| Year |
Citation |
Score |
| 2015 |
Holm F, Hellqvist E, Mason CN, Ali SA, Delos-Santos N, Barrett CL, Chun HJ, Minden MD, Moore RA, Marra MA, Runza V, Frazer KA, Sadarangani A, Jamieson CH. Reversion to an embryonic alternative splicing program enhances leukemia stem cell self-renewal. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621726 DOI: 10.1182/Blood.V126.23.1227.1227 |
0.316 |
|
| 2011 |
Barrett CL, Cho BK, Palsson BO. Sensitive and accurate identification of protein-DNA binding events in ChIP-chip assays using higher order derivative analysis. Nucleic Acids Research. 39: 1656-65. PMID 21051353 DOI: 10.1093/Nar/Gkq848 |
0.324 |
|
| 2010 |
Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methé BA, Palsson BØ, Lovley DR, Barrett CL. De Novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads. Plos One. 5: e10922. PMID 20544019 DOI: 10.1371/Journal.Pone.0010922 |
0.348 |
|
| 2009 |
Cho BK, Zengler K, Qiu Y, Park YS, Knight EM, Barrett CL, Gao Y, Palsson BØ. The transcription unit architecture of the Escherichia coli genome. Nature Biotechnology. 27: 1043-9. PMID 19881496 DOI: 10.1038/Nbt.1582 |
0.304 |
|
| 2008 |
Cho BK, Barrett CL, Knight EM, Park YS, Palsson BØ. Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 105: 19462-7. PMID 19052235 DOI: 10.1073/Pnas.0807227105 |
0.341 |
|
| 2008 |
Katzman S, Barrett C, Thiltgen G, Karchin R, Karplus K. PREDICT-2ND: a tool for generalized protein local structure prediction. Bioinformatics (Oxford, England). 24: 2453-9. PMID 18757875 DOI: 10.1093/Bioinformatics/Btn438 |
0.637 |
|
| 2006 |
Barrett CL, Palsson BO. Iterative reconstruction of transcriptional regulatory networks: an algorithmic approach. Plos Computational Biology. 2: e52. PMID 16710450 DOI: 10.1371/Journal.Pcbi.0020052 |
0.32 |
|
| 2005 |
Barrett CL, Herring CD, Reed JL, Palsson BO. The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. Proceedings of the National Academy of Sciences of the United States of America. 102: 19103-8. PMID 16357206 DOI: 10.1073/Pnas.0505231102 |
0.328 |
|
| 2001 |
Karplus K, Karchin R, Barrett C, Tu S, Cline M, Diekhans M, Grate L, Casper J, Hughey R. What is the value added by human intervention in protein structure prediction? Proteins. 86-91. PMID 11835485 DOI: 10.1002/Prot.10021 |
0.737 |
|
| 1999 |
Karplus K, Barrett C, Cline M, Diekhans M, Grate L, Hughey R. Predicting protein structure using only sequence information Proteins. 37: 121-125. DOI: 10.1002/(Sici)1097-0134(1999)37:3+<121::Aid-Prot16>3.0.Co;2-Q |
0.727 |
|
| 1998 |
Karplus K, Barrett C, Hughey R. Hidden Markov models for detecting remote protein homologies Bioinformatics. 14: 846-856. PMID 9927713 DOI: 10.1093/Bioinformatics/14.10.846 |
0.704 |
|
| 1998 |
Park J, Karplus K, Barrett C, Hughey R, Haussler D, Hubbard T, Chothia C. Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods Journal of Molecular Biology. 284: 1201-1210. PMID 9837738 DOI: 10.1006/Jmbi.1998.2221 |
0.691 |
|
| 1997 |
Barrett C, Hughey R, Karplus K. Scoring hidden Markov models Computer Applications in the Biosciences. 13: 191-199. PMID 9146967 DOI: 10.1093/Bioinformatics/13.2.191 |
0.663 |
|
| 1997 |
Karplus K, Sjolander K, Barrett C, Cline M, Haussler D, Hughey R, Holm L. Predicting Protein Structure Using Hidden Markov Models Proteins. 29: 134-139. DOI: 10.1002/(Sici)1097-0134(1997)1+<134::Aid-Prot18>3.0.Co;2-P |
0.745 |
|
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