Ali Shilatifard - Related publications

Saint Louis University, St. Louis, MO, United States 
Molecular Biology, Biochemistry, Cell Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Brownell JE, Allis CD. HAT discovery: Heading toward an elusive goal with a key biological assist. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194605. PMID 32711094 DOI: 10.1016/j.bbagrm.2020.194605   
2020 Armache A, Yang S, Martínez de Paz A, Robbins LE, Durmaz C, Cheong JQ, Ravishankar A, Daman AW, Ahimovic DJ, Klevorn T, Yue Y, Arslan T, Lin S, Panchenko T, Hrit J, et al. Histone H3.3 phosphorylation amplifies stimulation-induced transcription. Nature. PMID 32699416 DOI: 10.1038/s41586-020-2533-0   
2020 Verza FA, Das U, Fachin AL, Dimmock JR, Marins M. Roles of Histone Deacetylases and Inhibitors in Anticancer Therapy. Cancers. 12. PMID 32585896 DOI: 10.3390/cancers12061664   
2020 Liu CF, Abnousi A, Bazeley P, Ni Y, Morley M, Moravec CS, Hu M, Tang WHW. Global analysis of histone modifications and long-range chromatin interactions revealed the differential cistrome changes and novel transcriptional players in human dilated cardiomyopathy. Journal of Molecular and Cellular Cardiology. PMID 32533974 DOI: 10.1016/j.yjmcc.2020.06.001   
2020 Farooqi AA, Fayyaz S, Poltronieri P, Calin G, Mallardo M. Epigenetic deregulation in cancer: Enzyme players and non-coding RNAs. Seminars in Cancer Biology. PMID 32738290 DOI: 10.1016/j.semcancer.2020.07.013   
2020 Verma A, Maini J, Jain S, Ghasemi M, Kohli S, Brahmachari V. Epigenetic regulation and transcriptional memory in development; selection facilitating prudence. The International Journal of Developmental Biology. 64: 191-211. PMID 32659007 DOI: 10.1387/ijdb.190285vb   
2020 Estève PO, Vishnu US, Chin HG, Pradhan S. Visualization and Sequencing of Accessible Chromatin Reveals Cell Cycle and Post Romidepsin Treatment Dynamics. Journal of Molecular Biology. PMID 32763232 DOI: 10.1016/j.jmb.2020.07.023   
2020 Iyer VR. The specificity of H2A.Z occupancy in the yeast genome and its relationship to transcription. Current Genetics. PMID 32537667 DOI: 10.1007/s00294-020-01087-7   
2020 Chen R, Zhang M, Zhou Y, Guo W, Yi M, Zhang Z, Ding Y, Wang Y. The application of histone deacetylases inhibitors in glioblastoma. Journal of Experimental & Clinical Cancer Research : Cr. 39: 138. PMID 32682428 DOI: 10.1186/s13046-020-01643-6   
2020 Leng X, Thomas Q, Rasmussen SH, Marquardt S. A G(enomic)P(ositioning)S(ystem) for Plant RNAPII Transcription. Trends in Plant Science. 25: 744-764. PMID 32673579 DOI: 10.1016/j.tplants.2020.03.005   
2020 Martire S, Banaszynski LA. The roles of histone variants in fine-tuning chromatin organization and function. Nature Reviews. Molecular Cell Biology. PMID 32665685 DOI: 10.1038/s41580-020-0262-8   
2020 de Rooij PGH, Perrella G, Kaiserli E, van Zanten M. The diverse and unanticipated roles of Histone deacetylase 9 in coordinating plant development and environmental acclimation. Journal of Experimental Botany. PMID 32687569 DOI: 10.1093/jxb/eraa335   
2020 Strahl BD, Briggs SD. The SAGA continues: The rise of cis- and trans-histone crosstalk pathways. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194600. PMID 32645359 DOI: 10.1016/j.bbagrm.2020.194600   
2020 Bobkov GOM, Huang A, van den Berg SJW, Mitra S, Anselm E, Lazou V, Schunter S, Feederle R, Imhof A, Lusser A, Jansen LET, Heun P. Spt6 is a maintenance factor for centromeric CENP-A. Nature Communications. 11: 2919. PMID 32522980 DOI: 10.1038/s41467-020-16695-7   
2020 Demetriadou C, Koufaris C, Kirmizis A. Histone N-alpha terminal modifications: genome regulation at the tip of the tail. Epigenetics & Chromatin. 13: 29. PMID 32680559 DOI: 10.1186/s13072-020-00352-w   
2020 Qiu H, Biernat E, Govind CK, Rawal Y, Chereji RV, Clark DJ, Hinnebusch AG. Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast. Nucleic Acids Research. PMID 32663283 DOI: 10.1093/nar/gkaa571   
2020 Gong X, Yu Q, Duan K, Tong Y, Zhang X, Mei Q, Lu L, Yu X, Li S. Histone acetyltransferase Gcn5 regulates gene expression by promoting the transcription of histone methyltransferase SET1. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194603. PMID 32663628 DOI: 10.1016/j.bbagrm.2020.194603   
2020 Turowski TW, Tollervey D. Extended ncRNAs Interfere with Promoter Nucleosome Dynamics. Trends in Genetics : Tig. PMID 32546405 DOI: 10.1016/j.tig.2020.05.011   
2020 Turowski TW, Tollervey D. Extended ncRNAs Interfere with Promoter Nucleosome Dynamics. Trends in Genetics : Tig. PMID 32546405 DOI: 10.1016/j.tig.2020.05.011   
2020 Turowski TW, Tollervey D. Extended ncRNAs Interfere with Promoter Nucleosome Dynamics. Trends in Genetics : Tig. PMID 32546405 DOI: 10.1016/j.tig.2020.05.011   
2020 Yu J, Xiong C, Zhuo B, Wen Z, Shen J, Liu C, Chang L, Wang K, Wang M, Wu C, Wu X, Xu X, Ruan H, Li G. Analysis of Local Chromatin States Reveals Gene Transcription Potential during Mouse Neural Progenitor Cell Differentiation. Cell Reports. 32: 107953. PMID 32726618 DOI: 10.1016/j.celrep.2020.107953   
2020 Turnbull RE, Fairall L, Saleh A, Kelsall E, Morris KL, Ragan TJ, Savva CG, Chandru A, Millard CJ, Makarova OV, Smith CJ, Roseman AM, Fry AM, Cowley SM, Schwabe JWR. The MiDAC histone deacetylase complex is essential for embryonic development and has a unique multivalent structure. Nature Communications. 11: 3252. PMID 32591534 DOI: 10.1038/s41467-020-17078-8   
2020 Jain N, Tamborrini D, Evans B, Chaudhry S, Wilkins BJ, Neumann H. Interaction of RSC Chromatin Remodeling Complex with Nucleosomes Is Modulated by H3 K14 Acetylation and H2B SUMOylation In Vivo. Iscience. 23: 101292. PMID 32623337 DOI: 10.1016/j.isci.2020.101292   
2020 Lezmi E, Weissbein U, Golan-Lev T, Nissim-Rafinia M, Meshorer E, Benvenisty N. The Chromatin Regulator ZMYM2 Restricts Human Pluripotent Stem Cell Growth and Is Essential for Teratoma Formation. Stem Cell Reports. PMID 32559458 DOI: 10.1016/j.stemcr.2020.05.014   
2020 Zhang H, Guo F, Qi P, Huang Y, Xie Y, Xu L, Han N, Xu L, Bian H. OsHDA710-mediated Histone Deacetylation Regulates Callus Formation of Rice Mature Embryo. Plant & Cell Physiology. PMID 32592489 DOI: 10.1093/pcp/pcaa086   
2020 Jing Y, Ding D, Tian G, Kwan KCJ, Liu Z, Ishibashi T, Li XD. Semisynthesis of site-specifically succinylated histone reveals that succinylation regulates nucleosome unwrapping rate and DNA accessibility. Nucleic Acids Research. PMID 32766790 DOI: 10.1093/nar/gkaa663   
2020 Wang G, Song L, Bai T, Liang W. BcSas2-mediated histone H4K16 acetylation is critical for virulence and oxidative stress response of Botrytis cinerea. Molecular Plant-Microbe Interactions : Mpmi. PMID 32689887 DOI: 10.1094/MPMI-06-20-0149-R   
2020 McBride MJ, Mashtalir N, Winter EB, Dao HT, Filipovski M, D'Avino AR, Seo HS, Umbreit NT, St Pierre R, Valencia AM, Qian K, Zullow HJ, Jaffe JD, Dhe-Paganon S, Muir TW, et al. The nucleosome acidic patch and H2A ubiquitination underlie mSWI/SNF recruitment in synovial sarcoma. Nature Structural & Molecular Biology. PMID 32747783 DOI: 10.1038/s41594-020-0466-9   
2020 Wang Z, Zhang Y, Dai K, Liang Z, Zhu M, Zhang M, Pan J, Hu X, Zhang X, Xue R, Cao G, Gong C. circEgg regulates histone H3K9me3 by sponging bmo-miR-3391-5p and encoding circEgg-P122 protein in the silkworm, Bombyx mori. Insect Biochemistry and Molecular Biology. 103430. PMID 32585305 DOI: 10.1016/j.ibmb.2020.103430   
2020 Tsai K, Cullen BR. Epigenetic and epitranscriptomic regulation of viral replication. Nature Reviews. Microbiology. PMID 32533130 DOI: 10.1038/s41579-020-0382-3   
2020 Yang X, Yan J, Zhang Z, Lin T, Xin T, Wang B, Wang S, Zhao J, Zhang Z, Lucas WJ, Li G, Huang S. Regulation of plant architecture by a new histone acetyltransferase targeting gene bodies. Nature Plants. 6: 809-822. PMID 32665652 DOI: 10.1038/s41477-020-0715-2   
2020 Hayashi-Takanaka Y, Kina Y, Nakamura F, Becking LE, Nakao Y, Nagase T, Nozaki N, Kimura H. Histone modification dynamics as revealed by a multicolor immunofluorescence-based single-cell analysis. Journal of Cell Science. PMID 32576661 DOI: 10.1242/jcs.243444   
2020 Kang SJ, Chun T. Structural heterogeneity of the mammalian polycomb repressor complex in immune regulation. Experimental & Molecular Medicine. PMID 32636442 DOI: 10.1038/s12276-020-0462-5   
2020 Au YZ, Gu M, De Braekeleer E, Gozdecka M, Aspris D, Tarumoto Y, Cooper J, Yu J, Ong SH, Chen X, Tzelepis K, Huntly BJP, Vassiliou G, Yusa K. KAT7 is a genetic vulnerability of acute myeloid leukemias driven by MLL rearrangements. Leukemia. PMID 32764680 DOI: 10.1038/s41375-020-1001-z   
2020 Gorkin DU, Barozzi I, Zhao Y, Zhang Y, Huang H, Lee AY, Li B, Chiou J, Wildberg A, Ding B, Zhang B, Wang M, Strattan JS, Davidson JM, Qiu Y, et al. An atlas of dynamic chromatin landscapes in mouse fetal development. Nature. 583: 744-751. PMID 32728240 DOI: 10.1038/s41586-020-2093-3   
2020 Martire S, Nguyen J, Sundaresan A, Banaszynski LA. Differential contribution of p300 and CBP to regulatory element acetylation in mESCs. Bmc Molecular and Cell Biology. 21: 55. PMID 32690000 DOI: 10.1186/s12860-020-00296-9   
2020 Henn L, Szabó A, Imre L, Román Á, Ábrahám A, Vedelek B, Nánási P, Boros IM. Alternative linker histone permits fast paced nuclear divisions in early Drosophila embryo. Nucleic Acids Research. PMID 32710625 DOI: 10.1093/nar/gkaa624   
2020 Shchuka VM, Abatti LE, Hou H, Khader N, Dorogin A, Wilson MD, Shynlova O, Mitchell JA. The pregnant myometrium is epigenetically activated at contractility-driving gene loci prior to the onset of labor in mice. Plos Biology. 18: e3000710. PMID 32667910 DOI: 10.1371/journal.pbio.3000710   
2020 Wang Y, Zhong Z, Zhang Y, Xu L, Feng S, Rayatpisheh S, Wohlschlegel JA, Wang Z, Jacobsen SE, Ausin I. NAP1-RELATED PROTEIN1 and 2 negatively regulate H2A.Z abundance in chromatin in Arabidopsis. Nature Communications. 11: 2887. PMID 32513971 DOI: 10.1038/s41467-020-16691-x   
2020 Walker C, Burggren W. Remodeling the epigenome and (epi)cytoskeleton: a new paradigm for co-regulation by methylation. The Journal of Experimental Biology. 223. PMID 32620673 DOI: 10.1242/jeb.220632   
2020 Zhao M, Tao Y, Peng GH. The Role of Histone Acetyltransferases and Histone Deacetylases in Photoreceptor Differentiation and Degeneration. International Journal of Medical Sciences. 17: 1307-1314. PMID 32624685 DOI: 10.7150/ijms.43140   
2020 Jiao H, Xie Y, Li Z. Current understanding of plant Polycomb group proteins and the repressive histone H3 Lysine 27 trimethylation. Biochemical Society Transactions. PMID 32725200 DOI: 10.1042/BST20200192   
2020 Oikawa M, Simeone A, Hormanseder E, Teperek M, Gaggioli V, O'Doherty A, Falk E, Sporniak M, D'Santos C, Franklin VNR, Kishore K, Bradshaw CR, Keane D, Freour T, David L, et al. Epigenetic homogeneity in histone methylation underlies sperm programming for embryonic transcription. Nature Communications. 11: 3491. PMID 32661239 DOI: 10.1038/s41467-020-17238-w   
2020 Maleszewska M, Steranka A, Smiech M, Kaza B, Pilanc P, Dabrowski M, Kaminska B. Sequential changes in histone modifications shape transcriptional responses underlying microglia polarization by glioma. Glia. PMID 32710676 DOI: 10.1002/glia.23887   
2020 Okuda M, Nishimura Y. The Eaf3 chromodomain acts as a pH sensor for gene expression by altering its binding affinity for histone methylated-lysine residues. Bioscience Reports. 40. PMID 32031206 DOI: 10.1042/BSR20191958   
2020 Zhou D, Liu J. Nucleosome movement analysis based on second-order information entropy and density functional theory. Biophysical Chemistry. 265: 106436. PMID 32731086 DOI: 10.1016/j.bpc.2020.106436   
2020 Hainer SJ, Kaplan CD. Specialized RSC: Substrate Specificities for a Conserved Chromatin Remodeler. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 42: e2000002. PMID 32490565 DOI: 10.1002/bies.202000002   
2020 Healton SE, Pinto HD, Mishra LN, Hamilton GA, Wheat JC, Swist-Rosowska K, Shukeir N, Dou Y, Steidl U, Jenuwein T, Gamble MJ, Skoultchi AI. H1 linker histones silence repetitive elements by promoting both histone H3K9 methylation and chromatin compaction. Proceedings of the National Academy of Sciences of the United States of America. PMID 32513732 DOI: 10.1073/pnas.1920725117   
2020 Roston A, Evans D, Gill H, McKinnon M, Isidor B, Cogné B, Mwenifumbo J, van Karnebeek C, An J, Jones SJM, Farrer M, Demos M, Connolly M, Gibson WT, , , et al. -associated neurodevelopmental disorder. Journal of Medical Genetics. PMID 32546566 DOI: 10.1136/jmedgenet-2019-106756   
2020 Lerner J, Gomez-Garcia PA, McCarthy RL, Liu Z, Lakadamyali M, Zaret KS. Two-Parameter Mobility Assessments Discriminate Diverse Regulatory Factor Behaviors in Chromatin. Molecular Cell. PMID 32574554 DOI: 10.1016/j.molcel.2020.05.036