/Genetics.116.193227 |
0.468 |
|
| 2016 |
Xiong JS, McKeand SE, Isik F, Wegrzyn J, Neale DB, Zeng ZB, da Costa E Silva L, Whetten RW. Quantitative trait loci influencing forking defects in an outbred pedigree of loblolly pine. Bmc Genetics. 17: 138. PMID 27756221 DOI: 10.1186/S12863-016-0446-6 |
0.38 |
|
| 2016 |
Martínez-García PJ, Crepeau MW, Puiu D, Gonzalez-Ibeas D, Whalen J, Stevens KA, Paul R, Butterfield TS, Britton MT, Reagan RL, Chakraborty S, Walawage SL, Vasquez-Gross HA, Cardeno C, Famula RA, ... ... Neale DB, et al. The walnut (Juglans regia) genome sequence reveals diversity in genes coding for the biosynthesis of nonstructural polyphenols. The Plant Journal : For Cell and Molecular Biology. PMID 27145194 DOI: 10.1111/Tpj.13207 |
0.477 |
|
| 2016 |
Maloney PE, Eckert AJ, Vogler DR, Jensen CE, Mix AD, Neale DB. Landscape biology of western white pine: Implications for conservation of a widely-distributed five-needle pine at its southern range limit Forests. 7. DOI: 10.3390/F7050093 |
0.411 |
|
| 2016 |
Vangestel C, Vázquez-Lobo A, Martínez-García PJ, Calic I, Wegrzyn JL, Neale DB. Patterns of neutral and adaptive genetic diversity across the natural range of sugar pine (Pinus lambertiana Dougl.) Tree Genetics and Genomes. 12. DOI: 10.1007/S11295-016-0998-7 |
0.526 |
|
| 2016 |
Wegrzyn JL, Whalen J, Kinlaw CS, Harry DE, Puryear J, Loopstra CA, Gonzalez-Ibeas D, Vasquez-Gross HA, Famula RA, Neale DB. Transcriptomic profile of leaf tissue from the leguminous tree, Millettia pinnata Tree Genetics and Genomes. 12. DOI: 10.1007/S11295-016-0986-Y |
0.423 |
|
| 2016 |
Di Pierro EA, Mosca E, Rocchini D, Binelli G, Neale DB, La Porta N. Climate-related adaptive genetic variation and population structure in natural stands of Norway spruce in the South-Eastern Alps Tree Genetics and Genomes. 12: 1-15. DOI: 10.1007/S11295-016-0972-4 |
0.487 |
|
| 2016 |
Guerra FP, Richards JH, Fiehn O, Famula R, Stanton BJ, Shuren R, Sykes R, Davis MF, Neale DB. Analysis of the genetic variation in growth, ecophysiology, and chemical and metabolomic composition of wood of Populus trichocarpa provenances Tree Genetics and Genomes. 12: 1-16. DOI: 10.1007/S11295-015-0965-8 |
0.452 |
|
| 2016 |
Mosca E, Gugerli F, Eckert AJ, Neale DB. Signatures of natural selection on Pinus cembra and P. mugo along elevational gradients in the Alps Tree Genetics and Genomes. 12: 1-15. DOI: 10.1007/S11295-015-0964-9 |
0.454 |
|
| 2016 |
Ćalić I, Bussotti F, Martínez-García PJ, Neale DB. Recent landscape genomics studies in forest trees—what can we believe? Tree Genetics and Genomes. 12: 1-7. DOI: 10.1007/S11295-015-0960-0 |
0.485 |
|
| 2015 |
Chakraborty S, Britton M, Wegrzyn J, Butterfield T, Rao BJ, Leslie CA, Aradhaya M, Neale D, Woeste K, Dandekar AM. YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut. F1000research. 4: 155. PMID 26870317 DOI: 10.12688/F1000Research.6617.2 |
0.328 |
|
| 2015 |
Westbrook JW, Chhatre VE, Wu LS, Chamala S, Neves LG, Muñoz P, Martínez-García PJ, Neale DB, Kirst M, Mockaitis K, Nelson CD, Peter GF, Davis JM, Echt CS. A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of P. taeda. G3 (Bethesda, Md.). PMID 26068575 DOI: 10.1534/G3.115.019588 |
0.459 |
|
| 2015 |
Westbrook JW, Walker AR, Neves LG, Munoz P, Resende MF, Neale DB, Wegrzyn JL, Huber DA, Kirst M, Davis JM, Peter GF. Discovering candidate genes that regulate resin canal number in Pinus taeda stems by integrating genetic analysis across environments, ages, and populations. The New Phytologist. 205: 627-41. PMID 25266813 DOI: 10.1111/Nph.13074 |
0.534 |
|
| 2015 |
Wheeler NC, Steiner KC, Schlarbaum SE, Neale DB. The evolution of forest genetics and tree improvement research in the United States Journal of Forestry. 113: 500-510. DOI: 10.5849/Jof.14-120 |
0.341 |
|
| 2015 |
Eckert AJ, Maloney PE, Vogler DR, Jensen CE, Mix AD, Neale DB. Local adaptation at fine spatial scales: an example from sugar pine (Pinus lambertiana, Pinaceae) Tree Genetics and Genomes. 11. DOI: 10.1007/S11295-015-0863-0 |
0.513 |
|
| 2014 |
Scalfi M, Mosca E, Di Pierro EA, Troggio M, Vendramin GG, Sperisen C, La Porta N, Neale DB. Micro- and macro-geographic scale effect on the molecular imprint of selection and adaptation in Norway spruce. Plos One. 9: e115499. PMID 25551624 DOI: 10.1371/Journal.Pone.0115499 |
0.445 |
|
| 2014 |
DeGiorgio M, Syring J, Eckert AJ, Liston A, Cronn R, Neale DB, Rosenberg NA. An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines. Bmc Evolutionary Biology. 14: 67. PMID 24678701 DOI: 10.1186/1471-2148-14-67 |
0.353 |
|
| 2014 |
Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, ... ... Neale DB, et al. Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation. Genetics. 196: 891-909. PMID 24653211 DOI: 10.1534/Genetics.113.159996 |
0.455 |
|
| 2014 |
Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, Puiu D, Roberts M, Wegrzyn JL, de Jong PJ, Neale DB, Salzberg SL, Yorke JA, Langley CH. Sequencing and assembly of the 22-gb loblolly pine genome. Genetics. 196: 875-90. PMID 24653210 DOI: 10.1534/Genetics.113.159715 |
0.378 |
|
| 2014 |
Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, MartÃnez-GarcÃa PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, et al. Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies. Genome Biology. 15: R59. PMID 24647006 DOI: 10.1186/Gb-2014-15-3-R59 |
0.436 |
|
| 2014 |
Mosca E, González-Martínez SC, Neale DB. Environmental versus geographical determinants of genetic structure in two subalpine conifers. The New Phytologist. 201: 180-92. PMID 24102203 DOI: 10.1111/Nph.12476 |
0.441 |
|
| 2014 |
Quesada T, Resende MFR, Muñoz P, Wegrzyn JL, Neale DB, Kirst M, Peter GF, Gezan SA, Nelson CD, Davis JM. Mapping fusiform rust resistance genes within a complex mating design of loblolly pine Forests. 5: 347-362. DOI: 10.3390/F5020347 |
0.465 |
|
| 2014 |
Munoz PR, Resende MFR, Huber DA, Quesada T, Resende MDV, Neale DB, Wegrzyn JL, Kirst M, Peter GF. Genomic relationship matrix for correcting pedigree errors in breeding populations: Impact on genetic parameters and genomic selection accuracy Crop Science. 54: 1115-1123. DOI: 10.2135/Cropsci2012.12.0673 |
0.421 |
|
| 2013 |
Eckert AJ, Bower AD, Jermstad KD, Wegrzyn JL, Knaus BJ, Syring JV, Neale DB. Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines (Pinus subgenus Strobus). Molecular Ecology. 22: 5635-50. PMID 24134614 DOI: 10.1111/Mec.12514 |
0.426 |
|
| 2013 |
Eckert AJ, Wegrzyn JL, Liechty JD, Lee JM, Cumbie WP, Davis JM, Goldfarb B, Loopstra CA, Palle SR, Quesada T, Langley CH, Neale DB. The evolutionary genetics of the genes underlying phenotypic associations for loblolly pine (Pinus taeda, Pinaceae). Genetics. 195: 1353-72. PMID 24121773 DOI: 10.1534/Genetics.113.157198 |
0.523 |
|
| 2013 |
Wegrzyn JL, Lin BY, Zieve JJ, Dougherty WM, Martínez-García PJ, Koriabine M, Holtz-Morris A, deJong P, Crepeau M, Langley CH, Puiu D, Salzberg SL, Neale DB, Stevens KA. Insights into the loblolly pine genome: characterization of BAC and fosmid sequences. Plos One. 8: e72439. PMID 24023741 DOI: 10.1371/Journal.Pone.0072439 |
0.413 |
|
| 2013 |
Palle SR, Seeve CM, Eckert AJ, Wegrzyn JL, Neale DB, Loopstra CA. Association of loblolly pine xylem development gene expression with single-nucleotide polymorphisms. Tree Physiology. 33: 763-74. PMID 23933831 DOI: 10.1093/Treephys/Tpt054 |
0.499 |
|
| 2013 |
Neale DB, Langley CH, Salzberg SL, Wegrzyn JL. Open access to tree genomes: the path to a better forest. Genome Biology. 14: 120. PMID 23796049 DOI: 10.1186/Gb-2013-14-6-120 |
0.413 |
|
| 2013 |
Grivet D, Climent J, Zabal-Aguirre M, Neale DB, Vendramin GG, González-Martínez SC. Adaptive evolution of Mediterranean pines. Molecular Phylogenetics and Evolution. 68: 555-66. PMID 23591087 DOI: 10.1016/J.Ympev.2013.03.032 |
0.438 |
|
| 2013 |
Zapata-Valenzuela J, Whetten RW, Neale D, McKeand S, Isik F. Genomic estimated breeding values using genomic relationship matrices in a cloned population of loblolly pine. G3 (Bethesda, Md.). 3: 909-16. PMID 23585458 DOI: 10.1534/G3.113.005975 |
0.455 |
|
| 2013 |
Westbrook JW, Resende MF, Munoz P, Walker AR, Wegrzyn JL, Nelson CD, Neale DB, Kirst M, Huber DA, Gezan SA, Peter GF, Davis JM. Association genetics of oleoresin flow in loblolly pine: discovering genes and predicting phenotype for improved resistance to bark beetles and bioenergy potential. The New Phytologist. 199: 89-100. PMID 23534834 DOI: 10.1111/Nph.12240 |
0.472 |
|
| 2013 |
Vasquez-Gross HA, Yu JJ, Figueroa B, Gessler DD, Neale DB, Wegrzyn JL. CartograTree: connecting tree genomes, phenotypes and environment. Molecular Ecology Resources. 13: 528-37. PMID 23433187 DOI: 10.1111/1755-0998.12067 |
0.368 |
|
| 2013 |
Guerra FP, Wegrzyn JL, Sykes R, Davis MF, Stanton BJ, Neale DB. Association genetics of chemical wood properties in black poplar (Populus nigra). The New Phytologist. 197: 162-76. PMID 23157484 DOI: 10.1111/Nph.12003 |
0.55 |
|
| 2013 |
Martínez-García PJ, Stevens KA, Wegrzyn JL, Liechty J, Crepeau M, Langley CH, Neale DB. Combination of multipoint maximum likelihood (MML) and regression mapping algorithms to construct a high-density genetic linkage map for loblolly pine (Pinus taeda L.) Tree Genetics and Genomes. 9: 1529-1535. DOI: 10.1007/S11295-013-0646-4 |
0.474 |
|
| 2013 |
Sukganah A, Choong CY, Russell J, Neale D, Wickneswari R. Nucleotide sequence analysis of two lignin genes in Acacia auriculiformis × Acacia mangium hybrid for enhancement of wood pulp quality Tree Genetics & Genomes. 9: 1369-1381. DOI: 10.1007/S11295-013-0640-X |
0.535 |
|
| 2013 |
Chhatre VE, Byram TD, Neale DB, Wegrzyn JL, Krutovsky KV. Genetic structure and association mapping of adaptive and selective traits in the east Texas loblolly pine (Pinus taeda L.) breeding populations Tree Genetics and Genomes. 9: 1161-1178. DOI: 10.1007/S11295-013-0624-X |
0.5 |
|
| 2013 |
Sork VL, Aitken SN, Dyer RJ, Eckert AJ, Legendre P, Neale DB. Putting the landscape into the genomics of trees: Approaches for understanding local adaptation and population responses to changing climate Tree Genetics and Genomes. 9: 901-911. DOI: 10.1007/S11295-013-0596-X |
0.435 |
|
| 2013 |
Neale DB, Mosca E, Di Pierro EA. Alpine forest genomics network (AForGeN): A report of the first annual meeting Tree Genetics and Genomes. 9: 879-881. DOI: 10.1007/S11295-012-0591-7 |
0.324 |
|
| 2012 |
Mosca E, Eckert AJ, Liechty JD, Wegrzyn JL, La Porta N, Vendramin GG, Neale DB. Contrasting patterns of nucleotide diversity for four conifers of Alpine European forests. Evolutionary Applications. 5: 762-75. PMID 23144662 DOI: 10.1111/J.1752-4571.2012.00256.X |
0.477 |
|
| 2012 |
Mosca E, Eckert AJ, Di Pierro EA, Rocchini D, La Porta N, Belletti P, Neale DB. The geographical and environmental determinants of genetic diversity for four alpine conifers of the European Alps Molecular Ecology. 21: 5530-5545. PMID 23058000 DOI: 10.1111/Mec.12043 |
0.531 |
|
| 2012 |
Eckert AJ, Shahi H, Datwyler SL, Neale DB. Spatially variable natural selection and the divergence between parapatric subspecies of lodgepole pine (Pinus contorta, Pinaceae). American Journal of Botany. 99: 1323-34. PMID 22837407 DOI: 10.3732/Ajb.1200055 |
0.449 |
|
| 2012 |
Chen J, Källman T, Ma X, Gyllenstrand N, Zaina G, Morgante M, Bousquet J, Eckert A, Wegrzyn J, Neale D, Lagercrantz U, Lascoux M. Disentangling the roles of history and local selection in shaping clinal variation of allele frequencies and gene expression in Norway spruce (Picea abies). Genetics. 191: 865-81. PMID 22542968 DOI: 10.1534/Genetics.112.140749 |
0.529 |
|
| 2012 |
Eckert AJ, Wegrzyn JL, Cumbie WP, Goldfarb B, Huber DA, Tolstikov V, Fiehn O, Neale DB. Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome. The New Phytologist. 193: 890-902. PMID 22129444 DOI: 10.1111/J.1469-8137.2011.03976.X |
0.515 |
|
| 2012 |
Rocchini D, Balkenhol N, Delucchi L, Ghisla A, Hauffe HC, Imre AR, Jordán F, Nagendra H, Neale D, Ricotta C, Varotto C, Vernesi C, Wegmann M, Wohlgemuth T, Neteler M. Spatial algorithms applied to landscape diversity estimate from remote sensing data Developments in Environmental Modelling. 25: 391-411. DOI: 10.1016/B978-0-444-59396-2.00023-7 |
0.314 |
|
| 2012 |
Lorenz WW, Ayyampalayam S, Bordeaux JM, Howe GT, Jermstad KD, Neale DB, Rogers DL, Dean JFD. Conifer DBMagic: A database housing multiple de novo transcriptome assemblies for 12 diverse conifer species Tree Genetics and Genomes. 8: 1477-1485. DOI: 10.1007/S11295-012-0547-Y |
0.409 |
|
| 2012 |
Wegrzyn JL, Main D, Figueroa B, Choi M, Yu J, Neale DB, Jung S, Lee T, Staton M, Zheng P, Ficklin S, Cho I, Peace C, Evans K, Volk G, et al. Erratum to: Uniform standards for genome databases in forest and fruit trees Tree Genetics & Genomes. 8: 941-941. DOI: 10.1007/S11295-012-0541-4 |
0.37 |
|
| 2012 |
Zapata-Valenzuela J, Isik F, Maltecca C, Wegrzyn J, Neale D, McKeand S, Whetten R. SNP markers trace familial linkages in a cloned population of Pinus taeda-prospects for genomic selection Tree Genetics and Genomes. 8: 1307-1318. DOI: 10.1007/S11295-012-0516-5 |
0.535 |
|
| 2012 |
Wegrzyn JL, Main D, Figueroa B, Choi M, Yu J, Neale DB, Jung S, Lee T, Stanton M, Zheng P, Ficklin S, Cho I, Peace C, Evans K, Volk G, et al. Uniform standards for genome databases in forest and fruit trees Tree Genetics and Genomes. 8: 549-557. DOI: 10.1007/S11295-012-0494-7 |
0.44 |
|
| 2011 |
Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Géré P, Boury C, Grivet D, González-MartÃnez SC, ... ... Neale DB, et al. Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine. Bmc Genomics. 12: 368. PMID 21767361 DOI: 10.1186/1471-2164-12-368 |
0.519 |
|
| 2011 |
Cumbie WP, Eckert A, Wegrzyn J, Whetten R, Neale D, Goldfarb B. Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L. Heredity. 107: 105-14. PMID 21245892 DOI: 10.1038/Hdy.2010.168 |
0.506 |
|
| 2011 |
Neale DB, Kremer A. Forest tree genomics: growing resources and applications. Nature Reviews. Genetics. 12: 111-22. PMID 21245829 DOI: 10.1038/Nrg2931 |
0.431 |
|
| 2011 |
Neale D. Genomics-based breeding in forest trees: are we there yet? Bmc Proceedings. 5: 1-2. DOI: 10.1186/1753-6561-5-S7-I4 |
0.571 |
|
| 2011 |
Maloney PE, Vogler DR, Eckert AJ, Jensen CE, Neale DB. Population biology of sugar pine (Pinus lambertiana Dougl.) with reference to historical disturbances in the Lake Tahoe Basin: Implications for restoration Forest Ecology and Management. 262: 770-779. DOI: 10.1016/J.Foreco.2011.05.011 |
0.365 |
|
| 2011 |
Jermstad KD, Eckert AJ, Wegrzyn JL, Delfino-Mix A, Davis DA, Burton DC, Neale DB. Comparative mapping in Pinus: Sugar pine (Pinus lambertiana Dougl.) and loblolly pine (Pinus taeda L.) Tree Genetics and Genomes. 7: 457-468. DOI: 10.1007/S11295-010-0347-1 |
0.45 |
|
| 2010 |
Eckert AJ, Liechty JD, Tearse BR, Pande B, Neale DB. DnaSAM: Software to perform neutrality testing for large datasets with complex null models. Molecular Ecology Resources. 10: 542-5. PMID 21565054 DOI: 10.1111/J.1755-0998.2009.02768.X |
0.392 |
|
| 2010 |
Ersoz ES, Wright MH, González-Martínez SC, Langley CH, Neale DB. Evolution of disease response genes in loblolly pine: insights from candidate genes. Plos One. 5: e14234. PMID 21151911 DOI: 10.1371/Journal.Pone.0014234 |
0.768 |
|
| 2010 |
Wegrzyn JL, Eckert AJ, Choi M, Lee JM, Stanton BJ, Sykes R, Davis MF, Tsai CJ, Neale DB. Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem. The New Phytologist. 188: 515-32. PMID 20831625 DOI: 10.1111/J.1469-8137.2010.03415.X |
0.556 |
|
| 2010 |
Eckert AJ, Bower AD, González-Martínez SC, Wegrzyn JL, Coop G, Neale DB. Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae). Molecular Ecology. 19: 3789-805. PMID 20723060 DOI: 10.1111/J.1365-294X.2010.04698.X |
0.553 |
|
| 2010 |
Quesada T, Gopal V, Cumbie WP, Eckert AJ, Wegrzyn JL, Neale DB, Goldfarb B, Huber DA, Casella G, Davis JM. Association mapping of quantitative disease resistance in a natural population of loblolly pine (Pinus taeda L.). Genetics. 186: 677-86. PMID 20628037 DOI: 10.1534/Genetics.110.117549 |
0.441 |
|
| 2010 |
Kovach A, Wegrzyn JL, Parra G, Holt C, Bruening GE, Loopstra CA, Hartigan J, Yandell M, Langley CH, Korf I, Neale DB. The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. Bmc Genomics. 11: 420. PMID 20609256 DOI: 10.1186/1471-2164-11-420 |
0.427 |
|
| 2010 |
Eckert AJ, van Heerwaarden J, Wegrzyn JL, Nelson CD, Ross-Ibarra J, González-Martínez SC, Neale DB. Patterns of population structure and environmental associations to aridity across the range of loblolly pine (Pinus taeda L., Pinaceae). Genetics. 185: 969-82. PMID 20439779 DOI: 10.1534/Genetics.110.115543 |
0.524 |
|
| 2010 |
Nichols KM, Neale DB. Association genetics, population genomics, and conservation: Revealing the genes underlying adaptation in natural populations of plants and animals Molecular Approaches in Natural Resource Conservation and Management. 123-168. DOI: 10.1017/CBO9780511777592.007 |
0.361 |
|
| 2009 |
Wegrzyn JL, Lee JM, Liechty J, Neale DB. PineSAP--sequence alignment and SNP identification pipeline. Bioinformatics (Oxford, England). 25: 2609-10. PMID 19667082 DOI: 10.1093/Bioinformatics/Btp477 |
0.416 |
|
| 2009 |
Eckert AJ, Wegrzyn JL, Pande B, Jermstad KD, Lee JM, Liechty JD, Tearse BR, Krutovsky KV, Neale DB. Multilocus patterns of nucleotide diversity and divergence reveal positive selection at candidate genes related to cold hardiness in coastal Douglas Fir (Pseudotsuga menziesii var. menziesii). Genetics. 183: 289-98. PMID 19596906 DOI: 10.1534/genetics.109.103895 |
0.308 |
|
| 2009 |
Eckert AJ, Bower AD, Wegrzyn JL, Pande B, Jermstad KD, Krutovsky KV, St Clair JB, Neale DB. Association genetics of coastal Douglas fir (Pseudotsuga menziesii var. menziesii, Pinaceae). I. Cold-hardiness related traits. Genetics. 182: 1289-302. PMID 19487566 DOI: 10.1534/genetics.109.102350 |
0.308 |
|
| 2009 |
Krutovsky KV, St. Clair JB, Saich R, Hipkins VD, Neale DB. Estimation of population structure in coastal Douglas-fir [Pseudotsuga menziesii (Mirb.) Franco var. menziesii] using allozyme and microsatellite markers Tree Genetics and Genomes. 5: 641-658. DOI: 10.1007/s11295-009-0216-y |
0.371 |
|
| 2009 |
Eckert AJ, Pande B, Ersoz ES, Wright MH, Rashbrook VK, Nicolet CM, Neale DB. High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.) Tree Genetics and Genomes. 5: 225-234. DOI: 10.1007/S11295-008-0183-8 |
0.788 |
|
| 2008 |
Wegrzyn JL, Lee JM, Tearse BR, Neale DB. TreeGenes: A forest tree genome database. International Journal of Plant Genomics. 2008: 412875. PMID 18725987 DOI: 10.1155/2008/412875 |
0.416 |
|
| 2008 |
González-MartÃnez SC, Huber D, Ersoz E, Davis JM, Neale DB. Association genetics in Pinus taeda L. II. Carbon isotope discrimination. Heredity. 101: 19-26. PMID 18478029 DOI: 10.1038/Hdy.2008.21 |
0.786 |
|
| 2008 |
Neale DB, Ingvarsson PK. Population, quantitative and comparative genomics of adaptation in forest trees. Current Opinion in Plant Biology. 11: 149-55. PMID 18262830 DOI: 10.1016/J.Pbi.2007.12.004 |
0.555 |
|
| 2008 |
Kaya Z, Skaggs A, Neale DB. Genetic differentiation of Abies equi-trojani (Asch. & Sint. ex Boiss) Mattf. populations from Kazdaǧι, Turkey and the genetic relationship between Turkish firs belonging to the Abies nordmanniana Spach complex Turkish Journal of Botany. 32: 1-10. |
0.322 |
|
| 2007 |
González-Martínez SC, Wheeler NC, Ersoz E, Nelson CD, Neale DB. Association genetics in Pinus taeda L. I. Wood property traits. Genetics. 175: 399-409. PMID 17110498 DOI: 10.1534/Genetics.106.061127 |
0.797 |
|
| 2006 |
González-Martínez SC, Krutovsky KV, Neale DB. Forest-tree population genomics and adaptive evolution. The New Phytologist. 170: 227-38. PMID 16608450 DOI: 10.1111/j.1469-8137.2006.01686.x |
0.443 |
|
| 2006 |
González-Martínez SC, Ersoz E, Brown GR, Wheeler NC, Neale DB. DNA sequence variation and selection of tag single-nucleotide polymorphisms at candidate genes for drought-stress response in Pinus taeda L. Genetics. 172: 1915-26. PMID 16387885 DOI: 10.1534/Genetics.105.047126 |
0.797 |
|
| 2006 |
Krutovsky KV, Elsik CG, Matvienko M, Kozik A, Neale DB. Conserved ortholog sets in forest trees Tree Genetics and Genomes. 3: 61-70. DOI: 10.1007/S11295-006-0052-2 |
0.327 |
|
| 2006 |
Jermstad KD, Sheppard LA, Kinloch BB, Delfino-Mix A, Ersoz ES, Krutovsky KV, Neale DB. Isolation of a full-length CC-NBS-LRR resistance gene analog candidate from sugar pine showing low nucleotide diversity Tree Genetics and Genomes. 2: 76-85. DOI: 10.1007/S11295-005-0029-6 |
0.762 |
|
| 2005 |
Krutovsky KV, Neale DB. Nucleotide diversity and linkage disequilibrium in cold-hardiness- and wood quality-related candidate genes in Douglas fir. Genetics. 171: 2029-41. PMID 16157674 DOI: 10.1534/genetics.105.044420 |
0.311 |
|
| 2005 |
Scotti I, Burelli A, Cattonaro F, Chagné D, Fuller J, Hedley PE, Jansson G, Lalanne C, Madur D, Neale D, Plomion C, Powell W, Troggio M, Morgante M. Analysis of the distribution of marker classes in a genetic linkage map: A case study in Norway spruce (Picea abies karst) Tree Genetics and Genomes. 1: 93-102. DOI: 10.1007/S11295-005-0012-2 |
0.456 |
|
| 2005 |
Wheeler NC, Jermstad KD, Krutovsky K, Aitken SN, Howe GT, Krakowski J, Neale DB. Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir. IV. Cold-hardiness QTL verification and candidate gene mapping Molecular Breeding. 15: 145-156. DOI: 10.1007/S11032-004-3978-9 |
0.394 |
|
| 2005 |
Neale DB, Brown GR. Exploiting natural variation to understand gene function in pine Genome Exploitation: Data Mining the Genome. 133-144. DOI: 10.1007/0-387-24187-6_10 |
0.414 |
|
| 2004 |
Neale DB, Savolainen O. Association genetics of complex traits in conifers Trends in Plant Science. 9: 325-330. PMID 15231277 DOI: 10.1016/J.Tplants.2004.05.006 |
0.419 |
|
| 2004 |
Neale DB, Wheeler NC. Mapping of quantitative trait loci in loblolly pine and Douglas-fir: A summary Forest Genetics. 11: 173-178. |
0.412 |
|
| 2003 |
Gill GP, Brown GR, Neale DB. A sequence mutation in the cinnamyl alcohol dehydrogenase gene associated with altered lignification in loblolly pine. Plant Biotechnology Journal. 1: 253-8. PMID 17163902 DOI: 10.1046/J.1467-7652.2003.00024.X |
0.34 |
|
| 2003 |
Brown GR, Bassoni DL, Gill GP, Fontana JR, Wheeler NC, Megraw RA, Davis MF, Sewell MM, Tuskan GA, Neale DB. Identification of quantitative trait loci influencing wood property traits in loblolly pine (Pinus taeda L.). III. QTL Verification and candidate gene mapping. Genetics. 164: 1537-46. PMID 12930758 |
0.406 |
|
| 2003 |
Komulainen P, Brown GR, Mikkonen M, Karhu A, García-Gil MR, O'Malley D, Lee B, Neale DB, Savolainen O. Comparing EST-based genetic maps between Pinus sylvestris and Pinus taeda. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 667-78. PMID 12827250 DOI: 10.1007/S00122-003-1312-2 |
0.422 |
|
| 2003 |
Zhang Y, Brown G, Whetten R, Loopstra CA, Neale D, Kieliszewski MJ, Sederoff RR. An arabinogalactan protein associated with secondary cell wall formation in differentiating xylem of loblolly pine. Plant Molecular Biology. 52: 91-102. PMID 12825692 DOI: 10.1023/A:1023978210001 |
0.394 |
|
| 2003 |
Howe GT, Aitken SN, Neale DB, Jermstad KD, Wheeler NC, Chen THH. From genotype to phenotype: Unraveling the complexities of cold adaptation in forest trees Canadian Journal of Botany. 81: 1247-1266. DOI: 10.1139/B03-141 |
0.46 |
|
| 2002 |
Sewell MM, Davis MF, Tuskan GA, Wheeler NC, Elam CC, Bassoni DL, Neale DB. Identification of QTLs influencing wood property traits in loblolly pine ( Pinus taeda L.). II. Chemical wood properties. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 104: 214-222. PMID 12582689 DOI: 10.1007/S001220100697 |
0.441 |
|
| 2002 |
Neale DB, Sewell MM, Brown GR. Molecular dissection of the quantitative inheritance of wood property traits in loblolly pine Annals of Forest Science. 59: 595-605. DOI: 10.1051/Forest:2002045 |
0.547 |
|
| 2001 |
Temesgen B, Brown GR, Harry DE, Kinlaw CS, Sewell MM, Neale DB. Genetic mapping of expressed sequence tag polymorphism (ESTP) markers in loblolly pine (Pinus taeda L.) Theoretical and Applied Genetics. 102: 664-675. DOI: 10.1007/s001220051695 |
0.406 |
|
| 2001 |
Jermstad KD, Bassoni DL, Wheeler NC, Anekonda TS, Aitken SN, Adams WT, Neale DB. Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir. II. Spring and fall cold-hardiness Theoretical and Applied Genetics. 102: 1152-1158. DOI: 10.1007/S001220000506 |
0.437 |
|
| 2001 |
Jermstad KD, Bassoni DL, Jech KS, Wheeler NC, Neale DB. Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir. I. Timing of vegetative bud flush Theoretical and Applied Genetics. 102: 1142-1151. DOI: 10.1007/S001220000505 |
0.433 |
|
| 2000 |
Temesgen B, Neale DB, Harry DE. Use of haploid mixtures and heteroduplex analysis enhance polymorphisms revealed by denaturing gradient gel electrophoresis Biotechniques. 28: 114-122. PMID 10649781 DOI: 10.2144/00281St08 |
0.462 |
|
| 2000 |
Anekonda TS, Adams WT, Aitken SN, Neale DB, Jermstad KD, Wheeler NC. Genetics of cold hardiness in a cloned full-sib family of coastal Douglas-fir Canadian Journal of Forest Research. 30: 837-840. DOI: 10.1139/Cjfr-30-5-837 |
0.419 |
|
| 2000 |
Sewell MM, Bassoni DL, Megraw RA, Wheeler NC, Neale DB. Identification of QTLs influencing wood property traits in loblolly pine (Pinus taeda L.). I. Physical wood properties Theoretical and Applied Genetics. 101: 1273-1281. DOI: 10.1007/s001220051607 |
0.33 |
|
| 1999 |
Tuskan G, West D, Bradshaw HD, Neale D, Sewell M, Wheeler N, Megraw B, Jech K, Wiselogel A, Evans R, Elam C, Davis M, Dinus R. Two high-throughput techniques for determining wood properties as part of a molecular genetics analysis of hybrid poplar and loblolly pine Applied Biochemistry and Biotechnology. 77: 55-65. DOI: 10.1385/Abab:77:1-3:55 |
0.381 |
|
| 1999 |
Devey ME, Sewell MM, Uren TL, Neale DB. Comparative mapping in loblolly and radiata pine using RFLP and microsatellite markers Theoretical and Applied Genetics. 99: 656-662. DOI: 10.1007/S001220051281 |
0.431 |
|
| 1999 |
Kaya Z, Sewell MM, Neale DB. Identification of quantitative trait loci influencing annual height-and diameter-increment growth in loblolly pine (Pinus taeda L.) Theoretical and Applied Genetics. 98: 586-592. DOI: 10.1007/s001220051108 |
0.347 |
|
| 1998 |
Kiehne K, Neale DB. DNA pooling strategy for saturation mapping in outbred crosses Molecular Breeding. 4: 179-185. DOI: 10.1023/A:1009657130819 |
0.308 |
|
| 1998 |
Harkins DM, Johnson GN, Skaggs PA, Mix AD, Dupper GE, Devey ME, Kinloch BB, Neale DB. Saturation mapping of a major gene for resistance to white pine blister rust in sugar pine Theoretical and Applied Genetics. 97: 1355-1360. DOI: 10.1007/S001220051029 |
0.431 |
|
| 1998 |
Jermstad KD, Bassoni DL, Kinlaw CS, Neale DB. Partial DNA sequencing of Douglas-fir cDNAs used for RFLP mapping Theoretical and Applied Genetics. 97: 771-776. DOI: 10.1007/s001220050954 |
0.326 |
|
| 1998 |
Jermstad KD, Bassoni DL, Wheeler NC, Neale DB. A sex-averaged genetic linkage map in coastal Douglas-fir (Pseudotsuga menziesii [Mirb.] Franco var 'menziesii') based on RFLP and RAPD markers Theoretical and Applied Genetics. 97: 762-770. DOI: 10.1007/s001220050953 |
0.358 |
|
| 1998 |
Harry DE, Temesgen B, Neale DB. Codominant PCR-based markers for Pinus taeda developed from mapped cDNA clones Theoretical and Applied Genetics. 97: 327-336. DOI: 10.1007/s001220050903 |
0.383 |
|
| 1997 |
Knott SA, Neale DB, Sewell MM, Haley CS. Multiple marker mapping of quantitative trait loci in an outbred pedigree of loblolly pine Theoretical and Applied Genetics. 94: 810-820. DOI: 10.1007/S001220050482 |
0.462 |
|
| 1996 |
Karhu A, Hurme P, Karjalainen M, Karvonen P, Kärkkäinen K, Neale D, Savolainen O. Do molecular markers reflect patterns of differentiation in adaptive traits of conifers? Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 93: 215-21. PMID 24162220 DOI: 10.1007/Bf00225748 |
0.404 |
|
| 1996 |
Göçmen B, Jermstad KD, Neale DB, Kaya Z. Development of random amplified polymorphic DNA markers for genetic mapping in Pacific yew (Taxus brevifolia) Canadian Journal of Forest Research. 26: 497-503. DOI: 10.1139/X26-056 |
0.433 |
|
| 1996 |
Devey ME, Beil JC, Smith DN, Neale DB, Moran GF. A genetic linkage map for Pinus radiata based on RFLP, RAPD, and microsatellite markers Theoretical and Applied Genetics. 92: 673-679. DOI: 10.1007/Bf00226088 |
0.46 |
|
| 1995 |
Hipkins VD, Marshall KA, Neale DB, Rottmann WH, Strauss SH. A mutation hotspot in the chloroplast genome of a conifer (Douglas-fir: Pseudotsuga) is caused by variability in the number of direct repeats derived from a partially duplicated tRNA gene. Current Genetics. 27: 572-9. PMID 7553944 DOI: 10.1007/BF00314450 |
0.336 |
|
| 1995 |
Devey ME, Delfino-Mix A, Kinloch BB, Neale DB. Random amplified polymorphic DNA markers tightly linked to a gene for resistance to white pine blister rust in sugar pine Proceedings of the National Academy of Sciences of the United States of America. 92: 2066-2070. DOI: 10.1073/Pnas.92.6.2066 |
0.464 |
|
| 1995 |
Lehner A, Campbell MA, Wheeler NC, Pöykkö T, Glössl J, Kreike J, Neale DB. Identification of a RAPD marker linked to the pendula gene in Norway spruce (Picea abies (L.) Karst. f. pendula) Theoretical and Applied Genetics. 91: 1092-1094. DOI: 10.1007/Bf00223924 |
0.478 |
|
| 1994 |
Jermstad KD, Reem AM, Henifin JR, Wheeler NC, Neale DB. Inheritance of restriction fragment length polymorphisms and random amplified polymorphic DNAs in coastal Douglas-fir Theoretical and Applied Genetics. 89: 758-766. DOI: 10.1007/Bf00223716 |
0.494 |
|
| 1994 |
Ahuja MR, Devey ME, Groover AT, Jermstad KD, Neale DB. Mapped DNA probes from loblolly pine can be used for restriction fragment length polymorphism mapping in other conifers Theoretical and Applied Genetics. 88: 279-282. DOI: 10.1007/Bf00223632 |
0.387 |
|
| 1994 |
Devey ME, Fiddler TA, Liu BH, Knapp SJ, Neale DB. An RFLP linkage map for loblolly pine based on a three-generation outbred pedigree Theoretical and Applied Genetics. 88: 273-278. DOI: 10.1007/Bf00223631 |
0.377 |
|
| 1992 |
Maroof MA, Zhang Q, Neale DB, Allard RW. Associations between nuclear loci and chloroplast DNA genotypes in wild barley. Genetics. 131: 225-31. PMID 1592238 |
0.342 |
|
| 1992 |
Williams CG, Neale DB. Conifer wood quality and marker-aided selection: a case study Canadian Journal of Forest Research. 22: 1009-1017. DOI: 10.1139/X92-135 |
0.482 |
|
| 1992 |
Neale DB, Devey ME, Jermstad KD, Ahuja MR, Alosi MC, Marshall KA. Use of DNA markers in forest tree improvement research New Forests. 6: 391-407. DOI: 10.1007/Bf00120654 |
0.448 |
|
| 1991 |
Ali IF, Neale DB, Marshall KA. Chloroplast DNA restriction fragment length polymorphism in Sequoia sempervirens D. Don Endl., Pseudotsuga menziesii (Mirb.) Franco, Calocedrus decurrens (Torr.), and Pinus taeda L. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 81: 83-9. PMID 24221163 DOI: 10.1007/Bf00226116 |
0.391 |
|
| 1991 |
Neale DB, Marshall KA, Harry DE. Inheritance of chloroplast and mitochondrial DNA in incense-cedar (Calocedrus decurrens). Canadian Journal of Forest Research. 21: 717-720. DOI: 10.1139/X91-100 |
0.317 |
|
| 1991 |
Neale DB, Kinlaw CS. Molecular approaches to forest tree biology Forest Ecology and Management. 43: 179-180. DOI: 10.1016/0378-1127(91)90126-G |
0.301 |
|
| 1991 |
Devey ME, Jermstad KD, Tauer CG, Neale DB. Inheritance of RFLP loci in a loblolly pine three-generation pedigree Theoretical and Applied Genetics. 83: 238-242. DOI: 10.1007/Bf00226257 |
0.435 |
|
| 1991 |
Neale DB, Kinlaw CS. Forest biotechnology Forest Ecology &Amp; Management. 43: 179-316. |
0.331 |
|
| 1989 |
Neale DB, Sederoff RR. Paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in loblolly pine Theoretical and Applied Genetics. 77: 212-216. DOI: 10.1007/Bf00266189 |
0.381 |
|
| 1986 |
Neale DB, Wheeler NC, Allard RW. Paternal inheritance of chloroplast DNA in Douglas-fir Canadian Journal of Forest Research. 16: 1152-1154. DOI: 10.1139/X86-205 |
0.325 |
|
| 1985 |
Neale DB. Genetic implications of shelterwood regeneration of Douglas-fir in southwest Oregon Forest Science. 31: 995-1005. |
0.318 |
|
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