| Year |
Citation |
Score |
| 2024 |
Berv JS, Singhal S, Field DJ, Walker-Hale N, McHugh SW, Shipley JR, Miller ET, Kimball RT, Braun EL, Dornburg A, Parins-Fukuchi CT, Prum RO, Winger BM, Friedman M, Smith SA. Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction. Science Advances. 10: eadp0114. PMID 39083615 DOI: 10.1126/sciadv.adp0114 |
0.605 |
|
| 2024 |
Gosai KR, Zhou L, Liu Y, Braun EL, Kimball RT, Robinson SK, Jiang A, Goodale E. Investigating flock-associated mimicry: examining the evidence for, and drivers of, plumage mimicry in the greater and lesser necklaced laughingthrush. Royal Society Open Science. 11: 230976. PMID 38601036 DOI: 10.1098/rsos.230976 |
0.558 |
|
| 2024 |
Stiller J, Feng S, Chowdhury AA, Rivas-González I, Duchêne DA, Fang Q, Deng Y, Kozlov A, Stamatakis A, Claramunt S, Nguyen JMT, Ho SYW, Faircloth BC, Haag J, Houde P, ... ... Braun EL, et al. Complexity of avian evolution revealed by family-level genomes. Nature. PMID 38560995 DOI: 10.1038/s41586-024-07323-1 |
0.388 |
|
| 2024 |
Mirarab S, Rivas-González I, Feng S, Stiller J, Fang Q, Mai U, Hickey G, Chen G, Brajuka N, Fedrigo O, Formenti G, Wolf JBW, Howe K, Antunes A, Schierup MH, ... ... Braun EL, et al. A region of suppressed recombination misleads neoavian phylogenomics. Proceedings of the National Academy of Sciences of the United States of America. 121: e2319506121. PMID 38557186 DOI: 10.1073/pnas.2319506121 |
0.367 |
|
| 2024 |
Zhao M, Kurtis SM, Humbel EA, Griffith EV, Liu T, Braun EL, Buchholz R, Kimball RT. Bare parts in the Galliformes: the evolution of a multifunctional structure. Royal Society Open Science. 11: 231695. PMID 38204797 DOI: 10.1098/rsos.231695 |
0.506 |
|
| 2023 |
Kimball RT, Braun EL, Liu Y, Zhou L, Goodale E, Zhou W, Robinson SK. Can convergence in mixed-species flocks lead to evolutionary divergence? Evidence for and methods to test this hypothesis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 378: 20220112. PMID 37066651 DOI: 10.1098/rstb.2022.0112 |
0.569 |
|
| 2023 |
Fuxjager MJ, Ryder TB, Moody NM, Alfonso C, Balakrishnan CN, Barske J, Bosholn M, Boyle WA, Braun EL, Chiver I, Dakin R, Day LB, Driver R, Fusani L, Horton BM, et al. Systems biology as a framework to understand the physiological and endocrine bases of behavior and its evolution-From concepts to a case study in birds. Hormones and Behavior. 151: 105340. PMID 36933440 DOI: 10.1016/j.yhbeh.2023.105340 |
0.499 |
|
| 2022 |
Zhou L, Mammides C, Chen Y, Zhou W, Dai W, Braun EL, Kimball RT, Liu Y, Robinson SK, Goodale E. High association strengths are linked to phenotypic similarity, including plumage color and patterns, of participants in mixed-species bird flocks of southwestern China. Current Zoology. 70: 34-44. PMID 38476134 DOI: 10.1093/cz/zoac096 |
0.557 |
|
| 2022 |
Zhao M, Kurtis SM, White ND, Moncrieff AE, Leite RN, Brumfield RT, Braun EL, Kimball RT. Exploring Conflicts in Whole Genome Phylogenetics: A Case Study within Manakins (Aves: Pipridae). Systematic Biology. PMID 36130303 DOI: 10.1093/sysbio/syac062 |
0.666 |
|
| 2022 |
Salter JF, Hosner PA, L E Tsai W, McCormack JE, Braun EL, Kimball RT, Brumfield RT, Faircloth BC. Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae). Molecular Phylogenetics and Evolution. 107559. PMID 35803448 DOI: 10.1016/j.ympev.2022.107559 |
0.599 |
|
| 2022 |
Wang N, Braun EL, Liang B, Cracraft J, Smith SA. Categorical edge-based analyses of phylogenomic data reveal conflicting signals for difficult relationships in the avian tree. Molecular Phylogenetics and Evolution. 107550. PMID 35691570 DOI: 10.1016/j.ympev.2022.107550 |
0.359 |
|
| 2021 |
Hosner PA, Dittmann DL, O'Neill JP, Birks SM, Braun EL, Kimball RT. Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements. Bmc Ecology and Evolution. 21: 209. PMID 34809586 DOI: 10.1186/s12862-021-01935-1 |
0.559 |
|
| 2021 |
White ND, Batz ZA, Braun EL, Braun MJ, Carleton KL, Kimball RT, Swaroop A. A novel exome probe set captures phototransduction genes across birds (Aves) enabling efficient analysis of vision evolution. Molecular Ecology Resources. PMID 34652059 DOI: 10.1111/1755-0998.13496 |
0.625 |
|
| 2021 |
Kimball RT, Guido M, Hosner PA, Braun EL. When good mitochondria go bad: Cyto-nuclear discordance in landfowl (Aves: Galliformes). Gene. 801: 145841. PMID 34274481 DOI: 10.1016/j.gene.2021.145841 |
0.641 |
|
| 2021 |
Formenti G, Rhie A, Balacco J, Haase B, Mountcastle J, Fedrigo O, Brown S, Capodiferro MR, Al-Ajli FO, Ambrosini R, Houde P, Koren S, Oliver K, Smith M, Skelton J, ... ... Braun EL, et al. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications. Genome Biology. 22: 120. PMID 33910595 DOI: 10.1186/s13059-021-02336-9 |
0.358 |
|
| 2021 |
Kimball RT, Hosner PA, Braun EL. A phylogenomic supermatrix of Galliformes (Landfowl) reveals biased branch lengths. Molecular Phylogenetics and Evolution. 107091. PMID 33545275 DOI: 10.1016/j.ympev.2021.107091 |
0.637 |
|
| 2020 |
Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of the Maltese honey bee, (Insecta: Hymenoptera: Apidae). Mitochondrial Dna. Part B, Resources. 5: 877-878. PMID 33366793 DOI: 10.1080/23802359.2020.1717384 |
0.639 |
|
| 2020 |
Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of (Insecta: Hymenoptera: Apidae), the Arabian honey bee. Mitochondrial Dna. Part B, Resources. 5: 875-876. PMID 33366792 DOI: 10.1080/23802359.2020.1717383 |
0.611 |
|
| 2020 |
Leite RN, Kimball RT, Braun EL, Derryberry EP, Hosner PA, Derryberry GE, Anciães M, McKay JS, Aleixo A, Ribas CC, Brumfield RT, Cracraft J. Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness. Molecular Phylogenetics and Evolution. 107013. PMID 33217578 DOI: 10.1016/j.ympev.2020.107013 |
0.614 |
|
| 2020 |
Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, ... ... Braun EL, et al. Dense sampling of bird diversity increases power of comparative genomics. Nature. 587: 252-257. PMID 33177665 DOI: 10.1038/s41586-020-2873-9 |
0.38 |
|
| 2020 |
Ksepka DT, Balanoff AM, Smith NA, Bever GS, Bhullar BS, Bourdon E, Braun EL, Burleigh JG, Clarke JA, Colbert MW, Corfield JR, Degrange FJ, De Pietri VL, Early CM, Field DJ, et al. Tempo and Pattern of Avian Brain Size Evolution. Current Biology : Cb. PMID 32330422 DOI: 10.1016/J.Cub.2020.03.060 |
0.551 |
|
| 2020 |
Pandey A, Braun EL. Phylogenetic Analyses of Sites in Different Protein Structural Environments Result in Distinct Placements of the Metazoan Root. Biology. 9. PMID 32231097 DOI: 10.3390/Biology9040064 |
0.394 |
|
| 2020 |
Houde P, Braun EL, Zhou L. Deep-Time Demographic Inference Suggests Ecological Release as Driver of Neoavian Adaptive Radiation Diversity. 12: 164. DOI: 10.3390/D12040164 |
0.417 |
|
| 2020 |
Tiley GP, Pandey A, Kimball RT, Braun EL, Burleigh JG. Whole genome phylogeny of Gallus: introgression and data-type effects Avian Research. 11. DOI: 10.1186/s40657-020-00194-w |
0.568 |
|
| 2020 |
Boardman L, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. Mitochondrial genome of Apis mellifera anatoliaca (Hymenoptera: Apidae) – the Anatolian honey bee Mitochondrial Dna Part B. 5: 1876-1877. DOI: 10.1080/23802359.2020.1751737 |
0.678 |
|
| 2020 |
Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of the Maltese honey bee, Apis mellifera ruttneri (Insecta: Hymenoptera: Apidae) Mitochondrial Dna Part B. 5: 877-878. DOI: 10.1080/23802359.2020.1717384 |
0.667 |
|
| 2020 |
Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of Apis mellifera jemenitica (Insecta: Hymenoptera: Apidae), the Arabian honey bee Mitochondrial Dna Part B. 5: 875-876. DOI: 10.1080/23802359.2020.1717383 |
0.64 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball R, Braun E, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of the Spanish honey bee, (Insecta: Hymenoptera: Apidae), from Portugal. Mitochondrial Dna. Part B, Resources. 5: 17-18. PMID 33366401 DOI: 10.1080/23802359.2019.1693920 |
0.642 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball R, Braun E, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of the West African honey bee (Insecta: Hymenoptera: Apidae). Mitochondrial Dna. Part B, Resources. 5: 11-12. PMID 33366398 DOI: 10.1080/23802359.2019.1693308 |
0.622 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball R, Braun E, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of (Hymenoptera: Apidae), an Ethiopian honey bee. Mitochondrial Dna. Part B, Resources. 5: 9-10. PMID 33366397 DOI: 10.1080/23802359.2019.1693307 |
0.645 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of the Carniolan honey bee, (Insecta: Hymenoptera: Apidae). Mitochondrial Dna. Part B, Resources. 4: 3288-3290. PMID 33365960 DOI: 10.1080/23802359.2019.1671250 |
0.665 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of (Insecta: Hymenoptera: Apidae), the Malagasy honey bee. Mitochondrial Dna. Part B, Resources. 4: 3286-3287. PMID 33365959 DOI: 10.1080/23802359.2019.1671247 |
0.636 |
|
| 2019 |
Oliveros CH, Field DJ, Ksepka DT, Barker FK, Aleixo A, Andersen MJ, Alström P, Benz BW, Braun EL, Braun MJ, Bravo GA, Brumfield RT, Chesser RT, Claramunt S, Cracraft J, et al. Earth history and the passerine superradiation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30936315 DOI: 10.1073/Pnas.1813206116 |
0.591 |
|
| 2019 |
Kimball RT, Oliveros CH, Wang N, White ND, Barker FK, Field DJ, Ksepka DT, Chesser RT, Moyle RG, Braun MJ, Brumfield RT, Faircloth BC, Smith BT, Braun EL. A Phylogenomic Supertree of Birds Diversity. 11: 109. DOI: 10.3390/D11070109 |
0.697 |
|
| 2019 |
Houde P, Braun EL, Narula N, Minjares U, Mirarab S. Phylogenetic Signal of Indels and the Neoavian Radiation Diversity. 11: 108. DOI: 10.3390/D11070108 |
0.466 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball R, Braun E, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of the Spanish honey bee, Apis mellifera iberiensis (Insecta: Hymenoptera: Apidae), from Portugal Mitochondrial Dna Part B. 5: 17-18. DOI: 10.1080/23802359.2019.1693920 |
0.667 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball R, Braun E, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of the West African honey bee Apis mellifera adansonii (Insecta: Hymenoptera: Apidae) Mitochondrial Dna Part B. 5: 11-12. DOI: 10.1080/23802359.2019.1693308 |
0.647 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball R, Braun E, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of Apis mellifera simensis (Hymenoptera: Apidae), an Ethiopian honey bee Mitochondrial Dna Part B. 5: 9-10. DOI: 10.1080/23802359.2019.1693307 |
0.656 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The mitochondrial genome of the Carniolan honey bee, Apis mellifera carnica (Insecta: Hymenoptera: Apidae) Mitochondrial Dna Part B. 4: 3288-3290. DOI: 10.1080/23802359.2019.1671250 |
0.68 |
|
| 2019 |
Boardman L, Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of Apis mellifera unicolor (Insecta: Hymenoptera: Apidae), the Malagasy honey bee Mitochondrial Dna Part B. 4: 3286-3287. DOI: 10.1080/23802359.2019.1671247 |
0.649 |
|
| 2018 |
Tamashiro RA, White ND, Braun MJ, Faircloth BC, Braun EL, Kimball RT. What are the roles oftaxon sampling and model fit in tests ofcyto-nuclear discordance using avian mitogenomic data? Molecular Phylogenetics and Evolution. PMID 30321694 DOI: 10.1016/J.Ympev.2018.10.008 |
0.65 |
|
| 2018 |
Chen, Braun EL, Forthman M, Kimball RT, Zhang Z. A simple strategy for recovering ultraconserved elements, exons, and introns from low coverage shotgun sequencing of museum specimens: placement of the partridge genus Tropicoperdix within the Galliformes. Molecular Phylogenetics and Evolution. PMID 30201427 DOI: 10.1016/J.Ympev.2018.09.005 |
0.677 |
|
| 2018 |
Liang B, Wang N, Li N, Kimball RT, Braun EL. Comparative genomics reveals a burst of homoplasy-free numt insertions. Molecular Biology and Evolution. PMID 29860531 DOI: 10.1093/Molbev/Msy112 |
0.68 |
|
| 2018 |
Tiley GP, Kimball RT, Braun EL, Burleigh JG. Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution. Bmc Genomics. 19: 336. PMID 29739321 DOI: 10.1186/S12864-018-4711-0 |
0.661 |
|
| 2018 |
Eimanifar A, Kimball RT, Braun EL, Ellis JD. Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa. Scientific Reports. 8: 1333. PMID 29358597 DOI: 10.1038/S41598-018-19759-3 |
0.69 |
|
| 2017 |
Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of Tingek, an Asian honey bee (Insecta: Hymenoptera: Apidae). Mitochondrial Dna. Part B, Resources. 2: 552-553. PMID 33473896 DOI: 10.1080/23802359.2017.1365655 |
0.659 |
|
| 2017 |
Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome and phylogenetic placement of Smith (Insecta: Hymenoptera: Apidae), an Asian, cavity-nesting honey bee. Mitochondrial Dna. Part B, Resources. 2: 249-250. PMID 33473788 DOI: 10.1080/23802359.2017.1318683 |
0.661 |
|
| 2017 |
Ascunce MS, Huguet-Tapia JC, Ortiz-Urquiza A, Keyhani NO, Braun EL, Goss EM. Phylogenomic analysis supports multiple instances of polyphyly in the oomycete peronosporalean lineage. Molecular Phylogenetics and Evolution. PMID 28645766 DOI: 10.1016/J.Ympev.2017.06.013 |
0.462 |
|
| 2017 |
Hosner PA, Tobias JA, Braun EL, Kimball RT. How do seemingly non-vagile clades accomplish trans-marine dispersal? Trait and dispersal evolution in the landfowl (Aves: Galliformes). Proceedings. Biological Sciences. 284. PMID 28469029 DOI: 10.1098/Rspb.2017.0210 |
0.594 |
|
| 2017 |
Feng G, Burleigh JG, Braun EL, Mei W, Barbazuk WB. Evolution of the 3R-MYB Gene Family in Plants. Genome Biology and Evolution. PMID 28444194 DOI: 10.1093/Gbe/Evx056 |
0.303 |
|
| 2017 |
Reddy S, Kimball RT, Pandey A, Hosner PA, Braun MJ, Hackett SJ, Han KL, Harshman J, Huddleston CJ, Kingston S, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Witt CC, ... ... Braun EL, et al. Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling. Systematic Biology. PMID 28369655 DOI: 10.1093/Sysbio/Syx041 |
0.66 |
|
| 2017 |
Wang N, Hosner PA, Liang B, Braun EL, Kimball RT. Historical relationships of three enigmatic phasianid genera (Aves: Galliformes) inferred using phylogenomic and mitogenomic data. Molecular Phylogenetics and Evolution. PMID 28088402 DOI: 10.1016/J.Ympev.2017.01.006 |
0.671 |
|
| 2017 |
Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome of Apis nuluensis Tingek, an Asian honey bee (Insecta: Hymenoptera: Apidae) Mitochondrial Dna Part B. 2: 552-553. DOI: 10.1080/23802359.2017.1365655 |
0.692 |
|
| 2017 |
Eimanifar A, Kimball RT, Braun EL, Fuchs S, Grünewald B, Ellis JD. The complete mitochondrial genome and phylogenetic placement of Apis nigrocincta Smith (Insecta: Hymenoptera: Apidae), an Asian, cavity-nesting honey bee Mitochondrial Dna Part B. 2: 249-250. DOI: 10.1080/23802359.2017.1318683 |
0.694 |
|
| 2016 |
Hosner PA, Braun EL, Kimball RT. Rapid and recent diversification of curassows, guans, and chachalacas (Galliformes: Cracidae) out of Mesoamerica: Phylogeny inferred from mitochondrial, intron, and ultraconserved element sequences. Molecular Phylogenetics and Evolution. 102: 320-330. PMID 27369454 DOI: 10.1016/J.Ympev.2016.06.006 |
0.658 |
|
| 2016 |
Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, ... ... Braun EL, et al. Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication. Current Biology : Cb. PMID 27238284 DOI: 10.1016/J.Cub.2016.04.038 |
0.394 |
|
| 2016 |
Ascunce MS, Huguet-Tapia JC, Braun EL, Ortiz-Urquiza A, Keyhani NO, Goss EM. Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA. Genomics Data. 7: 60-1. PMID 26981361 DOI: 10.1016/J.Gdata.2015.11.019 |
0.417 |
|
| 2016 |
Persons NW, Hosner PA, Meiklejohn KA, Braun EL, Kimball RT. Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences. Molecular Phylogenetics and Evolution. 98: 123-32. PMID 26879712 DOI: 10.1016/J.Ympev.2016.02.003 |
0.679 |
|
| 2016 |
Meiklejohn KA, Faircloth BC, Glenn TC, Kimball RT, Braun EL. Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods. Systematic Biology. PMID 26865273 DOI: 10.1093/Sysbio/Syw014 |
0.67 |
|
| 2016 |
Hosner PA, Faircloth BC, Glenn TC, Braun EL, Kimball RT. Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes). Molecular Biology and Evolution. 33: 1110-25. PMID 26715628 DOI: 10.1093/Molbev/Msv347 |
0.68 |
|
| 2016 |
Wang N, Kimball RT, Braun EL, Liang B, Zhang Z. Ancestral range reconstruction of Galliformes: The effects of topology and taxon sampling Journal of Biogeography. DOI: 10.1111/Jbi.12782 |
0.629 |
|
| 2016 |
Persons NW, Hosner PA, Meiklejohn KA, Braun EL, Kimball RT. Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences Molecular Phylogenetics and Evolution. 98: 123-132. DOI: 10.1016/j.ympev.2016.02.003 |
0.598 |
|
| 2015 |
Cracraft J, Houde P, Ho SY, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MT, Zhang G, Braun EL, Jarvis ED. Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, N.Y.). 349: 1460. PMID 26404820 DOI: 10.1126/Science.Aab1578 |
0.386 |
|
| 2015 |
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, ... ... Braun EL, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/S13742-014-0038-1 |
0.454 |
|
| 2015 |
Burleigh JG, Kimball RT, Braun EL. Building the avian tree of life using a large-scale, sparse supermatrix Molecular Phylogenetics and Evolution. 84: 53-63. PMID 25550149 DOI: 10.1016/J.Ympev.2014.12.003 |
0.672 |
|
| 2015 |
Suh A, Churakov G, Ramakodi MP, Platt RN, Jurka J, Kojima KK, Caballero J, Smit AF, Vliet KA, Hoffmann FG, Brosius J, Green RE, Braun EL, Ray DA, Schmitz J. Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes. Genome Biology and Evolution. 7: 205-17. PMID 25503085 DOI: 10.1093/Gbe/Evu256 |
0.398 |
|
| 2015 |
Hosner PA, Braun EL, Kimball RT. Land connectivity changes and global cooling shaped the colonization history and diversification of New World quail (Aves: Galliformes: Odontophoridae) Journal of Biogeography. DOI: 10.1111/Jbi.12555 |
0.61 |
|
| 2014 |
Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/Science.1254449 |
0.48 |
|
| 2014 |
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, ... ... Braun EL, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451 |
0.513 |
|
| 2014 |
Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, ... ... Braun EL, et al. Comparative genomics reveals insights into avian genome evolution and adaptation. Science (New York, N.Y.). 346: 1311-20. PMID 25504712 DOI: 10.1126/Science.1251385 |
0.511 |
|
| 2014 |
Suh A, Weber CC, Kehlmaier C, Braun EL, Green RE, Fritz U, Ray DA, Ellegren H. Early mesozoic coexistence of amniotes and hepadnaviridae. Plos Genetics. 10: e1004559. PMID 25501991 DOI: 10.1371/Journal.Pgen.1004559 |
0.411 |
|
| 2014 |
Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT. The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach. Proceedings. Biological Sciences / the Royal Society. 281. PMID 25030982 DOI: 10.1098/Rspb.2014.0823 |
0.661 |
|
| 2014 |
Meiklejohn KA, Danielson MJ, Faircloth BC, Glenn TC, Braun EL, Kimball RT. Incongruence among different mitochondrial regions: A case study using complete mitogenomes Molecular Phylogenetics and Evolution. 78: 314-323. PMID 24929245 DOI: 10.1016/J.Ympev.2014.06.003 |
0.665 |
|
| 2014 |
Kimball RT, Braun EL. Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix. Peerj. 2: e361. PMID 24795852 DOI: 10.7717/Peerj.361 |
0.708 |
|
| 2014 |
Kimball RT, Braun EL. Does more sequence data improve estimates of galliformphylogeny? Analyses of a rapid radiation using a complete data matrix Peerj. 2014. DOI: 10.7717/peerj.361 |
0.541 |
|
| 2014 |
Kumar A, Braun E, Kimball R. Adaptive evolution of Cep63-CEP152 centrosome microcephaly ring in association with brain size shift in mammals F1000research. 5. DOI: 10.7490/F1000Research.1096500.1 |
0.74 |
|
| 2014 |
Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT. The evolution of peafowl and other taxa with ocelli (eyespots): A phylogenomic approach Proceedings of the Royal Society B: Biological Sciences. 281. DOI: 10.1098/rspb.2014.0823 |
0.513 |
|
| 2013 |
Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL. Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals. Biology. 2: 419-44. PMID 24832669 DOI: 10.3390/Biology2010419 |
0.816 |
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| 2013 |
Kimball RT, Wang N, Heimer-McGinn V, Ferguson C, Braun EL. Identifying localized biases in large datasets: a case study using the avian tree of life. Molecular Phylogenetics and Evolution. 69: 1021-32. PMID 23791948 DOI: 10.1016/J.Ympev.2013.05.029 |
0.638 |
|
| 2013 |
Wang N, Kimball RT, Braun EL, Liang B, Zhang Z. Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae. Plos One. 8: e64312. PMID 23741315 DOI: 10.1371/Journal.Pone.0064312 |
0.673 |
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| 2013 |
Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28 |
0.481 |
|
| 2013 |
Smith JV, Braun EL, Kimball RT. Ratite nonmonophyly: independent evidence from 40 novel Loci. Systematic Biology. 62: 35-49. PMID 22831877 DOI: 10.1093/Sysbio/Sys067 |
0.666 |
|
| 2012 |
Castoe TA, Braun EL, Bronikowski AM, Cox CL, Rabosky AR, Jason de Koning AP, Dobry J, Fujita MK, Giorgianni MW, Hargreaves A, Henkel CV, Mackessy SP, O'Meally D, Rokyta DR, Secor SM, et al. Report from the first snake genomics and integrative biology meeting. Standards in Genomic Sciences. 7: 150-2. PMID 23451292 DOI: 10.4056/Sigs.3106480 |
0.348 |
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| 2012 |
Chojnowski JL, Braun EL. An unbiased approach to identify genes involved in development in a turtle with temperature-dependent sex determination. Bmc Genomics. 13: 308. PMID 22793670 DOI: 10.1186/1471-2164-13-308 |
0.765 |
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| 2012 |
Ponciano JM, Burleigh JG, Braun EL, Taper ML. Assessing parameter identifiability in phylogenetic models using data cloning. Systematic Biology. 61: 955-72. PMID 22649181 DOI: 10.1093/Sysbio/Sys055 |
0.315 |
|
| 2012 |
St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/Gb-2012-13-1-415 |
0.416 |
|
| 2012 |
Wang N, Braun EL, Kimball RT. Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set. Molecular Biology and Evolution. 29: 737-50. PMID 21940640 DOI: 10.1093/Molbev/Msr230 |
0.663 |
|
| 2011 |
Lim CH, Hamazaki T, Braun EL, Wade J, Terada N. Evolutionary genomics implies a specific function of Ant4 in mammalian and anole lizard male germ cells Plos One. 6. PMID 21858006 DOI: 10.1371/Journal.Pone.0023122 |
0.462 |
|
| 2011 |
Kimball RT, Mary CM, Braun EL. A macroevolutionary perspective on multiple sexual traits in the phasianidae (galliformes). International Journal of Evolutionary Biology. 2011: 423938. PMID 21716735 DOI: 10.4061/2011/423938 |
0.553 |
|
| 2011 |
Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, et al. Homoplastic microinversions and the avian tree of life. Bmc Evolutionary Biology. 11: 141. PMID 21612607 DOI: 10.1186/1471-2148-11-141 |
0.831 |
|
| 2011 |
Feller A, Machemer K, Braun EL, Grotewold E. Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. The Plant Journal : For Cell and Molecular Biology. 66: 94-116. PMID 21443626 DOI: 10.1111/J.1365-313X.2010.04459.X |
0.392 |
|
| 2011 |
Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, et al. Are transposable element insertions homoplasy free?: an examination using the avian tree of life. Systematic Biology. 60: 375-86. PMID 21303823 DOI: 10.1093/Sysbio/Syq100 |
0.759 |
|
| 2010 |
Bonilla AJ, Braun EL, Kimball RT. Comparative molecular evolution and phylogenetic utility of 3'-UTRs and introns in Galliformes. Molecular Phylogenetics and Evolution. 56: 536-42. PMID 20398778 DOI: 10.1016/J.Ympev.2010.04.006 |
0.651 |
|
| 2009 |
Katsu Y, Braun EL, Guillette LJ, Iguchi T. From reptilian phylogenomics to reptilian genomes: analyses of c-Jun and DJ-1 proto-oncogenes. Cytogenetic and Genome Research. 127: 79-93. PMID 20234127 DOI: 10.1159/000297715 |
0.45 |
|
| 2009 |
Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, et al. A well-tested set of primers to amplify regions spread across the avian genome. Molecular Phylogenetics and Evolution. 50: 654-60. PMID 19084073 DOI: 10.1016/J.Ympev.2008.11.018 |
0.778 |
|
| 2008 |
Phillips N, Calhoun S, Moustafa A, Bhattacharya D, Braun EL. GENOMIC INSIGHTS INTO EVOLUTIONARY RELATIONSHIPS AMONG HETEROKONT LINEAGES EMPHASIZING THE PHAEOPHYCEAE(1). Journal of Phycology. 44: 15-8. PMID 27041034 DOI: 10.1111/J.1529-8817.2007.00435.X |
0.493 |
|
| 2008 |
Braun EL, Phillips N. PHYLOGENOMICS AND SECONDARY PLASTIDS: A LOOK BACK AND A LOOK AHEAD(1). Journal of Phycology. 44: 2-6. PMID 27041031 DOI: 10.1111/J.1529-8817.2007.00432.X |
0.47 |
|
| 2008 |
Chojnowski JL, Braun EL. Turtle isochore structure is intermediate between amphibians and other amniotes. Integrative and Comparative Biology. 48: 454-62. PMID 21669806 DOI: 10.1093/Icb/Icn062 |
0.818 |
|
| 2008 |
Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, et al. Phylogenomic evidence for multiple losses of flight in ratite birds. Proceedings of the National Academy of Sciences of the United States of America. 105: 13462-7. PMID 18765814 DOI: 10.1073/Pnas.0803242105 |
0.824 |
|
| 2008 |
Georgelis N, Braun EL, Hannah LC. Duplications and functional divergence of ADP-glucose pyrophosphorylase genes in plants. Bmc Evolutionary Biology. 8: 232. PMID 18700010 DOI: 10.1186/1471-2148-8-232 |
0.322 |
|
| 2008 |
Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, et al. A phylogenomic study of birds reveals their evolutionary history. Science (New York, N.Y.). 320: 1763-8. PMID 18583609 DOI: 10.1126/Science.1157704 |
0.821 |
|
| 2008 |
Chojnowski JL, Kimball RT, Braun EL. Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes. Gene. 410: 89-96. PMID 18191344 DOI: 10.1016/J.Gene.2007.11.016 |
0.826 |
|
| 2008 |
Yuri T, Kimball RT, Braun EL, Braun MJ. Duplication of accelerated evolution and growth hormone gene in passerine birds. Molecular Biology and Evolution. 25: 352-61. PMID 18048401 DOI: 10.1093/Molbev/Msm260 |
0.662 |
|
| 2008 |
Kimball RT, Braun EL. A multigene phylogeny of Galliformes supports a single origin of erectile ability in non-feathered facial traits Journal of Avian Biology. 39: 438-445. DOI: 10.1111/J.0908-8857.2008.04270.X |
0.63 |
|
| 2007 |
Chojnowski JL, Franklin J, Katsu Y, Iguchi T, Guillette LJ, Kimball RT, Braun EL. Patterns of vertebrate isochore evolution revealed by comparison of expressed mammalian, avian, and crocodilian genes. Journal of Molecular Evolution. 65: 259-66. PMID 17674077 DOI: 10.1007/S00239-007-9003-2 |
0.817 |
|
| 2007 |
Sassi SO, Braun EL, Benner SA. The evolution of seminal ribonuclease: pseudogene reactivation or multiple gene inactivation events? Molecular Biology and Evolution. 24: 1012-24. PMID 17267422 DOI: 10.1093/Molbev/Msm020 |
0.418 |
|
| 2007 |
Gibb GC, Kardailsky O, Kimball RT, Braun EL, Penny D. Mitochondrial genomes and avian phylogeny: complex characters and resolvability without explosive radiations. Molecular Biology and Evolution. 24: 269-80. PMID 17062634 DOI: 10.1093/Molbev/Msl158 |
0.665 |
|
| 2007 |
Cox WA, Kimball RT, Braun EL. Phylogenetic position of the New World quail (Odontophoridae): Eight nuclear loci and three mitochondrial regions contradict morphology and the Sibley-Ahlquist tapestry Auk. 124: 71-84. DOI: 10.1642/0004-8038(2007)124[71:Ppotnw]2.0.Co;2 |
0.634 |
|
| 2004 |
Katsu Y, Bermudez DS, Braun EL, Helbing C, Miyagawa S, Gunderson MP, Kohno S, Bryan TA, Guillette LJ, Iguchi T. Molecular cloning of the estrogen and progesterone receptors of the American alligator. General and Comparative Endocrinology. 136: 122-33. PMID 14980803 DOI: 10.1016/J.Ygcen.2003.11.008 |
0.315 |
|
| 2004 |
Braun EL, Natvig DO, Werner-Washburne M, Anne Nelson M. Genomics in Neurospora crassa: From One-Gene-One-Enzyme to 10,000 Genes Applied Mycology and Biotechnology. 4: 295-313. DOI: 10.1016/S1874-5334(04)80015-7 |
0.738 |
|
| 2003 |
Braun EL. Innovation from reduction: gene loss, domain loss and sequence divergence in genome evolution. Applied Bioinformatics. 2: 13-34. PMID 15130831 |
0.321 |
|
| 2003 |
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, ... ... Braun EL, et al. The genome sequence of the filamentous fungus Neurospora crassa. Nature. 422: 859-68. PMID 12712197 DOI: 10.1038/Nature01554 |
0.743 |
|
| 2003 |
Dias AP, Braun EL, McMullen MD, Grotewold E. Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication. Plant Physiology. 131: 610-20. PMID 12586885 DOI: 10.1104/Pp.012047 |
0.438 |
|
| 2002 |
Braun EL, Kimball RT. Examining Basal avian divergences with mitochondrial sequences: model complexity, taxon sampling, and sequence length. Systematic Biology. 51: 614-25. PMID 12228003 DOI: 10.1080/10635150290102294 |
0.663 |
|
| 2001 |
Braun EL, Kimball RT. Polytomies, the power of phylogenetic inference, and the stochastic nature of molecular evolution: a comment on Walsh et al. (1999). Evolution; International Journal of Organic Evolution. 55: 1261-3; discussion 1. PMID 11475063 DOI: 10.1111/J.0014-3820.2001.Tb00647.X |
0.591 |
|
| 2001 |
Randi E, Lucchini V, Hennache A, Kimball RT, Braun EL, Ligon JD. Evolution of the mitochondrial DNA control region and cytochrome b genes and the inference of phylogenetic relationships in the avian genus Lophura (Galliformes). Molecular Phylogenetics and Evolution. 19: 187-201. PMID 11341802 DOI: 10.1006/Mpev.2001.0922 |
0.63 |
|
| 2001 |
Armstrong MH, Braun EL, Kimball RT. Phylogenetic utility of avian ovomucoid intron G: A comparison of nuclear and mitochondrial phylogenies in galliformes Auk. 118: 799-804. DOI: 10.1642/0004-8038(2001)118[0799:Puoaoi]2.0.Co;2 |
0.669 |
|
| 2001 |
Kimball RT, Braun EL, Ligon DJ, Lucchini V, Randi E. A molecular phylogeny of the peacock-pheasants (Galliformes: Polyplectron spp.) indicates loss and reduction of ornamental traits and display behaviours Biological Journal of the Linnean Society. 73: 187-198. DOI: 10.1111/J.1095-8312.2001.Tb01356.X |
0.651 |
|
| 2000 |
Braun EL, Halpern AL, Nelson MA, Natvig DO. Large-scale comparison of fungal sequence information: mechanisms of innovation in Neurospora crassa and gene loss in Saccharomyces cerevisiae. Genome Research. 10: 416-30. PMID 10779483 DOI: 10.1101/Gr.10.4.416 |
0.485 |
|
| 2000 |
Randi E, Lucchini V, Armijo-Prewitt T, Kimball RT, Braun EL, Ligon JD. Mitochondrial DNA phylogeny and speciation in the tragopans Auk. 117: 1003-1015. DOI: 10.1642/0004-8038(2000)117[1003:Mdpasi]2.0.Co;2 |
0.673 |
|
| 1999 |
Bieszke JA, Braun EL, Bean LE, Kang S, Natvig DO, Borkovich KA. The nop-1 gene of Neurospora crassa encodes a seven transmembrane helix retinal-binding protein homologous to archaeal rhodopsins. Proceedings of the National Academy of Sciences of the United States of America. 96: 8034-9. PMID 10393943 DOI: 10.1073/Pnas.96.14.8034 |
0.322 |
|
| 1999 |
Kimball RT, Braun EL, Zwartjes PW, Crowe TM, Ligon JD. A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Molecular Phylogenetics and Evolution. 11: 38-54. PMID 10082609 DOI: 10.1006/Mpev.1998.0562 |
0.656 |
|
| 1998 |
Braun EL, Kang S, Nelson MA, Natvig DO. Identification of the first fungal annexin: analysis of annexin gene duplications and implications for eukaryotic evolution. Journal of Molecular Evolution. 47: 531-43. PMID 9797403 DOI: 10.1007/Pl00006409 |
0.449 |
|
| 1997 |
Kimball RT, Braun EL, Ligon JD. Resolution of the phylogenetic position of the Congo peafowl, Afropavo congensis: a biogeographic and evolutionary enigma. Proceedings. Biological Sciences / the Royal Society. 264: 1517-23. PMID 9364791 DOI: 10.1098/Rspb.1997.0210 |
0.644 |
|
| 1997 |
Nelson MA, Kang S, Braun EL, Crawford ME, Dolan PL, Leonard PM, Mitchell J, Armijo AM, Bean L, Blueyes E, Cushing T, Errett A, Fleharty M, Gorman M, Judson K, et al. Expressed sequences from conidial, mycelial, and sexual stages of Neurospora crassa. Fungal Genetics and Biology : Fg & B. 21: 348-63. PMID 9290248 DOI: 10.1006/Fgbi.1997.0986 |
0.72 |
|
| 1996 |
Braun EL, Fuge EK, Padilla PA, Werner-Washburne M. A stationary-phase gene in Saccharomyces cerevisiae is a member of a novel, highly conserved gene family. Journal of Bacteriology. 178: 6865-72. PMID 8955308 DOI: 10.1128/Jb.178.23.6865-6872.1996 |
0.688 |
|
| 1996 |
Werner-Washburne M, Braun EL, Crawford ME, Peck VM. Stationary phase in Saccharomyces cerevisiae. Molecular Microbiology. 19: 1159-66. PMID 8730858 DOI: 10.1111/J.1365-2958.1996.Tb02461.X |
0.637 |
|
| 1994 |
Fuge EK, Braun EL, Werner-Washburne M. Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. Journal of Bacteriology. 176: 5802-13. PMID 8083172 DOI: 10.1128/Jb.176.18.5802-5813.1994 |
0.624 |
|
| 1993 |
Werner-Washburne M, Braun E, Johnston GC, Singer RA. Stationary phase in the yeast Saccharomyces cerevisiae. Microbiological Reviews. 57: 383-401. DOI: 10.1128/Mmbr.57.2.383-401.1993 |
0.635 |
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