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Udayan Mohanty - Publications

Affiliations: 
Boston College, Newton, MA, United States 
Area:
Theoretical physical chemistry, chemical physics
Website:
https://sites.bc.edu/udayan-mohanty/
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hutchison C, Bhattarai A, Wang A, Mohanty U. Fluctuation Effects in the Adam-Gibbs Model of Cooperative Relaxation. The Journal of Physical Chemistry. B. PMID 31513406 DOI: 10.1021/Acs.Jpcb.9B06037  0.33
2019 Levi M, Bandarkar P, Yang H, Wang A, Mohanty U, Noel JK, Whitford PC. Using SMOG 2 to Simulate Complex Biomolecular Assemblies. Methods in Molecular Biology (Clifton, N.J.). 2022: 129-151. PMID 31396902 DOI: 10.1007/978-1-4939-9608-7_6  0.31
2018 Lammert H, Wang A, Mohanty U, Onuchic JN. RNA as a Complex Polymer with Coupled Dynamics of Ions and Water in the Outer Solvation Sphere. The Journal of Physical Chemistry. B. PMID 30102033 DOI: 10.1021/Acs.Jpcb.8B06874  0.313
2015 Hayes RL, Noel JK, Mandic A, Whitford PC, Sanbonmatsu KY, Mohanty U, Onuchic JN. Generalized Manning Condensation Model Captures the RNA Ion Atmosphere. Physical Review Letters. 114: 258105. PMID 26197147 DOI: 10.1103/Physrevlett.114.258105  0.308
2015 Hayes RL, Noel JK, Mandic A, Whitford PC, Sanbonmatsu KY, Mohanty U, Onuchic JN. Magnesium Dependence of the RNA Free Energy Landscape Biophysical Journal. 108: 235a. DOI: 10.1016/J.Bpj.2014.11.1301  0.31
2014 Hayes RL, Noel JK, Whitford PC, Mohanty U, Sanbonmatsu KY, Onuchic JN. Reduced model captures Mg(2+)-RNA interaction free energy of riboswitches. Biophysical Journal. 106: 1508-19. PMID 24703312 DOI: 10.1016/J.Bpj.2014.01.042  0.315
2014 Guo Z, Streu K, Krilov G, Mohanty U. Probing the origin of structural stability of single and double stapled p53 peptide analogs bound to MDM2. Chemical Biology & Drug Design. 83: 631-42. PMID 24418072 DOI: 10.1111/Cbdd.12284  0.745
2012 Hayes RL, Onuchic J, Noel J, Sanbonmatsu K, Mohanty U. Glass-Like Behavior of Magnesium Ions Inside RNA APTamers Biophysical Journal. 102: 646a. DOI: 10.1016/J.Bpj.2011.11.3519  0.309
2011 Guo Z, Gibson M, Sitha S, Chu S, Mohanty U. Role of large thermal fluctuations and magnesium ions in t-RNA selectivity of the ribosome. Proceedings of the National Academy of Sciences of the United States of America. 108: 3947-51. PMID 21368154 DOI: 10.1073/Pnas.1100671108  0.736
2010 Guo Z, Mohanty U, Noehre J, Sawyer TK, Sherman W, Krilov G. Probing the alpha-helical structural stability of stapled p53 peptides: molecular dynamics simulations and analysis. Chemical Biology & Drug Design. 75: 348-59. PMID 20331649 DOI: 10.1111/J.1747-0285.2010.00951.X  0.742
2010 Mohanty U, Guo Z, Nohere J, Sawyer T, Sherman W, Krilov G. Simulation Study of Stapled Alpha-Helical P53 Peptide Analogs:probing the Relationship between Structural Stability and Biological Potency Biophysical Journal. 98: 463a. DOI: 10.1016/J.Bpj.2009.12.2517  0.745
2009 Haran TE, Mohanty U. The unique structure of A-tracts and intrinsic DNA bending. Quarterly Reviews of Biophysics. 42: 41-81. PMID 19508739 DOI: 10.1017/S0033583509004752  0.338
2009 Mohanty U. Polyelectrolyte Behavior And Kinetics Of The Aminoacyl-trna On The Ribosome Biophysical Journal. 96: 581a. DOI: 10.1016/J.Bpj.2008.12.3039  0.344
2008 Guo Z, Taubes CH, Oh JE, Maher LJ, Mohanty U. DNA on a tube: electrostatic contribution to stiffness. The Journal of Physical Chemistry. B. 112: 16163-9. PMID 19053713 DOI: 10.1021/Jp806260H  0.735
2005 Mohanty U, Spasic A, Kim HD, Chu S. Ion atmosphere of three-way junction nucleic acid. The Journal of Physical Chemistry. B. 109: 21369-74. PMID 16853772 DOI: 10.1021/Jp050005O  0.665
2005 Taubes CH, Mohanty U, Chu S. Ion atmosphere around nucleic acid. The Journal of Physical Chemistry. B. 109: 21267-72. PMID 16853757 DOI: 10.1021/Jp051590W  0.342
2005 Schultes EA, Spasic A, Mohanty U, Bartel DP. Compact and ordered collapse of randomly generated RNA sequences. Nature Structural & Molecular Biology. 12: 1130-6. PMID 16273104 DOI: 10.1038/Nsmb1014  0.669
2004 Haran TE, Cohen I, Spasic A, Yang K, Mohanty U. Characteristics of migration patterns of DNA oligomers in gels and the relationship to the question of intrinsic DNA bending. Journal of the American Chemical Society. 126: 2372-7. PMID 14982442 DOI: 10.1021/Ja030572U  0.684
2003 Haran TE, Cohen I, Spasic A, Yang K, Mohanty U. Dynamics of curved DNA molecules: prediction and experiment. Journal of the American Chemical Society. 125: 11160-1. PMID 16220913 DOI: 10.1021/Ja0303337  0.697
2003 Mohanty U, Taubes CH. Dynamics of bent molecules in gels Journal of Physical Chemistry B. 107: 6187-6193. DOI: 10.1021/Jp030309F  0.314
2002 Tanaka H, Mohanty U. On the Debye-Waller factor of hexagonal ice: a computer simulation study. Journal of the American Chemical Society. 124: 8085-9. PMID 12095352 DOI: 10.1021/Ja011927H  0.311
2001 Mohanty U, McLaughlin L. On the characteristics of migration of oligomeric DNA in polyacrylamide gels and in free solution Annual Review of Physical Chemistry. 52: 93-106. PMID 11326060 DOI: 10.1146/Annurev.Physchem.52.1.93  0.326
2000 Mohanty U, Searls T, McLaughlin LW. Anomalous Migration of Short Sequences of DNA: Comparison of Theory and Experiment. Journal of Biomolecular Structure & Dynamics. 17: 371-5. PMID 22607446 DOI: 10.1080/07391102.2000.10506643  0.33
1991 Bhattacharya I, Singh U, Mohanty U. A molecular theory of melting Physica a: Statistical Mechanics and Its Applications. 175: 473-484. DOI: 10.1016/0378-4371(91)90244-7  0.308
1991 Mohanty U. On the nature of supercooled and glassy states of matter Physica a: Statistical Mechanics and Its Applications. 177: 345-355. DOI: 10.1016/0378-4371(91)90172-9  0.313
1989 Singh UP, Mohanty U, Singh Y. A theory of freezing for molecular liquids Physica a: Statistical Mechanics and Its Applications. 158: 817-841. DOI: 10.1016/0378-4371(89)90493-7  0.308
1988 Mohanty U. Configuration entropy dependence of cooperative relaxation properties in glass‐forming liquids The Journal of Chemical Physics. 89: 3778-3782. DOI: 10.1063/1.454900  0.323
1985 Lipkin MD, Rice SA, Mohanty U. The elastic constants of condensed matter: A direct‐correlation function approach The Journal of Chemical Physics. 82: 472-479. DOI: 10.1063/1.448769  0.301
1984 Bagchi B, Cerjan C, Mohanty U, Rice SA. Crystallization of the classical one-component plasma Physical Review B. 29: 2857-2860. DOI: 10.1103/Physrevb.29.2857  0.462
1982 Shuler KE, Mohanty U. Random walk properties from lattice bond enumeration: Steady-state diffusion on two- and three-dimensional lattices with traps. Proceedings of the National Academy of Sciences of the United States of America. 79: 4515-8. PMID 16593215 DOI: 10.1073/Pnas.79.14.4515  0.578
1982 Mohanty U, Shuler KE, Oppenheim I. On the exact and phenomenological Langevin equations for a harmonic oscillator in a fluid Physica a: Statistical Mechanics and Its Applications. 115: 1-20. DOI: 10.1016/0378-4371(82)90126-1  0.563
1982 Bagchi B, Mohanty U. Spatial bose condensation: Universal features in size distribution of clusters Physics Letters A. 91: 77-79. DOI: 10.1016/0375-9601(82)90270-5  0.453
1982 Mohanty U, Bagchi B, Gibbs JH. Bimodality and long-range order in ideal Bose systems Journal of Statistical Physics. 28: 685-710. DOI: 10.1007/Bf01011876  0.649
1981 Shuler KE, Mohanty U. Random walk properties from lattice bond enumeration: Anisotropic diffusion in lattices with periodic and randomly distributed scatterers. Proceedings of the National Academy of Sciences of the United States of America. 78: 6576-8. PMID 16593111 DOI: 10.1073/Pnas.78.11.6576  0.576
1981 Gibbs JH, Bagchi B, Mohanty U. Bimodality of cluster-size distribution and condensation in a finite Lennard-Jones system Physical Review B. 24: 2893-2902. DOI: 10.1103/Physrevb.24.2893  0.644
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