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Crystal N. Marconett, Ph.D. - Publications

Affiliations: 
2009 Molecular & Cell Biology University of California, Berkeley, Berkeley, CA, United States 
Area:
Molecular Biology, Cell Biology, Toxicology, Oncology
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Yang M, Shulkin N, Gonzalez E, Castillo J, Yan C, Zhang K, Arvanitis L, Borok Z, Wallace WD, Raz D, Torres ETR, Marconett CN. Cell of origin alters myeloid-mediated immunosuppression in lung adenocarcinoma. Biorxiv : the Preprint Server For Biology. PMID 38948812 DOI: 10.1101/2024.06.19.599651  0.339
2023 Yang M, Shen H, Flodby P, Koss MD, Bassiouni R, Liu Y, Jashashvili T, Neely A, Ogbolu E, Castillo J, Stueve TR, Mullen DJ, Ryan AL, Carpten J, Castaldi A, ... ... Marconett CN, et al. Alveolar type I cells can give rise to KRAS-induced lung adenocarcinoma. Cell Reports. 42: 113286. PMID 37995179 DOI: 10.1016/j.celrep.2023.113286  0.785
2023 Shen H, Chen W, Liu Y, Castaldi A, Castillo J, Horie M, Flodby P, Sundar S, Li C, Ji Y, Minoo P, Marconett CN, Zhou B, Borok Z. GRAMD2 alveolar type I cell plasticity facilitates cell state transitions in organoid culture. Biorxiv : the Preprint Server For Biology. PMID 37905051 DOI: 10.1101/2023.10.17.560801  0.389
2023 Neely AM, Yang M, Marconett CN. CLOCK'ing differences in DNA methylation signatures to understand the molecular etiology of lung cancer. Translational Lung Cancer Research. 12: 1338-1341. PMID 37425400 DOI: 10.21037/tlcr-23-65  0.321
2022 Zhong Q, Liu Y, Correa MR, Marconett CN, Minoo P, Li C, Ann DK, Zhou B, Borok Z. FOXO1 Couples KGF and PI-3K/AKT Signaling to NKX2.1-Regulated Differentiation of Alveolar Epithelial Cells. Cells. 11. PMID 35406686 DOI: 10.3390/cells11071122  0.4
2022 Tran E, Shi T, Li X, Chowdhury AY, Jiang D, Liu Y, Wang H, Yan C, Wallace WD, Lu R, Ryan AL, Marconett CN, Zhou B, Borok Z, Offringa IA. Development of human alveolar epithelial cell models to study distal lung biology and disease. Iscience. 25: 103780. PMID 35169685 DOI: 10.1016/j.isci.2022.103780  0.36
2021 Johnson C, Mullen DJ, Selamat SA, Campan M, Offringa IA, Marconett CN. The Sulfotransferase Is Epigenetically Activated and Transcriptionally Induced by Tobacco Exposure and Is Associated with Patient Outcome in Lung Adenocarcinoma. International Journal of Environmental Research and Public Health. 19. PMID 35010676 DOI: 10.3390/ijerph19010416  0.415
2021 Pierre LS, Marconett CN. Beyond the transcription factor: the under-studied role of epigenomics in lung differentiation. Epigenomics. PMID 34664989 DOI: 10.2217/epi-2021-0348  0.353
2021 Mather RL, Parolia A, Carson SE, Venalainen E, Roig-Carles D, Jaber M, Chu SC, Alborelli I, Wu R, Lin D, Nabavi N, Jachetti E, Colombo MP, Xue H, Pucci P, ... ... Marconett C, et al. The evolutionarily conserved long non-coding RNA LINC00261 drives neuroendocrine prostate cancer proliferation and metastasis via distinct nuclear and cytoplasmic mechanisms. Molecular Oncology. PMID 33793068 DOI: 10.1002/1878-0261.12954  0.304
2020 Horie M, Castaldi A, Sunohara M, Wang H, Ji Y, Liu Y, Li F, Wilkinson TA, Hung L, Shen H, Kage H, Offringa IA, Marconett CN, Flodby P, Zhou B, et al. Integrated Single-Cell RNA-Sequencing Analysis of Aquaporin 5-Expressing Mouse Lung Epithelial Cells Identifies GPRC5A as a Novel Validated Type I Cell Surface Marker. Cells. 9. PMID 33187367 DOI: 10.3390/cells9112460  0.392
2020 Mullen DJ, Yan C, Kang DS, Zhou B, Borok Z, Marconett CN, Farnham PJ, Offringa IA, Rhie SK. TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma. Plos Genetics. 16: e1009023. PMID 32925947 DOI: 10.1371/Journal.Pgen.1009023  0.538
2020 Castaldi A, Horie M, Rieger ME, Dubourd M, Sunohara M, Pandit K, Zhou B, Offringa IA, Marconett CN, Borok Z. Genome-wide integration of microRNA and transcriptomic profiles of differentiating human alveolar epithelial cells. American Journal of Physiology. Lung Cellular and Molecular Physiology. PMID 32432919 DOI: 10.1152/Ajplung.00519.2019  0.347
2020 Mullen DJ, Yan C, Kang DS, Zhou B, Borok Z, Marconett CN, Farnham PJ, Offringa IA, Rhie SK. Abstract 3584: CENPA, MYBL2, and FOXM1 are identified as key transcriptional regulators in lung adenocarcinoma using TENET 2.0 Cancer Research. 80: 3584-3584. DOI: 10.1158/1538-7445.Am2020-3584  0.544
2020 Tran E, Shi T, Liu X, Wang H, Marconett C, Zhou B, Borok Z, Offringa I. A18 Culture of Immortalized Human Alveolar Epithelial Cells in 2D and 3D to Model Lung Adenocarcinoma Progression in Vitro Journal of Thoracic Oncology. 15: S18. DOI: 10.1016/J.Jtho.2019.12.047  0.374
2019 Wong JYY, Zhang H, Hsiung CA, Shiraishi K, Yu K, Matsuo K, Wong MP, Hong YC, Wang J, Seow WJ, Wang Z, Song M, Kim HN, Chang IS, Chatterjee N, ... ... Marconett CN, et al. Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women. Genomics. PMID 31306748 DOI: 10.1016/J.Ygeno.2019.07.008  0.426
2019 Shahabi S, Kumaran V, Castillo J, Cong Z, Nandagopal G, Mullen DJ, Alvarado A, Ramos Correa M, Saizan A, Goel R, Bhat A, Lynch SK, Zhou B, Borok Z, Marconett CN. LINC00261 is an epigenetically-regulated tumor suppressor that is essential for activation of the DNA damage response. Cancer Research. PMID 30796052 DOI: 10.1158/0008-5472.Can-18-2034  0.541
2018 Luo J, Chimge NO, Zhou B, Flodby P, Castaldi A, Firth AL, Liu Y, Wang H, Yang C, Marconett CN, Crandall ED, Offringa IA, Frenkel B, Borok Z. CLDN18.1 attenuates malignancy and related signaling pathways of lung adenocarcinoma in vivo and in vitro. International Journal of Cancer. PMID 30325015 DOI: 10.1002/Ijc.31734  0.518
2018 Yang C, Stueve TR, Yan C, Rhie SK, Mullen DJ, Luo J, Zhou B, Borok Z, Marconett CN, Offringa IA. Positional integration of lung adenocarcinoma susceptibility loci with primary human alveolar epithelial cell epigenomes. Epigenomics. PMID 30212242 DOI: 10.2217/Epi-2018-0003  0.778
2018 Zhou B, Flodby P, Luo J, Castillo DR, Liu Y, Yu FX, McConnell A, Varghese B, Li G, Chimge NO, Sunohara M, Koss MN, Elatre W, Conti P, Liebler JM, ... ... Marconett CN, et al. Claudin-18-mediated YAP activity regulates lung stem and progenitor cell homeostasis and tumorigenesis. The Journal of Clinical Investigation. PMID 29400695 DOI: 10.1172/Jci90429  0.538
2018 Stueve TR, Yang C, Marconett CN, Yan C, Zhou B, Borok Z, Laird-Offringa IA. Abstract A37: Tobacco smoke increases lung adenocarcinoma risk by downregulating TGF-beta and AhR-regulated focal adhesion proteins involved in injury resolution Clinical Cancer Research. 24. DOI: 10.1158/1557-3265.Aacriaslc18-A37  0.786
2018 Castillo J, Shahabi S, Kumaran V, Marconett C. Abstract A06: LINC00261 acts as a tumor suppressor in lung adenocarcinoma Clinical Cancer Research. 24. DOI: 10.1158/1557-3265.Aacriaslc18-A06  0.497
2017 Castillo J, Stueve TR, Marconett CN. Intersecting transcriptomic profiling technologies and long non-coding RNA function in lung adenocarcinoma: discovery, mechanisms, and therapeutic applications. Oncotarget. 8: 81538-81557. PMID 29113413 DOI: 10.18632/Oncotarget.18432  0.778
2017 Stueve TR, Li WQ, Shi J, Marconett CN, Zhang T, Yang C, Mullen D, Yan C, Wheeler W, Hua X, Zhou B, Borok Z, Caporaso NE, Pesatori AC, Duan J, et al. Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers. Human Molecular Genetics. 26: 3014-3027. PMID 28854564 DOI: 10.1093/Hmg/Ddx188  0.782
2017 Castillo J, Stueve TR, Marconett CN. Intersecting transcriptomic profiling technologies and long non-coding RNA function in lung adenocarcinoma: discovery, mechanisms, and therapeutic applications. Oncotarget. PMID 28645111 DOI: 10.18632/oncotarget.18432  0.778
2016 Seow WJ, Matsuo K, Hsiung CA, Shiraishi K, Song M, Kim HN, Wong MP, Hong YC, Dean Hosgood H, Wang Z, Chang IS, Wang JC, Chatterjee N, Tucker M, Wei H, ... ... Marconett CN, et al. Association between GWAS-identified lung adenocarcinoma susceptibility loci and EGFR mutations in never-smoking Asian women, and comparison with findings from Western populations. Human Molecular Genetics. PMID 28025329 DOI: 10.1093/Hmg/Ddw414  0.391
2016 Shi J, Hua X, Zhu B, Ravichandran S, Wang M, Nguyen C, Brodie SA, Palleschi A, Alloisio M, Pariscenti G, Jones K, Zhou W, Bouk AJ, Boland J, Hicks B, ... ... Marconett C, et al. Somatic Genomics and Clinical Features of Lung Adenocarcinoma: A Retrospective Study. Plos Medicine. 13: e1002162. PMID 27923066 DOI: 10.1371/Journal.Pmed.1002162  0.451
2016 Marconett CN, Zhou B, Sunohara M, Pouldar TM, Wang H, Liu Y, Rieger ME, Tran E, Flodby P, Siegmund KD, Crandall ED, Laird-Offringa IA, Borok Z. Cross-species Transcriptome Profiling Identifies New Alveolar Epithelial Type I Cell-specific Genes. American Journal of Respiratory Cell and Molecular Biology. PMID 27749084 DOI: 10.1165/Rcmb.2016-0071Oc  0.5
2016 Zuber V, Marconett CN, Shi J, Hua X, Wheeler W, Yang C, Song L, Dale AM, Laplana M, Risch A, Witoelar A, Thompson WK, Schork AJ, Bettella F, Wang Y, et al. Pleiotropic Analysis of Lung Cancer and Blood Triglycerides. Journal of the National Cancer Institute. 108. PMID 27565901 DOI: 10.1093/Jnci/Djw167  0.447
2016 Stueve TR, Marconett CN, Zhou B, Borok Z, Laird-Offringa IA. The importance of detailed epigenomic profiling of different cell types within organs. Epigenomics. PMID 27305639 DOI: 10.2217/Epi-2016-0005  0.768
2016 Flodby P, Li C, Liu Y, Wang H, Marconett CN, Laird-Offringa IA, Minoo P, Lee AS, Zhou B. GRP78 Regulates ER Homeostasis and Distal Epithelial Cell Survival During Lung Development. American Journal of Respiratory Cell and Molecular Biology. PMID 26816051 DOI: 10.1165/Rcmb.2015-0327Oc  0.461
2016 Yang C, Stueve TR, Marconett CN, Rhie SK, Luo J, Zhou B, Borok Z, Laird-Offringa IA. Functional lung adenocarcinoma risk SNPs identified through positional integration with human alveolar epithelial cell epigenomes Journal of Thoracic Oncology. 11: S46. DOI: 10.1016/J.Jtho.2015.12.076  0.78
2015 Liebler JM, Marconett CN, Juul N, Wang H, Liu Y, Flodby P, Laird-Offringa IA, Minoo P, Zhou B. Combinations of differentiation markers distinguish subpopulations of alveolar epithelial cells in adult lung. American Journal of Physiology. Lung Cellular and Molecular Physiology. ajplung.00337.2015. PMID 26545903 DOI: 10.1152/Ajplung.00337.2015  0.492
2014 Marconett CN, Zhou B, Siegmund KD, Borok Z, Laird-Offringa IA. Transcriptomic Profiling of Primary Alveolar Epithelial Cell Differentiation in Human and Rat. Genomics Data. 2: 105-109. PMID 25343132 DOI: 10.1016/J.Gdata.2014.05.011  0.473
2014 Kage H, Flodby P, Gao D, Kim YH, Marconett CN, DeMaio L, Kim KJ, Crandall ED, Borok Z. Claudin 4 knockout mice: normal physiological phenotype with increased susceptibility to lung injury. American Journal of Physiology. Lung Cellular and Molecular Physiology. 307: L524-36. PMID 25106430 DOI: 10.1152/Ajplung.00077.2014  0.415
2014 Shi J, Marconett CN, Duan J, Hyland PL, Li P, Wang Z, Wheeler W, Zhou B, Campan M, Lee DS, Huang J, Zhou W, Triche T, Amundadottir L, Warner A, et al. Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue. Nature Communications. 5: 3365. PMID 24572595 DOI: 10.1038/Ncomms4365  0.459
2014 Shi J, Marconett C, Duan J, Hyland P, Li P, Wang Z, Wheeler W, Campan M, Huang J, Zhou W, Triche T, Amundadottir L, Hutchinson A, Chen P, Zhou B, et al. Abstract 287: Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue Cancer Research. 74: 287-287. DOI: 10.1158/1538-7445.Am2014-287  0.469
2013 Tam KW, Zhang W, Soh J, Stastny V, Chen M, Sun H, Thu K, Rios JJ, Yang C, Marconett CN, Selamat SA, Laird-Offringa IA, Taguchi A, Hanash S, Shames D, et al. CDKN2A/p16 inactivation mechanisms and their relationship to smoke exposure and molecular features in non-small-cell lung cancer. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. 8: 1378-88. PMID 24077454 DOI: 10.1097/Jto.0B013E3182A46C0C  0.394
2013 Marconett CN, Zhou B, Rieger ME, Selamat SA, Dubourd M, Fang X, Lynch SK, Stueve TR, Siegmund KD, Berman BP, Borok Z, Laird-Offringa IA. Integrated transcriptomic and epigenomic analysis of primary human lung epithelial cell differentiation. Plos Genetics. 9: e1003513. PMID 23818859 DOI: 10.1371/Journal.Pgen.1003513  0.777
2012 Marconett CN, Singhal AK, Sundar SN, Firestone GL. Indole-3-carbinol disrupts estrogen receptor-alpha dependent expression of insulin-like growth factor-1 receptor and insulin receptor substrate-1 and proliferation of human breast cancer cells. Molecular and Cellular Endocrinology. 363: 74-84. PMID 22835548 DOI: 10.1016/J.Mce.2012.07.008  0.642
2011 Marconett CN, Sundar SN, Tseng M, Tin AS, Tran KQ, Mahuron KM, Bjeldanes LF, Firestone GL. Indole-3-carbinol downregulation of telomerase gene expression requires the inhibition of estrogen receptor-alpha and Sp1 transcription factor interactions within the hTERT promoter and mediates the G1 cell cycle arrest of human breast cancer cells. Carcinogenesis. 32: 1315-23. PMID 21693539 DOI: 10.1093/Carcin/Bgr116  0.772
2010 Marconett CN, Morgenstern TJ, San Roman AK, Sundar SN, Singhal AK, Firestone GL. BZL101, a phytochemical extract from the Scutellaria barbata plant, disrupts proliferation of human breast and prostate cancer cells through distinct mechanisms dependent on the cancer cell phenotype. Cancer Biology & Therapy. 10: 397-405. PMID 20574166 DOI: 10.4161/Cbt.10.4.12424  0.65
2010 Nguyen HH, Lavrenov SN, Sundar SN, Nguyen DH, Tseng M, Marconett CN, Kung J, Staub RE, Preobrazhenskaya MN, Bjeldanes LF, Firestone GL. 1-Benzyl-indole-3-carbinol is a novel indole-3-carbinol derivative with significantly enhanced potency of anti-proliferative and anti-estrogenic properties in human breast cancer cells. Chemico-Biological Interactions. 186: 255-66. PMID 20570586 DOI: 10.1016/J.Cbi.2010.05.015  0.637
2010 Marconett CN, Sundar SN, Poindexter KM, Stueve TR, Bjeldanes LF, Firestone GL. Indole-3-carbinol triggers aryl hydrocarbon receptor-dependent estrogen receptor (ER)alpha protein degradation in breast cancer cells disrupting an ERalpha-GATA3 transcriptional cross-regulatory loop. Molecular Biology of the Cell. 21: 1166-77. PMID 20130088 DOI: 10.1091/Mbc.E09-08-0689  0.748
2008 Sundar SN, Marconett CN, Doan VB, Willoughby JA, Firestone GL. Artemisinin selectively decreases functional levels of estrogen receptor-alpha and ablates estrogen-induced proliferation in human breast cancer cells. Carcinogenesis. 29: 2252-8. PMID 18784357 DOI: 10.1093/Carcin/Bgn214  0.761
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