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Kathryn A. Thomasson - Publications

Affiliations: 
The University of North Dakota, Grand Forks, ND, United States 
Area:
Physical Chemistry
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Jungong A, Nori R, Uporov I, Ngassa FN, Austhof E, Holt E, Thomasson KA. Improving far-UV CD Prediction with the Dipole Interaction Model Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.1779  0.698
2015 Uporov IV, Forlemu NY, Nori R, Aleksandrov T, Sango BA, Mbote YE, Pothuganti S, Thomasson KA. Introducing DInaMo: A Package for Calculating Protein Circular Dichroism Using Classical Electromagnetic Theory. International Journal of Molecular Sciences. 16: 21237-76. PMID 26370961 DOI: 10.1016/J.Bpj.2012.11.1299  0.764
2015 Jungong AC, Soukup J, Aleksandrov T, Nori R, Miller E, Uporov I, Thomasson KA. Improving Far UV Circular Dichroism Calculations of Peptides and Proteins with the Dipole Interaction Model Biophysical Journal. 108: 621a. DOI: 10.1016/J.Bpj.2014.11.3378  0.327
2014 Aleksandrov T, Uporov IV, Nori R, Thomasson KA. Steered Molecular Dynamics Simulations of NAD Unbinding from GAPDH and LDH Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.3734  0.441
2014 Nori R, Uporov IV, Forlemu NY, Bongfen YE, Aleksandrov T, Thomasson KA. Computing Theoretical Circular Dichroism of Proteins using the Dipole Interaction Model (DINAMO) with a United Atom Approach Biophysical Journal. 106: 613. DOI: 10.1016/J.Bpj.2013.11.3395  0.764
2013 Nori R, Uporov IV, Forlemu NY, Thomasson KA. Computer Simulations of NAD Channeling between GAPDH and LDH Biophysical Journal. 104: 556a. DOI: 10.1016/J.Bpj.2012.11.3084  0.808
2011 Forlemu NY, Njabon EN, Carlson KL, Schmidt ES, Waingeh VF, Thomasson KA. Ionic strength dependence of F-actin and glycolytic enzyme associations: a Brownian dynamics simulations approach. Proteins. 79: 2813-27. PMID 21905108 DOI: 10.1002/Prot.23107  0.723
2010 Schmidt ES, Forlemu NY, Njabon EN, Thomasson KA. BD SIMULATIONS OF THE IONIC STRENGTH DEPENDENCE OF THE INTERACTIONS BETWEEN TRIOSE PHOSPHATE ISOMERASE AND F-ACTIN. Journal of Undergraduate Chemistry Research. 9: 87-96. PMID 24639622  0.763
2009 Forlemu NY, Njabon EN, Thomasson KA. Computer Simulations of Channeling the Coenzyme Nicotinamide Adenine Dinucleotide Between Glycolytic Enzymes Biophysical Journal. 96: 599a. DOI: 10.1016/J.Bpj.2008.12.3133  0.72
2009 Thomasson KA, Forlemu NY. Predictions of Protein Circular Dichroism Calculated by the Dipole Interaction Model and Compared to Synchrotron Radiation Circular Dichroism Experiments Biophysical Journal. 96: 65a. DOI: 10.1016/J.Bpj.2008.12.235  0.77
2007 Lakshman MK, Keeler JC, Ngassa FN, Hilmer JH, Pradhan P, Zajc B, Thomasson KA. Highly diastereoselective synthesis of nucleoside adducts from the carcinogenic benzo[a]pyrene diol epoxide and a computational analysis. Journal of the American Chemical Society. 129: 68-76. PMID 17199284 DOI: 10.1021/Ja063902U  0.686
2007 Forlemu NY, Waingeh VF, Ouporov IV, Lowe SL, Thomasson KA. Theoretical study of interactions between muscle aldolase and F-actin: insight into different species. Biopolymers. 85: 60-71. PMID 17039493 DOI: 10.1002/Bip.20611  0.772
2006 Banerjee S, Evanson J, Harris E, Lowe SL, Thomasson KA, Porter JE. Identification of specific calcitonin-like receptor residues important for calcitonin gene-related peptide high affinity binding. Bmc Pharmacology. 6: 9. PMID 16776831 DOI: 10.1186/1471-2210-6-9  0.357
2006 Carlson KL, Lowe SL, Hoffmann MR, Thomasson KA. Theoretical UV circular dichroism of cyclo(L-Proline-L-Proline). The Journal of Physical Chemistry. A. 110: 1925-33. PMID 16451026 DOI: 10.1021/Jp052924K  0.301
2006 Waingeh VF, Gustafson CD, Kozliak EI, Lowe SL, Knull HR, Thomasson KA. Glycolytic enzyme interactions with yeast and skeletal muscle F-actin. Biophysical Journal. 90: 1371-84. PMID 16326908 DOI: 10.1529/Biophysj.105.070052  0.812
2004 Waingeh VF, Lowe SL, Thomasson KA. Brownian dynamics of interactions between glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mutants and F-actin. Biopolymers. 73: 533-41. PMID 15048777 DOI: 10.1002/Bip.10560  0.82
2004 Hayen A, Schmitt MA, Ngassa FN, Thomasson KA, Gellman SH. Two helical conformations from a single foldamer backbone: "split personality" in short alpha/beta-peptides. Angewandte Chemie (International Ed. in English). 43: 505-10. PMID 14735547 DOI: 10.1002/Anie.200352125  0.687
2003 Lowe SL, Adrian C, Ouporov IV, Waingeh VF, Thomasson KA. Brownian dynamics simulations of glycolytic enzyme subsets with F-actin. Biopolymers. 70: 456-70. PMID 14648757 DOI: 10.1002/Bip.10530  0.824
2003 Lowe SL, Pandey RR, Czlapinski J, Kie-Adams G, Hoffmann MR, Thomasson KA, Pierce KS. Dipole interaction model predicted pi-pi* circular dichroism of cyclo(L-Pro)3 using structures created by semi-empirical, ab initio, and molecular mechanics methods. The Journal of Peptide Research : Official Journal of the American Peptide Society. 61: 189-201. PMID 12605604 DOI: 10.1034/J.1399-3011.2003.00046.X  0.312
2002 Lowe SL, Atkinson DM, Waingeh VF, Thomasson KA. Brownian dynamics of interactions between aldolase mutants and F-actin. Journal of Molecular Recognition : Jmr. 15: 423-31. PMID 12501161 DOI: 10.1002/Jmr.599  0.802
2001 Ouporov IV, Knull HR, Huber A, Thomasson KA. Brownian dynamics simulations of aldolase binding glyceraldehyde 3-phosphate dehydrogenase and the possibility of substrate channeling Biophysical Journal. 80: 2527-2535. PMID 11371431 DOI: 10.1016/S0006-3495(01)76224-8  0.463
2001 Ouporov IV, Knull HR, Lowe SL, Thomasson KA. Interactions of glyceraldehyde-3-phosphate dehydrogenase with G- and F-actin predicted by Brownian dynamics Journal of Molecular Recognition. 14: 29-41. PMID 11180560 DOI: 10.1002/1099-1352(200101/02)14:1<29::Aid-Jmr517>3.0.Co;2-T  0.535
2001 Yang F, Ouporov IV, Fernandes C, Motriuk D, Thomasson KA. Brownian dynamics simulating the ionic-strength dependence of the nonspecific association of 434 Cro repressor binding B-DNA Journal of Physical Chemistry B. 105: 12601-12608. DOI: 10.1021/Jp012122Z  0.315
2000 Ouporov IV, Keith TJ, Knull HR, Thomasson KA. Computer simulations of glycolytic enzyme interactions with F-actin. Journal of Biomolecular Structure & Dynamics. 18: 311-23. PMID 11089651 DOI: 10.1080/07391102.2000.10506668  0.455
1999 Ouporov IV, Knull HR, Thomasson KA. Brownian dynamics simulations of interactions between aldolase and G- or F-actin Biophysical Journal. 76: 17-27. PMID 9876119 DOI: 10.1016/S0006-3495(99)77174-2  0.568
1997 Thomasson KA, Ouporov IV, Baumgartner T, Czlapinski J, Kaldor T, Northrup SH. Free energy of nonspecific binding of cro represser protein to DNA Journal of Physical Chemistry B. 101: 9127-9136. DOI: 10.1021/Jp971924K  0.329
1993 Andrew SM, Thomasson KA, Northrup SH. Simulation of electron-transfer self-exchange in cytochromes c and b5 Journal of the American Chemical Society. 115: 5516-5521. DOI: 10.1021/Ja00066A020  0.315
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