Bruce A. Armitage - Publications

Affiliations: 
1997- Chemistry Carnegie Mellon University, Pittsburgh, PA 
Area:
Biochemistry
Website:
https://www.cmu.edu/chemistry/people/faculty/armitage.html

71 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Canady TD, Berlyoung AS, Martinez JA, Emanuelson C, Telmer CA, Bruchez MP, Armitage BA. Enhanced Hybridization Selectivity Using Structured GammaPNA Probes. Molecules (Basel, Switzerland). 25. PMID 32098111 DOI: 10.3390/molecules25040970  0.4
2018 Tan X, Bruchez MP, Armitage BA. Efficient Cytoplasmic Delivery of Antisense Probes Assisted by Cyclized-Peptide-Mediated Photoinduced Endosomal Escape. Chembiochem : a European Journal of Chemical Biology. PMID 30452106 DOI: 10.1002/cbic.201800709  0.4
2018 Shelke SA, Shao Y, Laski A, Koirala D, Weissman BP, Fuller JR, Tan X, Constantin TP, Waggoner AS, Bruchez MP, Armitage BA, Piccirilli JA. Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif. Nature Communications. 9: 4542. PMID 30382099 DOI: 10.1038/s41467-018-06942-3  0.48
2018 Stensrud KF, Zanotti KJ, Waggoner AS, Armitage BA. Spectral Properties of Fluorogenic Thiophene-Derived Triarylmethane Dyes. Photochemistry and Photobiology. PMID 30339278 DOI: 10.1111/php.13037  0.64
2018 Fouz MF, Dey SK, Mukumoto K, Matyjaszewski K, Armitage BA, Das SR. Accessibility of Densely Localized DNA on Soft Polymer Nanoparticles. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 30148639 DOI: 10.1021/acs.langmuir.8b02038  0.76
2018 Tan X, Bruchez MP, Armitage BA. Closing the Loop: Constraining TAT Peptide by gammaPNA Hairpin for Enhanced Cellular Delivery of Biomolecules. Bioconjugate Chemistry. PMID 30130094 DOI: 10.1021/acs.bioconjchem.8b00495  0.4
2017 Orenstein A, Berlyoung AS, Rastede EE, Pham HH, Fouquerel E, Murphy CT, Leibowitz BJ, Yu J, Srivastava T, Armitage BA, Opresko PL. γPNA FRET Pair Miniprobes for Quantitative Fluorescent In Situ Hybridization to Telomeric DNA in Cells and Tissue. Molecules (Basel, Switzerland). 22. PMID 29207465 DOI: 10.3390/molecules22122117  0.56
2017 Tan X, Constantin TP, Sloane KL, Waggoner AS, Bruchez MP, Armitage BA. Fluoromodules Consisting of a Promiscuous RNA Aptamer and Red or Blue Fluorogenic Cyanine Dyes: Selection, Characterization, and Bioimaging. Journal of the American Chemical Society. PMID 28644615 DOI: 10.1021/jacs.7b04211  0.48
2016 Oyaghire SN, Cherubim CJ, Telmer CA, Martinez JA, Bruchez MP, Armitage BA. RNA G-quadruplex Invasion and Translation Inhibition by Antisense γPNA Oligomers. Biochemistry. PMID 26959335 DOI: 10.1021/acs.biochem.6b00055  0.4
2015 Fouz MF, Mukumoto K, Averick S, Molinar O, McCartney BM, Matyjaszewski K, Armitage BA, Das SR. Bright Fluorescent Nanotags from Bottlebrush Polymers with DNA-Tipped Bristles. Acs Central Science. 1: 431-8. PMID 27163005 DOI: 10.1021/acscentsci.5b00259  0.76
2015 Canady TD, Telmer CA, Oyaghire SN, Armitage BA, Bruchez MP. In Vitro Reversible Translation Control Using γPNA Probes. Journal of the American Chemical Society. 137: 10268-75. PMID 26241615 DOI: 10.1021/jacs.5b05351  1
2015 Rastede EE, Tanha M, Yaron D, Watkins SC, Waggoner AS, Armitage BA. Spectral fine tuning of cyanine dyes: electron donor-acceptor substituted analogues of thiazole orange. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 14: 1703-12. PMID 26171668 DOI: 10.1039/c5pp00117j  0.48
2015 Pham HH, Szent-Gyorgyi C, Brotherton WL, Schmidt BF, Zanotti KJ, Waggoner AS, Armitage BA. Bichromophoric dyes for wavelength shifting of dye-protein fluoromodules. Organic & Biomolecular Chemistry. 13: 3699-710. PMID 25679477 DOI: 10.1039/c4ob02522a  1
2015 Rastede EE, Tanha M, Yaron D, Watkins SC, Waggoner AS, Armitage BA. Spectral fine tuning of cyanine dyes: Electron donor-acceptor substituted analogues of thiazole orange Photochemical and Photobiological Sciences. 14: 1703-1712. DOI: 10.1039/c5pp00117j  1
2014 Tan X, Wang Y, Armitage BA, Bruchez MP. Label-free molecular beacons for biomolecular detection. Analytical Chemistry. 86: 10864-9. PMID 25287123 DOI: 10.1021/ac502986g  1
2014 Pham HH, Murphy CT, Sureshkumar G, Ly DH, Opresko PL, Armitage BA. Cooperative hybridization of γPNA miniprobes to a repeating sequence motif and application to telomere analysis. Organic & Biomolecular Chemistry. 12: 7345-54. PMID 25115693 DOI: 10.1039/c4ob00953c  1
2014 Murphy CT, Gupta A, Armitage BA, Opresko PL. Hybridization of G-quadruplex-forming peptide nucleic acids to guanine-rich DNA templates inhibits DNA polymerase η extension. Biochemistry. 53: 5315-22. PMID 25068499 DOI: 10.1021/bi5006859  1
2014 Cheatle Jarvela AM, Brubaker L, Vedenko A, Gupta A, Armitage BA, Bulyk ML, Hinman VF. Modular evolution of DNA-binding preference of a Tbrain transcription factor provides a mechanism for modifying gene regulatory networks. Molecular Biology and Evolution. 31: 2672-88. PMID 25016582 DOI: 10.1093/molbev/msu213  1
2014 Gallo E, Wienbar S, Snyder AC, Vasilev KV, Armitage BA, Jarvik JW. A single-chain-variable-fragment fluorescence biosensor activates fluorogens from dissimilar chemical families. Protein and Peptide Letters. 21: 1289-94. PMID 24939660  1
2014 Tan X, Dey SK, Telmer C, Zhang X, Armitage BA, Bruchez MP. Aptamers act as activators for the thrombin mediated-hydrolysis of peptide substrates. Chembiochem : a European Journal of Chemical Biology. 15: 205-8. PMID 24339381 DOI: 10.1002/cbic.201300693  1
2013 Gupta A, Lee LL, Roy S, Tanious FA, Wilson WD, Ly DH, Armitage BA. Strand invasion of DNA quadruplexes by PNA: comparison of homologous and complementary hybridization. Chembiochem : a European Journal of Chemical Biology. 14: 1476-84. PMID 23868291 DOI: 10.1002/cbic.201300263  0.64
2013 Goldman JM, Zhang LA, Manna A, Armitage BA, Ly DH, Schneider JW. High affinity γPNA sandwich hybridization assay for rapid detection of short nucleic acid targets with single mismatch discrimination. Biomacromolecules. 14: 2253-61. PMID 23777445 DOI: 10.1021/bm400388a  0.64
2013 Shank NI, Pham HH, Waggoner AS, Armitage BA. Twisted cyanines: a non-planar fluorogenic dye with superior photostability and its use in a protein-based fluoromodule. Journal of the American Chemical Society. 135: 242-51. PMID 23252842 DOI: 10.1021/ja308629w  1
2013 Thomas SM, Sahu B, Rapireddy S, Bahal R, Wheeler SE, Procopio EM, Kim J, Joyce SC, Contrucci S, Wang Y, Chiosea SI, Lathrop KL, Watkins S, Grandis JR, Armitage BA, et al. Antitumor effects of EGFR antisense guanidine-based peptide nucleic acids in cancer models. Acs Chemical Biology. 8: 345-52. PMID 23113581 DOI: 10.1021/cb3003946  1
2012 Senutovitch N, Stanfield RL, Bhattacharyya S, Rule GS, Wilson IA, Armitage BA, Waggoner AS, Berget PB. A variable light domain fluorogen activating protein homodimerizes to activate dimethylindole red. Biochemistry. 51: 2471-85. PMID 22390683 DOI: 10.1021/bi201422g  1
2011 Chowdhury S, Wu Z, Jaquins-Gerstl A, Liu S, Dembska A, Armitage BA, Jin R, Peteanu LA. Wavelength Dependence of the Fluorescence Quenching Efficiency of Nearby Dyes by Gold Nanoclusters and Nanoparticles: The Roles of Spectral Overlap and Particle Size. The Journal of Physical Chemistry. C, Nanomaterials and Interfaces. 115: 20105-20112. PMID 22924090 DOI: 10.1021/jp204836w  0.36
2011 Mohammed HS, Delos Santos JO, Armitage BA. Noncovalent binding and fluorogenic response of cyanine dyes to DNA homoquadruplex and PNA-DNA heteroquadruplex structures. Artificial Dna, Pna & Xna. 2: 43-49. PMID 21912726 DOI: 10.4161/adna.2.2.16339  1
2011 Stadler AL, Delos Santos JO, Stensrud ES, Dembska A, Silva GL, Liu S, Shank NI, Kunttas-Tatli E, Sobers CJ, Gramlich PM, Carell T, Peteanu LA, McCartney BM, Armitage BA. Fluorescent DNA nanotags featuring covalently attached intercalating dyes: synthesis, antibody conjugation, and intracellular imaging. Bioconjugate Chemistry. 22: 1491-502. PMID 21755981 DOI: 10.1021/bc100485f  1
2011 Roy S, Zanotti KJ, Murphy CT, Tanious FA, Wilson WD, Ly DH, Armitage BA. Kinetic discrimination in recognition of DNA quadruplex targets by guanine-rich heteroquadruplex-forming PNA probes. Chemical Communications (Cambridge, England). 47: 8524-6. PMID 21717030 DOI: 10.1039/c1cc12805a  1
2011 Sahu B, Sacui I, Rapireddy S, Zanotti KJ, Bahal R, Armitage BA, Ly DH. Synthesis and characterization of conformationally preorganized, (R)-diethylene glycol-containing γ-peptide nucleic acids with superior hybridization properties and water solubility. The Journal of Organic Chemistry. 76: 5614-27. PMID 21619025 DOI: 10.1021/jo200482d  1
2011 Zanotti KJ, Silva GL, Creeger Y, Robertson KL, Waggoner AS, Berget PB, Armitage BA. Blue fluorescent dye-protein complexes based on fluorogenic cyanine dyes and single chain antibody fragments. Organic & Biomolecular Chemistry. 9: 1012-20. PMID 21180706 DOI: 10.1039/c0ob00444h  1
2011 Stadler AL, Renikuntla BR, Yaron D, Fang AS, Armitage BA. Substituent effects on the assembly of helical cyanine dye aggregates in the minor groove of a DNA template. Langmuir : the Acs Journal of Surfaces and Colloids. 27: 1472-9. PMID 21174432 DOI: 10.1021/la104329c  1
2011 Chowdhury S, Wu Z, Jaquins-Gerstl A, Liu S, Dembska A, Armitage BA, Jin R, Peteanu LA. Wavelength dependence of the fluorescence quenching efficiency of nearby dyes by gold nanoclusters and nanoparticles: The roles of spectral overlap and particle size Journal of Physical Chemistry C. 115: 20105-20112. DOI: 10.1021/jp204836w  1
2010 Damerla RR, Knickelbein KE, Kepchia D, Jackson A, Armitage BA, Eckert KA, Opresko PL. Telomeric repeat mutagenicity in human somatic cells is modulated by repeat orientation and G-quadruplex stability. Dna Repair. 9: 1119-29. PMID 20800555 DOI: 10.1016/j.dnarep.2010.07.014  1
2009 Lusvarghi S, Murphy CT, Roy S, Tanious FA, Sacui I, Wilson WD, Ly DH, Armitage BA. Loop and backbone modifications of peptide nucleic acid improve g-quadruplex binding selectivity. Journal of the American Chemical Society. 131: 18415-24. PMID 19947597 DOI: 10.1021/ja907250j  1
2009 Shank NI, Zanotti KJ, Lanni F, Berget PB, Armitage BA. Enhanced photostability of genetically encodable fluoromodules based on fluorogenic cyanine dyes and a promiscuous protein partner. Journal of the American Chemical Society. 131: 12960-9. PMID 19737016 DOI: 10.1021/ja9016864  1
2009 Lusvarghi S, Kim JM, Creeger Y, Armitage BA. Refined multivalent display of bacterial spore-binding peptides. Organic & Biomolecular Chemistry. 7: 1815-20. PMID 19590776 DOI: 10.1039/b820013k  1
2008 Ediz V, Lee JL, Armitage BA, Yaron D. Molecular engineering of torsional potentials in fluorogenic dyes via electronic substituent effects. The Journal of Physical Chemistry. A. 112: 9692-701. PMID 18785691 DOI: 10.1021/jp805546s  1
2008 Ozhalici-Unal H, Pow CL, Marks SA, Jesper LD, Silva GL, Shank NI, Jones EW, Burnette JM, Berget PB, Armitage BA. A rainbow of fluoromodules: a promiscuous scFv protein binds to and activates a diverse set of fluorogenic cyanine dyes. Journal of the American Chemical Society. 130: 12620-1. PMID 18761447 DOI: 10.1021/ja805042p  1
2008 Constantin TP, Silva GL, Robertson KL, Hamilton TP, Fague K, Waggoner AS, Armitage BA. Synthesis of new fluorogenic cyanine dyes and incorporation into RNA fluoromodules. Organic Letters. 10: 1561-4. PMID 18338898 DOI: 10.1021/ol702920e  1
2008 Armitage BA, Berget PB. Chemistry. An enlightening structure-function relationship. Science (New York, N.Y.). 319: 1195-6. PMID 18309067 DOI: 10.1126/science.1155093  1
2007 Rapireddy S, He G, Roy S, Armitage BA, Ly DH. Strand invasion of mixed-sequence B-DNA by acridine-linked, gamma-peptide nucleic acid (gamma-PNA). Journal of the American Chemical Society. 129: 15596-600. PMID 18027941 DOI: 10.1021/ja074886j  0.64
2007 Roy S, Tanious FA, Wilson WD, Ly DH, Armitage BA. High-affinity homologous peptide nucleic acid probes for targeting a quadruplex-forming sequence from a MYC promoter element. Biochemistry. 46: 10433-43. PMID 17718513 DOI: 10.1021/bi700854r  0.64
2007 Silva GL, Ediz V, Yaron D, Armitage BA. Experimental and computational investigation of unsymmetrical cyanine dyes: understanding torsionally responsive fluorogenic dyes. Journal of the American Chemical Society. 129: 5710-8. PMID 17411048 DOI: 10.1021/ja070025z  1
2007 Benvin AL, Creeger Y, Fisher GW, Ballou B, Waggoner AS, Armitage BA. Fluorescent DNA nanotags: supramolecular fluorescent labels based on intercalating dye arrays assembled on nanostructured DNA templates. Journal of the American Chemical Society. 129: 2025-34. PMID 17256855 DOI: 10.1021/ja066354t  1
2006 Robertson KL, Yu L, Armitage BA, Lopez AJ, Peteanu LA. Fluorescent PNA probes as hybridization labels for biological RNA Biochemistry. 45: 6066-6074. PMID 16681379 DOI: 10.1021/bi052050s  1
2006 Marin VL, Armitage BA. Hybridization of complementary and homologous peptide nucleic acid oligomers to a guanine quadruplex-forming RNA. Biochemistry. 45: 1745-54. PMID 16460021 DOI: 10.1021/bi051831q  1
2006 Tomlinson A, Frezza B, Kofke M, Wang M, Armitage BA, Yaron D. A structural model for cyanine dyes templated into the minor groove of DNA Chemical Physics. 325: 36-47. DOI: 10.1016/j.chemphys.2005.10.007  1
2005 Hannah KC, Gil RR, Armitage BA. 1H NMR and optical spectroscopic investigation of the sequence-dependent dimerization of a symmetrical cyanine dye in the DNA minor groove. Biochemistry. 44: 15924-9. PMID 16313195 DOI: 10.1021/bi051298e  1
2005 Marin VL, Armitage BA. RNA guanine quadruplex invasion by complementary and homologous PNA probes. Journal of the American Chemical Society. 127: 8032-3. PMID 15926825 DOI: 10.1021/ja051102y  1
2005 Datta B, Bier ME, Roy S, Armitage BA. Quadruplex formation by a guanine-rich PNA oligomer. Journal of the American Chemical Society. 127: 4199-207. PMID 15783201 DOI: 10.1021/ja0446202  1
2005 Dilek I, Madrid M, Singh R, Urrea CP, Armitage BA. Effect of PNA backbone modifications on cyanine dye binding to PNA-DNA duplexes investigated by optical spectroscopy and molecular dynamics simulations. Journal of the American Chemical Society. 127: 3339-45. PMID 15755150 DOI: 10.1021/ja045145a  1
2004 Hannah KC, Armitage BA. DNA-templated assembly of helical cyanine dye aggregates: a supramolecular chain polymerization. Accounts of Chemical Research. 37: 845-53. PMID 15612674 DOI: 10.1021/ar030257c  1
2004 Marin V, Hansen HF, Koch T, Armitage BA. Effect of LNA modifications on small molecule binding to nucleic acids. Journal of Biomolecular Structure & Dynamics. 21: 841-50. PMID 15107006 DOI: 10.1080/07391102.2004.10506974  0.6
2004 Renikuntla BR, Rose HC, Eldo J, Waggoner AS, Armitage BA. Improved photostability and fluorescence properties through polyfluorination of a cyanine dye. Organic Letters. 6: 909-12. PMID 15012062 DOI: 10.1021/ol036081w  1
2004 Marin VL, Roy S, Armitage BA. Recent advances in the development of peptide nucleic acid as a gene-targeted drug. Expert Opinion On Biological Therapy. 4: 337-48. PMID 15006728 DOI: 10.1517/14712598.4.3.337  1
2004 Cao R, Gu Z, Patterson GD, Armitage BA. A recoverable enzymatic microgel based on biomolecular recognition. Journal of the American Chemical Society. 126: 726-7. PMID 14733541 DOI: 10.1021/ja039502d  1
2003 Cao R, Gu Z, Hsu L, Patterson GD, Armitage BA. Synthesis and characterization of thermoreversible biopolymer microgels based on hydrogen bonded nucleobase pairing. Journal of the American Chemical Society. 125: 10250-6. PMID 12926948 DOI: 10.1021/ja035211t  1
2003 Datta B, Schmitt C, Armitage BA. Formation of a PNA2-DNA2 hybrid quadruplex. Journal of the American Chemical Society. 125: 4111-8. PMID 12670232 DOI: 10.1021/ja028323d  1
2003 Kushon SA, Bradford K, Marin V, Suhrada C, Armitage BA, McBranch D, Whitten D. Detection of single nucleotide mismatches via fluorescent polymer superquenching Langmuir. 19: 6456-6464. DOI: 10.1021/la034323v  1
2003 Wang M, Dilek I, Armitage BA. Electrostatic contributions to cyanine dye aggregation on peptide nucleic acid templates Langmuir. 19: 6449-6455. DOI: 10.1021/la0342161  1
2003 Gu Z, Patterson G, Cao R, Armitage B. Self-assembled supramolecular microgels: Fractal structure and aggregation mechanism Journal of Polymer Science, Part B: Polymer Physics. 41: 3037-3046. DOI: 10.1002/polb.10626  1
2002 Wang M, Armitage BA. Colorimetric detection of PNA-DNA hybridization using cyanine dyes. Methods in Molecular Biology (Clifton, N.J.). 208: 131-42. PMID 12229285 DOI: 10.1385/1-59259-290-2:131  1
2002 Garoff RA, Litzinger EA, Connor RE, Fishman I, Armitage BA. Helical aggregation of cyanine dyes on DNA templates: Effect of dye structure on formation of homo- and heteroaggregates Langmuir. 18: 6330-6337. DOI: 10.1021/la025742f  1
2001 Kushon SA, Jordan JP, Seifert JL, Nielsen H, Nielsen PE, Armitage BA. Effect of secondary structure on the thermodynamics and kinetics of PNA hybridization to DNA hairpins. Journal of the American Chemical Society. 123: 10805-13. PMID 11686681 DOI: 10.1021/ja016310e  1
2001 Datta B, Armitage BA. Hybridization of PNA to structured DNA targets: quadruplex invasion and the overhang effect. Journal of the American Chemical Society. 123: 9612-9. PMID 11572682  1
1999 Seifert JL, Connor RE, Kushon SA, Wang M, Armitage BA. Spontaneous assembly of helical cyanine dye aggregates on DNA nanotemplates Journal of the American Chemical Society. 121: 2987-2995. DOI: 10.1021/ja984279j  1
1999 Smith JO, Olson DA, Armitage BA. Molecular recognition of PNA-containing hybrids: Spontaneous assembly of helical cyanine dye aggregates on PNA templates Journal of the American Chemical Society. 121: 2686-2695. DOI: 10.1021/ja9837553  1
1998 Gasper SM, Armitage B, Shui X, Hu GG, Changjun Y, Schuster GB, Williams LD. Three-dimensional structure and reactivity of a photochemical cleavage agent bound to DNA Journal of the American Chemical Society. 120: 12402-12409. DOI: 10.1021/ja981761t  1
1997 Armitage B, Ly D, Koch T, Frydenlund H, Orum H, Batz HG, Schuster GB. Peptide nucleic acid-DNA duplexes: long range hole migration from an internally linked anthraquinone. Proceedings of the National Academy of Sciences of the United States of America. 94: 12320-5. PMID 9356447 DOI: 10.1073/pnas.94.23.12320  1
1994 Armitage B, Yu C, Devadoss C, Schuster GB. Cationic anthraquinone derivatives as catalytic DNA photonucleases: Mechanisms for DNA damage and quinone recycling Journal of the American Chemical Society. 116: 9847-9859. DOI: 10.1021/ja00101a005  1
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