Year |
Citation |
Score |
2024 |
Chomicz D, Kończak J, Wróbel S, Satława T, Dudzic P, Janusz B, Tarkowski M, Deszyński P, Gawłowski T, Kostyn A, Orłowski M, Klaus T, Schulte L, Martin K, Comeau SR, et al. Benchmarking antibody clustering methods using sequence, structural, and machine learning similarity measures for antibody discovery applications. Frontiers in Molecular Biosciences. 11: 1352508. PMID 38606289 DOI: 10.3389/fmolb.2024.1352508 |
0.339 |
|
2022 |
Thorsteinson N, Comeau SR, Kumar S. Structure-Based Optimization of Antibody-Based Biotherapeutics for Improved Developability: A Practical Guide for Molecular Modelers. Methods in Molecular Biology (Clifton, N.J.). 2552: 219-235. PMID 36346594 DOI: 10.1007/978-1-0716-2609-2_11 |
0.309 |
|
2012 |
Brenke R, Hall DR, Chuang GY, Comeau SR, Bohnuud T, Beglov D, Schueler-Furman O, Vajda S, Kozakov D. Application of asymmetric statistical potentials to antibody-protein docking. Bioinformatics (Oxford, England). 28: 2608-14. PMID 23053206 DOI: 10.1093/Bioinformatics/Bts493 |
0.735 |
|
2010 |
Kozakov D, Hall DR, Beglov D, Brenke R, Comeau SR, Shen Y, Li K, Zheng J, Vakili P, Paschalidis ICh, Vajda S. Achieving reliability and high accuracy in automated protein docking: ClusPro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19. Proteins. 78: 3124-30. PMID 20818657 DOI: 10.1002/Prot.22835 |
0.772 |
|
2008 |
Chuang GY, Kozakov D, Brenke R, Comeau SR, Vajda S. DARS (Decoys As the Reference State) potentials for protein-protein docking. Biophysical Journal. 95: 4217-27. PMID 18676649 DOI: 10.1529/Biophysj.108.135814 |
0.746 |
|
2007 |
Comeau SR, Kozakov D, Brenke R, Shen Y, Beglov D, Vajda S. ClusPro: performance in CAPRI rounds 6-11 and the new server. Proteins. 69: 781-5. PMID 17876812 DOI: 10.1002/Prot.21795 |
0.781 |
|
2007 |
Shen Y, Brenke R, Kozakov D, Comeau SR, Beglov D, Vajda S. Docking with PIPER and refinement with SDU in rounds 6-11 of CAPRI. Proteins. 69: 734-42. PMID 17853451 DOI: 10.1002/Prot.21754 |
0.782 |
|
2006 |
Kozakov D, Brenke R, Comeau SR, Vajda S. PIPER: an FFT-based protein docking program with pairwise potentials. Proteins. 65: 392-406. PMID 16933295 DOI: 10.1002/Prot.21117 |
0.788 |
|
2005 |
Comeau SR, Vajda S, Camacho CJ. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5. Proteins. 60: 239-44. PMID 15981265 DOI: 10.1002/Prot.20564 |
0.696 |
|
2005 |
Comeau SR, Camacho CJ. Predicting oligomeric assemblies: N-mers a primer. Journal of Structural Biology. 150: 233-44. PMID 15890272 DOI: 10.1016/J.Jsb.2005.03.006 |
0.557 |
|
2004 |
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: a fully automated algorithm for protein-protein docking. Nucleic Acids Research. 32: W96-9. PMID 15215358 DOI: 10.1093/Nar/Gkh354 |
0.797 |
|
2004 |
Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics (Oxford, England). 20: 45-50. PMID 14693807 DOI: 10.1093/Bioinformatics/Btg371 |
0.798 |
|
2003 |
Prasad JC, Comeau SR, Vajda S, Camacho CJ. Consensus alignment for reliable framework prediction in homology modeling. Bioinformatics (Oxford, England). 19: 1682-91. PMID 12967965 DOI: 10.1093/Bioinformatics/Btg211 |
0.73 |
|
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