Udayan Mohanty - Publications

Affiliations: 
Boston College, Newton, MA, United States 
Area:
Theoretical physical chemistry, chemical physics
Website:
https://sites.bc.edu/udayan-mohanty/

37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Hayes RL, Noel JK, Mandic A, Whitford PC, Sanbonmatsu KY, Mohanty U, Onuchic JN. Generalized Manning Condensation Model Captures the RNA Ion Atmosphere Physical Review Letters. 114. DOI: 10.1103/PhysRevLett.114.258105  0.52
2014 Hayes RL, Noel JK, Whitford PC, Mohanty U, Sanbonmatsu KY, Onuchic JN. Reduced model captures Mg(2+)-RNA interaction free energy of riboswitches. Biophysical Journal. 106: 1508-19. PMID 24703312 DOI: 10.1016/J.Bpj.2014.01.042  0.52
2014 Guo Z, Streu K, Krilov G, Mohanty U. Probing the origin of structural stability of single and double stapled p53 peptide analogs bound to MDM2. Chemical Biology & Drug Design. 83: 631-42. PMID 24418072 DOI: 10.1111/Cbdd.12284  0.52
2012 Hayes RL, Noel JK, Mohanty U, Whitford PC, Hennelly SP, Onuchic JN, Sanbonmatsu KY. Magnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch. Journal of the American Chemical Society. 134: 12043-53. PMID 22612276 DOI: 10.1021/Ja301454U  0.52
2011 Guo Z, Gibson M, Sitha S, Chu S, Mohanty U. Role of large thermal fluctuations and magnesium ions in t-RNA selectivity of the ribosome. Proceedings of the National Academy of Sciences of the United States of America. 108: 3947-51. PMID 21368154 DOI: 10.1073/Pnas.1100671108  0.52
2010 Guo Z, Mohanty U, Noehre J, Sawyer TK, Sherman W, Krilov G. Probing the alpha-helical structural stability of stapled p53 peptides: molecular dynamics simulations and analysis. Chemical Biology & Drug Design. 75: 348-59. PMID 20331649 DOI: 10.1111/J.1747-0285.2010.00951.X  0.52
2009 Haran TE, Mohanty U. The unique structure of A-tracts and intrinsic DNA bending. Quarterly Reviews of Biophysics. 42: 41-81. PMID 19508739 DOI: 10.1017/S0033583509004752  0.52
2008 Guo Z, Taubes CH, Oh JE, Maher LJ, Mohanty U. DNA on a tube: electrostatic contribution to stiffness. The Journal of Physical Chemistry. B. 112: 16163-9. PMID 19053713 DOI: 10.1021/Jp806260H  0.52
2008 Spasic A, Sitha S, Korchak M, Chu S, Shanty U. Polyelectrolyte behavior and kinetics of aminoacyl-tRNA on the ribosome Journal of Physical Chemistry B. 112: 4161-4163. PMID 18351762 DOI: 10.1021/Jp711478T  0.48
2005 Mohanty U, Spasic A, Kim HD, Chu S. Ion atmosphere of three-way junction nucleic acid. The Journal of Physical Chemistry. B. 109: 21369-74. PMID 16853772 DOI: 10.1021/Jp050005O  0.52
2005 Taubes CH, Mohanty U, Chu S. Ion atmosphere around nucleic acid. The Journal of Physical Chemistry. B. 109: 21267-72. PMID 16853757 DOI: 10.1021/Jp051590W  0.52
2005 Schultes EA, Spasic A, Mohanty U, Bartel DP. Compact and ordered collapse of randomly generated RNA sequences. Nature Structural & Molecular Biology. 12: 1130-6. PMID 16273104 DOI: 10.1038/Nsmb1014  0.52
2004 Haran TE, Cohen I, Spasic A, Yang K, Mohanty U. Characteristics of migration patterns of DNA oligomers in gels and the relationship to the question of intrinsic DNA bending. Journal of the American Chemical Society. 126: 2372-7. PMID 14982442 DOI: 10.1021/Ja030572U  0.52
2003 Haran TE, Cohen I, Spasic A, Yang K, Mohanty U. Dynamics of curved DNA molecules: prediction and experiment. Journal of the American Chemical Society. 125: 11160-1. PMID 16220913 DOI: 10.1021/Ja0303337  0.52
2003 Gerardin J, Mohanty S, Mohanty U. Dynamics of supercooled liquids: Universality of relaxation time near the crossover temperature Journal of Chemical Physics. 119: 4473-4477. DOI: 10.1063/1.1593019  0.52
2003 Mohanty U, Taubes CH. Dynamics of bent molecules in gels Journal of Physical Chemistry B. 107: 6187-6193. DOI: 10.1021/Jp030309F  0.52
2001 Mohanty U, Craig N, Fourkas JT. Relationship between dynamical and equilibrium characteristics of glass-forming polymeric liquids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 64: 010501. PMID 11461209 DOI: 10.1103/Physreve.64.010501  0.52
2001 Mohanty U, McLaughlin L. On the characteristics of migration of oligomeric DNA in polyacrylamide gels and in free solution Annual Review of Physical Chemistry. 52: 93-106. PMID 11326060 DOI: 10.1146/Annurev.Physchem.52.1.93  0.52
2001 Mohanty U, Craig N, Fourkas JT. Relationship between kinetics and thermodynamics of supercooled liquids Journal of Chemical Physics. 114: 10577-10578. DOI: 10.1063/1.1381060  0.52
2000 Mohanty U, Diezemann G, Oppenheim I. On the nature of slow β-relaxation in supercooled liquids Journal of Physics Condensed Matter. 12: 6431-6435. DOI: 10.1088/0953-8984/12/29/315  0.52
2000 Mohanty U, Searls T, McLaughlin LW. Anomalous migration of short sequences of DNA: Comparison of theory and experiment Journal of Biomolecular Structure and Dynamics. 17: 371-375. DOI: 10.1080/07391102.2000.10506643  0.52
2000 Mohanty U, Diezemann G, Fourkas JT. On the relationships among special temperatures for supercooled liquids: a configuration space analysis Journal of Chemical Physics. 113: 3719-3722. DOI: 10.1063/1.1287736  0.52
2000 Mohanty U, Searls T, McLaughlin LW. Migration effects for small phosphate-labeled single-stranded DNA fragments in gels: Prediction and experiment [6] Journal of the American Chemical Society. 122: 1225-1226. DOI: 10.1021/Ja992241G  0.52
1999 Diezemann G, Mohanty U, Oppenheim I. Slow secondary relaxation in a free-energy landscape model for relaxation in glass-forming liquids Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 59: 2067-2083. DOI: 10.1103/Physreve.59.2067  0.52
1999 Loughnane BJ, Scodinu A, Farrer RA, Fourkas JT, Mohanty U. Exponential intermolecular dynamics in optical Kerr effect spectroscopy of small-molecule liquids Journal of Chemical Physics. 111: 2686-2694. DOI: 10.1063/1.479544  0.52
1998 Deschenes LA, Barrett J, Muller LJ, Fourkas JT, Mohanty U. Inhibition of bubble coalescence in aqueous solutions. 1. Electrolytes Journal of Physical Chemistry B. 102: 5115-5119. DOI: 10.1021/Jp980828W  0.52
1998 Mohanty U, Searls T, McLaughlin LW. Anomalous migration of short sequences of nucleic acids in polyacrylamide gels: Prediction and experiment [16] Journal of the American Chemical Society. 120: 8275-8276. DOI: 10.1021/Ja981745W  0.52
1997 Deschenes LA, Zilaro P, Muller LJ, Fourkas JT, Mohanty U. Quantitative measure of hydrophobicity: Experiment and theory Journal of Physical Chemistry B. 101: 5777-5779. DOI: 10.1021/Jp970849A  0.52
1996 Mohanty U, Ninham BW, Oppenheim I. Dressed polyions, counterion condensation, and adsorption excess in polyelectrolyte solutions. Proceedings of the National Academy of Sciences of the United States of America. 93: 4342-4. PMID 8633067 DOI: 10.1073/Pnas.93.9.4342  0.52
1994 Mohanty U, Oppenheim I, Taubes CH. Low-temperature relaxation and entropic barriers in supercooled liquids. Science (New York, N.Y.). 266: 425-7. PMID 17816687 DOI: 10.1126/Science.266.5184.425  0.52
1985 Jones GL, Mohanty U. A density functional-variational treatment of the hard sphere transition Molecular Physics. 54: 1241-1252. DOI: 10.1080/00268978500100981  0.52
1983 Lindenberg K, Mohanty U, Seshadri V. Hamiltonian model for the Brownian motion of a rigid rotor Physica a: Statistical Mechanics and Its Applications. 119: 1-16. DOI: 10.1016/0378-4371(83)90142-5  0.52
1982 Mohanty U, Shuler KE, Oppenheim I. On the exact and phenomenological Langevin equations for a harmonic oscillator in a fluid Physica a: Statistical Mechanics and Its Applications. 115: 1-20. DOI: 10.1016/0378-4371(82)90126-1  0.52
1982 Bagchi B, Mohanty U. Spatial bose condensation: Universal features in size distribution of clusters Physics Letters A. 91: 77-79. DOI: 10.1016/0375-9601(82)90270-5  0.52
1982 Mohanty U, Bagchi B, Gibbs JH. Bimodality and long-range order in ideal Bose systems Journal of Statistical Physics. 28: 685-710. DOI: 10.1007/Bf01011876  0.52
1981 Gibbs JH, Bagchi B, Mohanty U. Bimodality of cluster-size distribution and condensation in a finite Lennard-Jones system Physical Review B. 24: 2893-2902. DOI: 10.1103/Physrevb.24.2893  0.52
1981 Berkcan E, Cooper LN, Mohanty U. The Bethe ansatz, periodic boundary conditions and relations between various models Physics Letters A. 81: 172-174. DOI: 10.1016/0375-9601(81)90054-2  0.52
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