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Paul M. Lizardi - Publications

Affiliations: 
Yale University, New Haven, CT 
Area:
Bioinformatics Biology, Molecular Biology, Cell Biology
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Cuadros M, Cano C, Garcia-Rodriguez S, Martín JL, Poyatos-Andujar A, Ruiz-Cabello F, Pedrinaci S, Durán G, Benavides M, Bautista-Ojeda MD, Pereda T, Benitez-Cantos MS, Medina P, Blanco A, Gonzalez A, ... Lizardi P, et al. Acceleration of the DNA methylation clock among lynch syndrome-associated mutation carriers. Bmc Medical Genomics. 15: 45. PMID 35246124 DOI: 10.1186/s12920-022-01183-2  0.336
2016 Lizardi PM, Yan Q, Wajapeyee N. DNA Bisulfite Sequencing for Single-Nucleotide-Resolution DNA Methylation Detection. Cold Spring Harbor Protocols. PMID 27852843 DOI: 10.1101/Pdb.Prot094839  0.592
2016 Lizardi PM, Yan Q, Wajapeyee N. High-Throughput Deep Sequencing for Mapping Mammalian DNA Methylation. Cold Spring Harbor Protocols. PMID 27852842 DOI: 10.1101/Pdb.Prot094862  0.499
2016 Lizardi PM, Yan Q, Wajapeyee N. Illumina Sequencing of Bisulfite-Converted DNA Libraries. Cold Spring Harbor Protocols. PMID 27852841 DOI: 10.1101/Pdb.Prot094870  0.485
2016 Lizardi PM, Yan Q, Wajapeyee N. Methyl-Cytosine-Based Immunoprecipitation for DNA Methylation Analysis. Cold Spring Harbor Protocols. PMID 27852840 DOI: 10.1101/Pdb.Prot094854  0.591
2016 Lizardi PM, Yan Q, Wajapeyee N. Analysis of DNA Methylation in Mammalian Cells. Cold Spring Harbor Protocols. PMID 27852839 DOI: 10.1101/Pdb.Top094821  0.566
2016 Lizardi PM, Yan Q, Wajapeyee N. Methylation-Specific Polymerase Chain Reaction (PCR) for Gene-Specific DNA Methylation Detection. Cold Spring Harbor Protocols. PMID 27852838 DOI: 10.1101/Pdb.Prot094847  0.532
2014 Brandsma JL, Harigopal M, Kiviat NB, Sun Y, Deng Y, Zelterman D, Lizardi PM, Shabanova VS, Levi A, Yaping T, Hu X, Feng Q. Methylation of twelve CpGs in human papillomavirus type 16 (HPV16) as an informative biomarker for the triage of women positive for HPV16 infection Cancer Prevention Research. 7: 526-533. PMID 24556390 DOI: 10.1158/1940-6207.Capr-13-0354  0.318
2012 Huang X, Narayanaswamy R, Fenn K, Szpakowski S, Sasaki C, Costa J, Blancafort P, Lizardi PM. Sequence-specific biosensors report drug-induced changes in epigenetic silencing in living cells. Dna and Cell Biology. 31: S2-10. PMID 22313050 DOI: 10.1089/Dna.2011.1537  0.676
2011 Beltran AS, Russo A, Lara H, Fan C, Lizardi PM, Blancafort P. Suppression of breast tumor growth and metastasis by an engineered transcription factor. Plos One. 6: e24595. PMID 21931769 DOI: 10.1371/Journal.Pone.0024595  0.363
2011 Lizardi PM, Forloni M, Wajapeyee N. Genome-wide approaches for cancer gene discovery. Trends in Biotechnology. 29: 558-68. PMID 21757246 DOI: 10.1016/J.Tibtech.2011.06.003  0.336
2009 Szpakowski S, Sun X, Lage JM, Dyer A, Rubinstein J, Kowalski D, Sasaki C, Costa J, Lizardi PM. Loss of epigenetic silencing in tumors preferentially affects primate-specific retroelements. Gene. 448: 151-67. PMID 19699787 DOI: 10.1016/J.Gene.2009.08.006  0.561
2009 Brandsma JL, Sun Y, Lizardi PM, Tuck DP, Zelterman D, Haines GK, Martel M, Harigopal M, Schofield K, Neapolitano M. Distinct human papillomavirus type 16 methylomes in cervical cells at different stages of premalignancy. Virology. 389: 100-7. PMID 19443004 DOI: 10.1016/J.Virol.2009.03.029  0.362
2008 Lizardi PM. Next-generation sequencing-by-hybridization. Nature Biotechnology. 26: 649-50. PMID 18536685 DOI: 10.1038/Nbt0608-649  0.331
2008 Beltran AS, Sun X, Lizardi PM, Blancafort P. Reprogramming epigenetic silencing: artificial transcription factors synergize with chromatin remodeling drugs to reactivate the tumor suppressor mammary serine protease inhibitor. Molecular Cancer Therapeutics. 7: 1080-90. PMID 18483297 DOI: 10.1158/1535-7163.Mct-07-0526  0.471
2008 Tarafa G, Tuck D, Ladner D, Topazian M, Brand R, Deters C, Moreno V, Capella G, Lynch H, Lizardi P, Costa J. Mutational load distribution analysis yields metrics reflecting genetic instability during pancreatic carcinogenesis Proceedings of the National Academy of Sciences of the United States of America. 105: 4306-4311. PMID 18337498 DOI: 10.1073/Pnas.0708250105  0.353
2006 Haab BB, Lizardi PM. RCA-enhanced protein detection arrays. Methods in Molecular Biology (Clifton, N.J.). 328: 15-29. PMID 16785639 DOI: 10.1385/1-59745-026-X:15  0.304
2005 Bindra RS, Schaffer PJ, Meng A, Woo J, Måseide K, Roth ME, Lizardi P, Hedley DW, Bristow RG, Glazer PM. Alterations in DNA repair gene expression under hypoxia: elucidating the mechanisms of hypoxia-induced genetic instability. Annals of the New York Academy of Sciences. 1059: 184-95. PMID 16382054 DOI: 10.1196/Annals.1339.049  0.44
2005 Li J, Young CS, Lizardi PM, Stern DF. In situ detection of specific DNA double strand breaks using rolling circle amplification. Cell Cycle (Georgetown, Tex.). 4: 1767-73. PMID 16294038 DOI: 10.4161/Cc.4.12.2211  0.335
2005 Huang T, Wu B, Lizardi P, Zhao H. Detection of DNA copy number alterations using penalized least squares regression. Bioinformatics (Oxford, England). 21: 3811-7. PMID 16131523 DOI: 10.1093/Bioinformatics/Bti646  0.5
2004 Bindra RS, Schaffer PJ, Meng A, Woo J, Måseide K, Roth ME, Lizardi P, Hedley DW, Bristow RG, Glazer PM. Down-regulation of Rad51 and decreased homologous recombination in hypoxic cancer cells. Molecular and Cellular Biology. 24: 8504-18. PMID 15367671 DOI: 10.1128/Mcb.24.19.8504-8518.2004  0.461
2004 Roth ME, Feng L, McConnell KJ, Schaffer PJ, Guerra CE, Affourtit JP, Piper KR, Guccione L, Hariharan J, Ford MJ, Powell SW, Krishnaswamy H, Lane J, Guccione L, Intrieri G, ... ... Lizardi PM, et al. Expression profiling using a hexamer-based universal microarray. Nature Biotechnology. 22: 418-26. PMID 15024387 DOI: 10.1038/Nbt948  0.421
2003 Magwene PM, Lizardi P, Kim J. Reconstructing the temporal ordering of biological samples using microarray data. Bioinformatics (Oxford, England). 19: 842-50. PMID 12724294 DOI: 10.1093/Bioinformatics/Btg081  0.302
2003 Lage JM, Leamon JH, Pejovic T, Hamann S, Lacey M, Dillon D, Segraves R, Vossbrinck B, González A, Pinkel D, Albertson DG, Costa J, Lizardi PM. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Research. 13: 294-307. PMID 12566408 DOI: 10.1101/Gr.377203  0.534
1998 Lizardi PM, Huang X, Zhu Z, Bray-Ward P, Thomas DC, Ward DC. Mutation detection and single-molecule counting using isothermal rolling-circle amplification. Nature Genetics. 19: 225-32. PMID 9662393 DOI: 10.1038/898  0.472
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