Year |
Citation |
Score |
2021 |
Chia M, Li C, Marques S, Pelechano V, Luscombe NM, van Werven FJ. High-resolution analysis of cell-state transitions in yeast suggests widespread transcriptional tuning by alternative starts. Genome Biology. 22: 34. PMID 33446241 DOI: 10.1186/s13059-020-02245-3 |
0.5 |
|
2020 |
Wang J, Li B, Marques S, Steinmetz LM, Wei W, Pelechano V. TIF-Seq2 disentangles overlapping isoforms in complex human transcriptomes. Nucleic Acids Research. PMID 32816037 DOI: 10.1093/Nar/Gkaa691 |
0.712 |
|
2020 |
Liang S, Ezerskyte M, Wang J, Pelechano V, Dreij K. Transcriptional mutagenesis dramatically alters genome-wide p53 transactivation landscape. Scientific Reports. 10: 13513. PMID 32782319 DOI: 10.1038/S41598-020-70412-4 |
0.409 |
|
2020 |
Wu M, Karadoulama E, Lloret-Llinares M, Rouviere JO, Vaagensø CS, Moravec M, Li B, Wang J, Wu G, Gockert M, Pelechano V, Jensen TH, Sandelin A. The RNA exosome shapes the expression of key protein-coding genes. Nucleic Acids Research. PMID 32710631 DOI: 10.1093/nar/gkaa594 |
0.543 |
|
2020 |
Thomas QA, Ard R, Liu J, Li B, Wang J, Pelechano V, Marquardt S. Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis. Nature Communications. 11: 2589. PMID 32444691 DOI: 10.1038/s41467-020-16390-7 |
0.588 |
|
2019 |
Wei W, Hennig BP, Wang J, Zhang Y, Piazza I, Pareja Sanchez Y, Chabbert CD, Adjalley SH, Steinmetz LM, Pelechano V. Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast. Genome Research. PMID 31740578 DOI: 10.1101/Gr.243378.118 |
0.706 |
|
2019 |
Garcia-Moreno M, Noerenberg M, Ni S, Järvelin AI, González-Almela E, Lenz CE, Bach-Pages M, Cox V, Avolio R, Davis T, Hester S, Sohier TJM, Li B, Heikel G, Michlewski G, ... ... Pelechano V, et al. System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Molecular Cell. PMID 30799147 DOI: 10.1016/J.Molcel.2019.01.017 |
0.362 |
|
2019 |
Nielsen M, Ard R, Leng X, Ivanov M, Kindgren P, Pelechano V, Marquardt S. Transcription-driven Chromatin repression of Intragenic transcription start sites. Plos Genetics. 15: e1007969. PMID 30707695 DOI: 10.1371/journal.pgen.1007969 |
0.52 |
|
2018 |
Gaviraghi M, Vivori C, Pareja Sanchez Y, Invernizzi F, Cattaneo A, Santoliquido BM, Frenquelli M, Segalla S, Bachi A, Doglioni C, Pelechano V, Cittaro D, Tonon G. Tumor suppressor PNRC1 blocks rRNA maturation by recruiting the decapping complex to the nucleolus. The Embo Journal. PMID 30373810 DOI: 10.15252/embj.201899179 |
0.376 |
|
2018 |
Garre E, Pelechano V, Sánchez Del Pino M, Alepuz P, Sunnerhagen P. The Lsm1-7/Pat1 complex binds to stress-activated mRNAs and modulates the response to hyperosmotic shock. Plos Genetics. 14: e1007563. PMID 30059503 DOI: 10.1371/Journal.Pgen.1007563 |
0.391 |
|
2018 |
Chabbert CD, Adjalley SH, Steinmetz LM, Pelechano V. Multiplexed ChIP-Seq Using Direct Nucleosome Barcoding: A Tool for High-Throughput Chromatin Analysis. Methods in Molecular Biology (Clifton, N.J.). 1689: 177-194. PMID 29027175 DOI: 10.1007/978-1-4939-7380-4_16 |
0.575 |
|
2017 |
Pelechano V. From transcriptional complexity to cellular phenotypes: Lessons from yeast. Yeast (Chichester, England). 34: 475-482. PMID 28866863 DOI: 10.1002/yea.3277 |
0.419 |
|
2017 |
Gómez-Herreros F, Margaritis T, Rodríguez-Galán O, Pelechano V, Begley V, Millán-Zambrano G, Morillo-Huesca M, Muñoz-Centeno MC, Pérez-Ortín JE, de la Cruz J, Holstege FCP, Chávez S. The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation. Nucleic Acids Research. PMID 28637236 DOI: 10.1093/nar/gkx529 |
0.508 |
|
2017 |
Pelechano V, Alepuz P. eIF5A facilitates translation termination globally and promotes the elongation of many non polyproline-specific tripeptide sequences. Nucleic Acids Research. 45: 7326-7338. PMID 28549188 DOI: 10.1093/nar/gkx479 |
0.404 |
|
2016 |
Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, et al. A global genetic interaction network maps a wiring diagram of cellular function. Science (New York, N.Y.). 353. PMID 27708008 DOI: 10.1126/Science.Aaf1420 |
0.49 |
|
2016 |
Chen Y, Pai AA, Herudek J, Lubas M, Meola N, Järvelin AI, Andersson R, Pelechano V, Steinmetz LM, Jensen TH, Sandelin A. Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters. Nature Genetics. PMID 27455346 DOI: 10.1038/Ng.3616 |
0.694 |
|
2016 |
Chlamydas S, Holz H, Samata M, Chelmicki T, Georgiev P, Pelechano V, Dündar F, Dasmeh P, Mittler G, Cadete FT, Ramírez F, Conrad T, Wei W, Raja S, Manke T, et al. Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation. Nature Structural & Molecular Biology. PMID 27183194 DOI: 10.1038/Nsmb.3233 |
0.65 |
|
2016 |
Garrido-Godino AI, García-López MC, García-Martínez J, Pelechano V, Medina DA, Pérez-Ortín JE, Navarro F. Rpb1 foot mutations demonstrate a major role of Rpb4 in mRNA stability during stress situations in yeast. Biochimica Et Biophysica Acta. 1859: 731-43. PMID 27001033 DOI: 10.1016/j.bbagrm.2016.03.008 |
0.474 |
|
2016 |
Adjalley SH, Chabbert CD, Klaus B, Pelechano V, Steinmetz LM. Landscape and Dynamics of Transcription Initiation in the Malaria Parasite Plasmodium falciparum. Cell Reports. PMID 26947071 DOI: 10.1016/J.Celrep.2016.02.025 |
0.658 |
|
2016 |
Pelechano V, Wei W, Steinmetz LM. Genome-wide quantification of 5'-phosphorylated mRNA degradation intermediates for analysis of ribosome dynamics. Nature Protocols. 11: 359-76. PMID 26820793 DOI: 10.1038/Nprot.2016.026 |
0.648 |
|
2016 |
Jordán-Pla A, Miguel A, Serna E, Pelechano V, Pérez-Ortín JE. Biotin-Genomic Run-On (Bio-GRO): A High-Resolution Method for the Analysis of Nascent Transcription in Yeast. Methods in Molecular Biology (Clifton, N.J.). 1361: 125-39. PMID 26483020 DOI: 10.1007/978-1-4939-3079-1_8 |
0.562 |
|
2016 |
Wilkening S, Pelechano V, Steinmetz LM. Genome-Wide Identification of Alternative Polyadenylation Events Using 3'T-Fill. Methods in Molecular Biology (Clifton, N.J.). 1358: 295-302. PMID 26463391 DOI: 10.1007/978-1-4939-3067-8_18 |
0.614 |
|
2015 |
García-Martínez J, Delgado-Ramos L, Ayala G, Pelechano V, Medina DA, Carrasco F, González R, Andrés-León E, Steinmetz L, Warringer J, Chávez S, Pérez-Ortín JE. The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons. Nucleic Acids Research. PMID 26717982 DOI: 10.1093/Nar/Gkv1512 |
0.621 |
|
2015 |
Schmid M, Olszewski P, Pelechano V, Gupta I, Steinmetz LM, Jensen TH. The Nuclear PolyA-Binding Protein Nab2p Is Essential for mRNA Production. Cell Reports. 12: 128-39. PMID 26119729 DOI: 10.1016/J.Celrep.2015.06.008 |
0.632 |
|
2015 |
Pelechano V, Wei W, Steinmetz LM. Widespread Co-translational RNA Decay Reveals Ribosome Dynamics. Cell. 161: 1400-12. PMID 26046441 DOI: 10.1016/J.Cell.2015.05.008 |
0.659 |
|
2015 |
Chabbert CD, Adjalley SH, Klaus B, Fritsch ES, Gupta I, Pelechano V, Steinmetz LM. A high-throughput ChIP-Seq for large-scale chromatin studies. Molecular Systems Biology. 11: 777. PMID 25583149 DOI: 10.15252/Msb.20145776 |
0.563 |
|
2015 |
Jordán-Pla A, Gupta I, de Miguel-Jiménez L, Steinmetz LM, Chávez S, Pelechano V, Pérez-Ortín JE. Chromatin-dependent regulation of RNA polymerases II and III activity throughout the transcription cycle. Nucleic Acids Research. 43: 787-802. PMID 25550430 DOI: 10.1093/Nar/Gku1349 |
0.688 |
|
2015 |
Velten L, Anders S, Pekowska A, Järvelin AI, Huber W, Pelechano V, Steinmetz LM. Single-cell polyadenylation site mapping reveals 3′ isoform choice variability Molecular Systems Biology. 11. DOI: 10.15252/msb.20156198 |
0.501 |
|
2014 |
Pelechano V, Wei W, Jakob P, Steinmetz LM. Genome-wide identification of transcript start and end sites by transcript isoform sequencing. Nature Protocols. 9: 1740-59. PMID 24967623 DOI: 10.1038/Nprot.2014.121 |
0.678 |
|
2014 |
Magraner-Pardo L, Pelechano V, Coloma MD, Tordera V. Dynamic remodeling of histone modifications in response to osmotic stress in Saccharomyces cerevisiae. Bmc Genomics. 15: 247. PMID 24678875 DOI: 10.1186/1471-2164-15-247 |
0.312 |
|
2014 |
Gupta I, Clauder-Münster S, Klaus B, Järvelin AI, Aiyar RS, Benes V, Wilkening S, Huber W, Pelechano V, Steinmetz LM. Alternative polyadenylation diversifies post-transcriptional regulation by selective RNA-protein interactions. Molecular Systems Biology. 10: 719. PMID 24569168 DOI: 10.1002/Msb.135068 |
0.705 |
|
2013 |
Pelechano V, Steinmetz LM. Gene regulation by antisense transcription. Nature Reviews. Genetics. 14: 880-93. PMID 24217315 DOI: 10.1038/Nrg3594 |
0.691 |
|
2013 |
Ntini E, Järvelin AI, Bornholdt J, Chen Y, Boyd M, Jørgensen M, Andersson R, Hoof I, Schein A, Andersen PR, Andersen PK, Preker P, Valen E, Zhao X, Pelechano V, et al. Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality. Nature Structural & Molecular Biology. 20: 923-8. PMID 23851456 DOI: 10.1038/Nsmb.2640 |
0.704 |
|
2013 |
Pelechano V, Wei W, Steinmetz LM. Extensive transcriptional heterogeneity revealed by isoform profiling. Nature. 497: 127-31. PMID 23615609 DOI: 10.1038/Nature12121 |
0.718 |
|
2013 |
Wilkening S, Pelechano V, Järvelin AI, Tekkedil MM, Anders S, Benes V, Steinmetz LM. An efficient method for genome-wide polyadenylation site mapping and RNA quantification. Nucleic Acids Research. 41: e65. PMID 23295673 DOI: 10.1093/Nar/Gks1249 |
0.683 |
|
2012 |
Pelechano V, Wilkening S, Järvelin AI, Tekkedil MM, Steinmetz LM. Genome-wide polyadenylation site mapping. Methods in Enzymology. 513: 271-96. PMID 22929774 DOI: 10.1016/B978-0-12-391938-0.00012-4 |
0.696 |
|
2012 |
Schmid M, Poulsen MB, Olszewski P, Pelechano V, Saguez C, Gupta I, Steinmetz LM, Moore C, Jensen TH. Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins. Molecular Cell. 47: 267-80. PMID 22683267 DOI: 10.1016/J.Molcel.2012.05.005 |
0.593 |
|
2012 |
GarcÃa-MartÃnez J, Ayala G, Pelechano V, Chávez S, Herrero E, Pérez-OrtÃn JE. The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast. Transcription. 3: 39-44. PMID 22456320 DOI: 10.4161/trns.3.1.19416 |
0.41 |
|
2011 |
García-López MC, Pelechano V, Mirón-García MC, Garrido-Godino AI, García A, Calvo O, Werner M, Pérez-Ortín JE, Navarro F. The conserved foot domain of RNA pol II associates with proteins involved in transcriptional initiation and/or early elongation. Genetics. 189: 1235-48. PMID 21954159 DOI: 10.1534/genetics.111.133215 |
0.476 |
|
2011 |
Pérez-Ortín JE, Jordán-Pla A, Pelechano V. A genomic view of mRNA turnover in yeast. Comptes Rendus Biologies. 334: 647-54. PMID 21819946 DOI: 10.1016/j.crvi.2011.05.013 |
0.457 |
|
2011 |
Wei W, Pelechano V, Järvelin AI, Steinmetz LM. Functional consequences of bidirectional promoters. Trends in Genetics : Tig. 27: 267-76. PMID 21601935 DOI: 10.1016/J.Tig.2011.04.002 |
0.661 |
|
2011 |
García-Martínez J, Pelechano V, Pérez-Ortín JE. Genomic-wide methods to evaluate transcription rates in yeast. Methods in Molecular Biology (Clifton, N.J.). 734: 25-44. PMID 21468983 DOI: 10.1007/978-1-61779-086-7_2 |
0.524 |
|
2010 |
Pelechano V, Chávez S, Pérez-Ortín JE. A complete set of nascent transcription rates for yeast genes. Plos One. 5: e15442. PMID 21103382 DOI: 10.1371/journal.pone.0015442 |
0.55 |
|
2010 |
Rodríguez-Gil A, García-Martínez J, Pelechano V, Muñoz-Centeno Mde L, Geli V, Pérez-Ortín JE, Chávez S. The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors. Nucleic Acids Research. 38: 4651-64. PMID 20385590 DOI: 10.1093/nar/gkq215 |
0.473 |
|
2010 |
Pelechano V, Pérez-Ortín JE. There is a steady-state transcriptome in exponentially growing yeast cells. Yeast (Chichester, England). 27: 413-22. PMID 20301094 DOI: 10.1002/yea.1768 |
0.36 |
|
2009 |
Pelechano V, Jimeno-González S, Rodríguez-Gil A, García-Martínez J, Pérez-Ortín JE, Chávez S. Regulon-specific control of transcription elongation across the yeast genome. Plos Genetics. 5: e1000614. PMID 19696888 DOI: 10.1371/journal.pgen.1000614 |
0.514 |
|
2008 |
Pelechano V, Pérez-Ortín JE. The transcriptional inhibitor thiolutin blocks mRNA degradation in yeast. Yeast (Chichester, England). 25: 85-92. PMID 17914747 DOI: 10.1002/YEA.1548 |
0.366 |
|
2006 |
Pelechano V, García-Martínez J, Pérez-Ortín JE. A genomic study of the inter-ORF distances in Saccharomyces cerevisiae. Yeast (Chichester, England). 23: 689-99. PMID 16845687 DOI: 10.1002/YEA.1390 |
0.427 |
|
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