C. Cheng Kao - Publications

Affiliations: 
Indiana University, Bloomington, Bloomington, IN, United States 

154 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sung PY, Zhou Y, Kao CC, Aburigh AA, Routh A, Roy P. A multidisciplinary approach to the identification of the protein-RNA connectome in double-stranded RNA virus capsids. Nucleic Acids Research. PMID 37070191 DOI: 10.1093/nar/gkad274  0.438
2018 Sung PY, Vaughan R, Rahman SK, Yi G, Kerviel A, Kao CC, Roy P. Bluetongue virus VP6 and genomic RNA interaction is essential for genome packaging. Journal of Virology. PMID 30541863 DOI: 10.1128/Jvi.02023-18  0.5
2018 Shakeel S, Evans JD, Hazelbaker M, Kao CC, Vaughan RC, Butcher SJ. Intrinsically-disordered N-termini in human parechovirus 1 capsid proteins bind encapsidated RNA. Scientific Reports. 8: 5820. PMID 29643409 DOI: 10.1038/S41598-018-23552-7  0.542
2018 Subba-Reddy CV, Goodfellow I, Kao CC. Correction for Subba-Reddy et al., "VPg-Primed RNA Synthesis of Norovirus RNA-Dependent RNA Polymerases by Using a Novel Cell-Based Assay". Journal of Virology. 92. PMID 29242253 DOI: 10.1128/Jvi.01706-17  0.492
2017 Subba-Reddy CV, Yunus MA, Goodfellow IG, Kao CC. Retraction for Subba-Reddy et al., "Norovirus RNA Synthesis Is Modulated by an Interaction between the Viral RNA-Dependent RNA Polymerase and the Major Capsid Protein, VP1". Journal of Virology. 91. PMID 29191989 DOI: 10.1128/Jvi.01708-17  0.518
2017 Jacobs A, Hoover H, Smith E, Clemmer DE, Kim CH, Kao CC. The intrinsically disordered N-terminal arm of the brome mosaic virus coat protein specifically recognizes the RNA motif that directs the initiation of viral RNA replication. Nucleic Acids Research. PMID 29140480 DOI: 10.1093/Nar/Gkx1087  0.539
2017 Deng X, Hackbart M, Mettelman RC, O'Brien A, Mielech AM, Yi G, Kao CC, Baker SC. Coronavirus nonstructural protein 15 mediates evasion of dsRNA sensors and limits apoptosis in macrophages. Proceedings of the National Academy of Sciences of the United States of America. PMID 28484023 DOI: 10.1073/Pnas.1618310114  0.406
2017 Zhao B, Yi G, Du F, Chuang YC, Vaughan RC, Sankaran B, Kao CC, Li P. Structure and function of the Zika virus full-length NS5 protein. Nature Communications. 8: 14762. PMID 28345656 DOI: 10.1038/Ncomms14762  0.536
2016 Deval J, Jin Z, Chuang YC, Kao CC. Structure(s), Function(s), and Inhibition of the RNA-Dependent RNA Polymerase of Noroviruses. Virus Research. PMID 28041960 DOI: 10.1016/J.Virusres.2016.12.018  0.493
2016 Hoover HS, Wang JC, Middleton S, Ni P, Zlotnick A, Vaughan RC, Kao CC. Phosphorylation of the Brome Mosaic Virus Capsid Regulates the Timing of Viral Infection. Journal of Virology. 90: 7748-60. PMID 27334588 DOI: 10.1128/Jvi.00833-16  0.548
2016 Kao CC, Yi G, Huang HC. The core of hepatitis C virus pathogenesis. Current Opinion in Virology. 17: 66-73. PMID 26851516 DOI: 10.1016/J.Coviro.2016.01.009  0.333
2016 Hoover HS, Kao CC. Phosphorylation of the viral coat protein regulates RNA virus infection Virus Adaptation and Treatment. 8: 13-20. DOI: 10.2147/Vaat.S118440  0.451
2015 Yi G, Wen Y, Shu C, Han Q, Konan KV, Li P, Kao CC. The Hepatitis C Virus NS4B Can Suppress STING Accumulation to Evade Innate Immune Responses. Journal of Virology. PMID 26468527 DOI: 10.1128/Jvi.01720-15  0.361
2015 Jin Z, Tucker K, Lin X, Kao CC, Shaw K, Tan H, Symons J, Behera I, Rajwanshi VK, Dyatkina N, Wang G, Beigelman L, Deval J. Biochemical Evaluation of the Inhibition Properties of Favipiravir (T-705) and 2' -C-methyl-cytidine Triphosphates against Human and Mouse Norovirus RNA Polymerases. Antimicrobial Agents and Chemotherapy. PMID 26392512 DOI: 10.1128/Aac.01391-15  0.463
2015 Fan B, Sutandy FX, Syu GD, Middleton S, Yi G, Lu KY, Chen CS, Kao CC. Heterogeneous ribonucleoprotein K (hnRNP K) binds miR-122, a mature liver-specific microRNA required for hepatitis C virus replication. Molecular & Cellular Proteomics : McP. PMID 26330540 DOI: 10.1074/Mcp.M115.050344  0.325
2015 Tsvetkova IB, Yi G, Yi Y, Kao CC, Dragnea BG. Segmented GFP-like aptamer probes for functional imaging of viral genome trafficking. Virus Research. 210: 291-297. PMID 26325297 DOI: 10.1016/j.virusres.2015.08.023  0.333
2015 Kitayama M, Hoover H, Middleton S, Kao CC. Brome mosaic virus Infection of Rice Results in Decreased Accumulation of RNA1. Molecular Plant-Microbe Interactions : Mpmi. 28: 626-32. PMID 26024443 DOI: 10.1094/Mpmi-12-14-0389-R  0.536
2015 Vaughan RC, Kao CC. Mapping protein-RNA interactions by RCAP, RNA-cross-linking and peptide fingerprinting. Methods in Molecular Biology (Clifton, N.J.). 1297: 225-36. PMID 25896007 DOI: 10.1007/978-1-4939-2562-9_16  0.499
2015 Fan B, Ni P, Kao CC. Mapping RNA interactions to proteins in virions using CLIP-Seq. Methods in Molecular Biology (Clifton, N.J.). 1297: 213-24. PMID 25896006 DOI: 10.1007/978-1-4939-2562-9_15  0.54
2015 Wen Y, Lin X, Fan B, Ranjith-Kumar CT, Kao CC. The juxtamembrane sequence of the Hepatitis C virus polymerase can affect RNA synthesis and inhibition by allosteric polymerase inhibitors. Virus Genes. PMID 25895103 DOI: 10.1007/s11262-015-1199-4  0.393
2015 Lin X, Thorne L, Jin Z, Hammad LA, Li S, Deval J, Goodfellow IG, Kao CC. Subgenomic promoter recognition by the norovirus RNA-dependent RNA polymerases. Nucleic Acids Research. 43: 446-60. PMID 25520198 DOI: 10.1093/Nar/Gku1292  0.549
2015 Yunus MA, Lin X, Bailey D, Karakasiliotis I, Chaudhry Y, Vashist S, Zhang G, Thorne L, Kao CC, Goodfellow I. The murine norovirus core subgenomic RNA promoter consists of a stable stem-loop that can direct accurate initiation of RNA synthesis. Journal of Virology. 89: 1218-29. PMID 25392209 DOI: 10.1128/Jvi.02432-14  0.534
2014 Kao CC, Chuang E, Ford J, Huang J, Podicheti R, Rusch DB. Mapping RNA Sequences that Contact Viral Capsid Proteins in Virions. Bio-Protocol. 7. PMID 29082288 DOI: 10.21769/BioProtoc.2398  0.387
2014 Singh D, Vaughan R, Kao CC. LL-37 peptide enhancement of signal transduction by Toll-like receptor 3 is regulated by pH: identification of a peptide antagonist of LL-37. The Journal of Biological Chemistry. 289: 27614-24. PMID 25092290 DOI: 10.1074/Jbc.M114.582973  0.302
2014 Yamane D, McGivern DR, Wauthier E, Yi M, Madden VJ, Welsch C, Antes I, Wen Y, Chugh PE, McGee CE, Widman DG, Misumi I, Bandyopadhyay S, Kim S, Shimakami T, ... ... Kao CC, et al. Regulation of the hepatitis C virus RNA replicase by endogenous lipid peroxidation. Nature Medicine. 20: 927-35. PMID 25064127 DOI: 10.1038/Nm.3610  0.378
2014 Wen Y, Kao CC. The hepatitis C virus core protein can modulate RNA-dependent RNA synthesis by the 2a polymerase. Virus Research. 189: 165-176. PMID 24874198 DOI: 10.1016/J.Virusres.2014.05.017  0.47
2014 Li W, Zhang Y, Kao CC. The classic swine fever virus (CSFV) core protein can enhance de novo-initiated RNA synthesis by the CSFV polymerase NS5B. Virus Genes. 49: 106-15. PMID 24824302 DOI: 10.1007/s11262-014-1080-x  0.455
2014 Vaughan R, Tragesser B, Ni P, Ma X, Dragnea B, Kao CC. The tripartite virions of the brome mosaic virus have distinct physical properties that affect the timing of the infection process. Journal of Virology. 88: 6483-91. PMID 24672042 DOI: 10.1128/Jvi.00377-14  0.533
2014 Zhao H, Yang Y, Janga SC, Kao CC, Zhou Y. Prediction and validation of the unexplored RNA-binding protein atlas of the human proteome. Proteins. 82: 640-7. PMID 24123256 DOI: 10.1002/Prot.24441  0.313
2014 Fan B, Lu KY, Reymond Sutandy FX, Chen YW, Konan K, Zhu H, Kao CC, Chen CS. A human proteome microarray identifies that the heterogeneous nuclear ribonucleoprotein K (hnRNP K) recognizes the 5' terminal sequence of the hepatitis C virus RNA. Molecular & Cellular Proteomics : McP. 13: 84-92. PMID 24113282 DOI: 10.1074/Mcp.M113.031682  0.43
2014 Ni P, Vaughan RC, Tragesser B, Hoover H, Kao CC. The plant host can affect the encapsidation of brome mosaic virus (BMV) RNA: BMV virions are surprisingly heterogeneous. Journal of Molecular Biology. 426: 1061-76. PMID 24036424 DOI: 10.1016/J.Jmb.2013.09.007  0.542
2014 Das NC, Warren GT, Kao CC, Dragnea BG, Ni P, Sokol PE. Small angle scattering study of the structure and organization of RNAs and protein of Brome Mosaic Virus (BMV) capsid protein Physics Procedia. 60: 101-109. DOI: 10.1016/J.Phpro.2014.11.016  0.497
2013 Ni P, Kao CC. Non-encapsidation activities of the capsid proteins of positive-strand RNA viruses. Virology. 446: 123-132. PMID 24074574 DOI: 10.1016/J.Virol.2013.07.023  0.531
2013 Park IW, Ndjomou J, Wen Y, Liu Z, Ridgway ND, Kao CC, He JJ. Inhibition of HCV replication by oxysterol-binding protein-related protein 4 (ORP4) through interaction with HCV NS5B and alteration of lipid droplet formation. Plos One. 8: e75648. PMID 24069433 DOI: 10.1371/Journal.Pone.0075648  0.362
2013 Leen EN, Kwok KY, Birtley JR, Simpson PJ, Subba-Reddy CV, Chaudhry Y, Sosnovtsev SV, Green KY, Prater SN, Tong M, Young JC, Chung LM, Marchant J, Roberts LO, Kao CC, et al. Structures of the compact helical core domains of feline calicivirus and murine norovirus VPg proteins. Journal of Virology. 87: 5318-30. PMID 23487472 DOI: 10.1128/Jvi.03151-12  0.359
2013 Singh D, Qi R, Jordan JL, San Mateo L, Kao CC. The human antimicrobial peptide LL-37, but not the mouse ortholog, mCRAMP, can stimulate signaling by poly(I:C) through a FPRL1-dependent pathway. The Journal of Biological Chemistry. 288: 8258-68. PMID 23386607 DOI: 10.1074/Jbc.M112.440883  0.3
2012 Qi R, Singh D, Kao CC. Proteolytic processing regulates Toll-like receptor 3 stability and endosomal localization. The Journal of Biological Chemistry. 287: 32617-29. PMID 22865861 DOI: 10.1074/Jbc.M112.387803  0.311
2012 Vaughan R, Li Y, Fan B, Ranjith-Kumar CT, Kao CC. RNA binding by the NS3 protease of the hepatitis C virus. Virus Research. 169: 80-90. PMID 22814430 DOI: 10.1016/J.Virusres.2012.07.007  0.487
2012 Subba-Reddy CV, Yunus MA, Goodfellow IG, Kao CC. Norovirus RNA synthesis is modulated by an interaction between the viral RNA-dependent RNA polymerase and the major capsid protein, VP1. Journal of Virology. 86: 10138-49. PMID 22787222 DOI: 10.1128/Jvi.01208-12  0.566
2012 Vaughan R, Fan B, You JS, Kao CC. Identification and functional characterization of the nascent RNA contacting residues of the hepatitis C virus RNA-dependent RNA polymerase. Rna (New York, N.Y.). 18: 1541-52. PMID 22736798 DOI: 10.1261/Rna.031914.111  0.534
2012 Ni P, Wang Z, Ma X, Das NC, Sokol P, Chiu W, Dragnea B, Hagan M, Kao CC. An examination of the electrostatic interactions between the N-terminal tail of the Brome Mosaic Virus coat protein and encapsidated RNAs. Journal of Molecular Biology. 419: 284-300. PMID 22472420 DOI: 10.1016/J.Jmb.2012.03.023  0.54
2012 Subba-Reddy CV, Tragesser B, Xu Z, Stein B, Ranjith-Kumar CT, Kao CC. RNA synthesis by the brome mosaic virus RNA-dependent RNA polymerase in human cells reveals requirements for de novo initiation and protein-protein interaction. Journal of Virology. 86: 4317-27. PMID 22318148 DOI: 10.1128/Jvi.00069-12  0.468
2012 Bhardwaj K, Liu P, Leibowitz JL, Kao CC. The coronavirus endoribonuclease Nsp15 interacts with retinoblastoma tumor suppressor protein. Journal of Virology. 86: 4294-304. PMID 22301153 DOI: 10.1128/Jvi.07012-11  0.4
2012 Yi G, Deval J, Fan B, Cai H, Soulard C, Ranjith-Kumar CT, Smith DB, Blatt L, Beigelman L, Kao CC. Biochemical study of the comparative inhibition of hepatitis C virus RNA polymerase by VX-222 and filibuvir. Antimicrobial Agents and Chemotherapy. 56: 830-7. PMID 22143520 DOI: 10.1128/Aac.05438-11  0.491
2012 Sivakumaran K, Kao CC. Genomic plus-strand RNA synthesis by the brome mosaic virus (BMV) RNA replicase requires a sequence that is complementary to the binding site of the BMV helicase-like protein. Molecular Plant Pathology. 1: 337-46. PMID 20572981 DOI: 10.1046/j.1364-3703.2000.00037.x  0.459
2012 Kao CC. Lessons learned from the core RNA promoters of Brome mosaic virus and Cucumber mosaic virus. Molecular Plant Pathology. 3: 53-9. PMID 20569308 DOI: 10.1046/j.1464-6722.2001.00090.x  0.434
2012 Sivakumaran K, Chen MH, Roossinck MJ, Kao CC. Core promoter for initiation of Cucumber mosaic virus subgenomic RNA4A. Molecular Plant Pathology. 3: 43-52. PMID 20569307 DOI: 10.1046/j.1464-6722.2001.00089.x  0.345
2012 Vaughan R, Running W, Qi R, Kao CC. Mapping protein–RNA interactions Virus Adaptation and Treatment. 4: 29-41. DOI: 10.2147/Vaat.S31299  0.451
2012 Tsvetkova I, Chen C, Rana S, Kao CC, Rotello VM, Dragnea B. Pathway switching in templated virus-like particle assembly Soft Matter. 8: 4571-4577. DOI: 10.1039/C2Sm00024E  0.303
2012 Kao CC, Fan B, Chinnaswamy S, Cai H, Ranjith-Kumar CT, Deval J. Assays for RNA synthesis and replication by the hepatitis C virus Frontiers of Biology in China. 7: 233-245. DOI: 10.1007/S11515-012-1188-0  0.434
2011 Lai Y, Adhikarakunnathu S, Bhardwaj K, Ranjith-Kumar CT, Wen Y, Jordan JL, Wu LH, Dragnea B, San Mateo L, Kao CC. LL37 and cationic peptides enhance TLR3 signaling by viral double-stranded RNAs. Plos One. 6: e26632. PMID 22039520 DOI: 10.1371/Journal.Pone.0026632  0.321
2011 Lai Y, Yi G, Chen A, Bhardwaj K, Tragesser BJ, Rodrigo A Valverde, Zlotnick A, Mukhopadhyay S, Ranjith-Kumar CT, Kao CC. Viral double-strand RNA-binding proteins can enhance innate immune signaling by toll-like Receptor 3. Plos One. 6: e25837. PMID 22016778 DOI: 10.1371/Journal.Pone.0025837  0.485
2011 Subba-Reddy CV, Goodfellow I, Kao CC. VPg-Primed RNA Synthesis of Norovirus RNA-Dependent RNA Polymerases by Using a Novel Cell-Based Assay Journal of Virology. 85: 13027-13037. PMID 21994457 DOI: 10.1128/Jvi.06191-11  0.537
2011 Kao CC, Ni P, Hema M, Huang X, Dragnea B. The coat protein leads the way: an update on basic and applied studies with the Brome mosaic virus coat protein. Molecular Plant Pathology. 12: 403-12. PMID 21453435 DOI: 10.1111/J.1364-3703.2010.00678.X  0.545
2011 Qi X, Droste T, Kao CC. Cell-penetrating peptides derived from viral capsid proteins Molecular Plant-Microbe Interactions. 24: 25-36. PMID 21138375 DOI: 10.1094/MPMI-07-10-0147  0.36
2011 Lu C, Ranjith-Kumar CT, Hao L, Kao CC, Li P. Crystal structure of RIG-I C-terminal domain bound to blunt-ended double-strand RNA without 5' triphosphate. Nucleic Acids Research. 39: 1565-75. PMID 20961956 DOI: 10.1093/Nar/Gkq974  0.507
2010 Hwang J, Huang L, Cordek DG, Vaughan R, Reynolds SL, Kihara G, Raney KD, Kao CC, Cameron CE. Hepatitis C virus nonstructural protein 5A: biochemical characterization of a novel structural class of RNA-binding proteins. Journal of Virology. 84: 12480-91. PMID 20926572 DOI: 10.1128/Jvi.01319-10  0.525
2010 Hema M, Murali A, Ni P, Vaughan RC, Fujisaki K, Tsvetkova I, Dragnea B, Kao CC. Effects of amino-acid substitutions in the Brome mosaic virus capsid protein on RNA encapsidation. Molecular Plant-Microbe Interactions : Mpmi. 23: 1433-47. PMID 20923351 DOI: 10.1094/Mpmi-05-10-0118  0.55
2010 Lu C, Xu H, Ranjith-Kumar CT, Brooks MT, Hou TY, Hu F, Herr AB, Strong RK, Kao CC, Li P. The structural basis of 5' triphosphate double-stranded RNA recognition by RIG-I C-terminal domain. Structure (London, England : 1993). 18: 1032-43. PMID 20637642 DOI: 10.1016/J.Str.2010.05.007  0.527
2010 Chinnaswamy S, Murali A, Li P, Fujisaki K, Kao CC. Regulation of de novo-initiated RNA synthesis in hepatitis C virus RNA-dependent RNA polymerase by intermolecular interactions. Journal of Virology. 84: 5923-35. PMID 20375156 DOI: 10.1128/Jvi.02446-09  0.568
2010 Chinnaswamy S, Cai H, Kao C. An update on small molecule inhibitors of the HCV NS5B polymerase: effects on RNA synthesis in vitro and in cultured cells, and potential resistance in viral quasispecies Virus Adaptation and Treatment. 2: 73-89. DOI: 10.2147/Vaat.S9641  0.426
2010 Ortiz-Alcantara J, Bhardwaj K, Palaninathan S, Frieman M, Baric RS, Kao CC. Small molecule inhibitors of the SARS-CoV Nsp15 endoribonuclease Virus Adaptation and Treatment. 2: 125-133. DOI: 10.2147/Vaat.S12733  0.393
2009 Liu Z, Robida JM, Chinnaswamy S, Yi G, Robotham JM, Nelson HB, Irsigler A, Kao CC, Tang H. Mutations in the hepatitis C virus polymerase that increase RNA binding can confer resistance to cyclosporine A. Hepatology (Baltimore, Md.). 50: 25-33. PMID 19489073 DOI: 10.1002/Hep.22987  0.389
2009 Yi G, Vaughan RC, Yarbrough I, Dharmaiah S, Kao CC. RNA binding by the brome mosaic virus capsid protein and the regulation of viral RNA accumulation. Journal of Molecular Biology. 391: 314-326. PMID 19481091 DOI: 10.1016/J.Jmb.2009.05.065  0.554
2009 McGivern DR, Villanueva RA, Chinnaswamy S, Kao CC, Lemon SM. Impaired replication of hepatitis C virus containing mutations in a conserved NS5B retinoblastoma protein-binding motif. Journal of Virology. 83: 7422-33. PMID 19458004 DOI: 10.1128/Jvi.00262-09  0.401
2009 Li X, Ranjith-Kumar CT, Brooks MT, Dharmaiah S, Herr AB, Kao C, Li P. The RIG-I-like receptor LGP2 recognizes the termini of double-stranded RNA. The Journal of Biological Chemistry. 284: 13881-91. PMID 19278996 DOI: 10.1074/Jbc.M900818200  0.361
2009 Yi G, Letteney E, Kim C, Kao CC. Brome mosaic virus capsid protein regulates accumulation of viral replication proteins by binding to the replicase assembly RNA element Rna. 15: 615-626. PMID 19237464 DOI: 10.1261/Rna.1375509  0.569
2009 Aniagyei SE, Kennedy CJ, Stein B, Willits DA, Douglas T, Young MJ, De M, Rotello VM, Srisathiyanarayanan D, Kao CC, Dragnea B. Synergistic effects of mutations and nanoparticle templating in the self-assembly of cowpea chlorotic mottle virus capsids. Nano Letters. 9: 393-8. PMID 19090695 DOI: 10.1021/Nl8032476  0.301
2009 Ranjith-Kumar CT, Murali A, Dong W, Srisathiyanarayanan D, Vaughan R, Ortiz-Alacantara J, Bhardwaj K, Li X, Li P, Kao CC. Agonist and antagonist recognition by RIG-I, a cytoplasmic innate immunity receptor. The Journal of Biological Chemistry. 284: 1155-65. PMID 19019822 DOI: 10.1074/Jbc.M806219200  0.312
2009 Yi G, Kao CC. Brome mosaic virus RNA replication and transcription Viral Genome Replication. 89-108. DOI: 10.1007/b135974_5  0.363
2008 Aniagyei SE, Dufort C, Kao CC, Dragnea B. Self-assembly approaches to nanomaterial encapsulation in viral protein cages. Journal of Materials Chemistry. 18: 3763-3774. PMID 19809586 DOI: 10.1039/B805874C  0.311
2008 Ranjith-Kumar CT, Duffy KE, Jordan JL, Eaton-Bassiri A, Vaughan R, Hoose SA, Lamb RJ, Sarisky RT, Kao CC. Single-stranded oligonucleotides can inhibit cytokine production induced by human toll-like receptor 3. Molecular and Cellular Biology. 28: 4507-19. PMID 18490443 DOI: 10.1128/Mcb.00308-08  0.311
2008 Chinnaswamy S, Yarbrough I, Palaninathan S, Kumar CT, Vijayaraghavan V, Demeler B, Lemon SM, Sacchettini JC, Kao CC. A locking mechanism regulates RNA synthesis and host protein interaction by the hepatitis C virus polymerase. The Journal of Biological Chemistry. 283: 20535-46. PMID 18442978 DOI: 10.1074/Jbc.M801490200  0.537
2008 Murali A, Li X, Ranjith-Kumar CT, Bhardwaj K, Holzenburg A, Li P, Kao CC. Structure and function of LGP2, a DEX(D/H) helicase that regulates the innate immunity response. The Journal of Biological Chemistry. 283: 15825-33. PMID 18411269 DOI: 10.1074/Jbc.M800542200  0.385
2008 Yi G, Kao CC. cis- and trans-Acting Functions of Brome Mosaic Virus Protein 1a in Genomic RNA1 Replication Journal of Virology. 82: 3045-3053. PMID 18160434 DOI: 10.1128/Jvi.02390-07  0.54
2008 Bhardwaj K, Palaninathan S, Alcantara JM, Yi LL, Guarino L, Sacchettini JC, Kao CC. Structural and functional analyses of the severe acute respiratory syndrome coronavirus endoribonuclease Nsp15. The Journal of Biological Chemistry. 283: 3655-64. PMID 18045871 DOI: 10.1074/Jbc.M708375200  0.508
2007 Kang H, Bhardwaj K, Li Y, Palaninathan S, Sacchettini J, Guarino L, Leibowitz JL, Kao CC. Biochemical and genetic analyses of murine hepatitis virus Nsp15 endoribonuclease. Journal of Virology. 81: 13587-97. PMID 17898055 DOI: 10.1128/Jvi.00547-07  0.422
2007 Gopinath K, Kao CC. Replication-independent long-distance trafficking by viral RNAs in Nicotiana benthamiana Plant Cell. 19: 1179-1191. PMID 17416731 DOI: 10.1105/Tpc.107.050088  0.528
2007 Zhu J, Gopinath K, Murali A, Yi G, Hayward SD, Zhu H, Kao C. RNA-binding proteins that inhibit RNA virus infection. Proceedings of the National Academy of Sciences of the United States of America. 104: 3129-34. PMID 17360619 DOI: 10.1073/Pnas.0611617104  0.468
2007 Sun J, DuFort C, Daniel MC, Murali A, Chen C, Gopinath K, Stein B, De M, Rotello VM, Holzenburg A, Kao CC, Dragnea B. Core-controlled polymorphism in virus-like particles. Proceedings of the National Academy of Sciences of the United States of America. 104: 1354-9. PMID 17227841 DOI: 10.1073/Pnas.0610542104  0.312
2007 Ranjith-Kumar CT, Miller W, Xiong J, Russell WK, Lamb R, Santos J, Duffy KE, Cleveland L, Park M, Bhardwaj K, Wu Z, Russell DH, Sarisky RT, Mbow ML, Kao CC. Biochemical and functional analyses of the human Toll-like receptor 3 ectodomain. The Journal of Biological Chemistry. 282: 7668-78. PMID 17209042 DOI: 10.1074/Jbc.M610946200  0.361
2007 Yi G, Gopinath K, Kao CC. Selective repression of translation by the brome mosaic virus 1a RNA replication protein Journal of Virology. 81: 1601-1609. PMID 17108036 DOI: 10.1128/Jvi.01991-06  0.555
2006 Bhardwaj K, Sun J, Holzenburg A, Guarino LA, Kao CC. RNA recognition and cleavage by the SARS coronavirus endoribonuclease. Journal of Molecular Biology. 361: 243-56. PMID 16828802 DOI: 10.1016/J.Jmb.2006.06.021  0.536
2006 Chen C, Daniel MC, Quinkert ZT, De M, Stein B, Bowman VD, Chipman PR, Rotello VM, Kao CC, Dragnea B. Nanoparticle-templated assembly of viral protein cages. Nano Letters. 6: 611-5. PMID 16608253 DOI: 10.1021/Nl0600878  0.318
2006 Ranjith-Kumar CT, Kao CC. Recombinant viral RdRps can initiate RNA synthesis from circular templates Rna. 12: 303-312. PMID 16373481 DOI: 10.1261/rna.2163106  0.46
2005 Chen C, Kwak ES, Stein B, Kao CC, Dragnea B. Packaging of gold particles in viral capsids. Journal of Nanoscience and Nanotechnology. 5: 2029-33. PMID 16430136 DOI: 10.1166/Jnn.2005.506  0.325
2005 Gopinath K, Dragnea B, Kao C. Interaction between brome mosaic virus proteins and RNAs: Effects on RNA replication, protein expression, and RNA stability Journal of Virology. 79: 14222-14234. PMID 16254357 DOI: 10.1128/Jvi.79.22.14222-14234.2005  0.473
2005 Kim YC, Russell WK, Ranjith-Kumar CT, Thomson M, Russell DH, Kao CC. Functional analysis of RNA binding by the hepatitis C virus RNA-dependent RNA polymerase. The Journal of Biological Chemistry. 280: 38011-9. PMID 16166071 DOI: 10.1074/Jbc.M508145200  0.442
2005 Picard D, Kao CC, Hudak KA. Pokeweed antiviral protein inhibits brome mosaic virus replication in plant cells Journal of Biological Chemistry. 280: 20069-20075. PMID 15764597 DOI: 10.1074/jbc.M413452200  0.469
2005 Hema M, Gopinath K, Kao C. Repair of the tRNA-like CCA sequence in a multipartite positive-strand RNA virus. Journal of Virology. 79: 1417-27. PMID 15650168 DOI: 10.1128/JVI.79.3.1417-1427.2005  0.447
2004 Choi SK, Hema M, Gopinath K, Santos J, Kao C. Replicase-binding sites on plus- and minus-strand brome mosaic virus RNAs and their roles in RNA replication in plant cells. Journal of Virology. 78: 13420-9. PMID 15564452 DOI: 10.1128/JVI.78.24.13420-13429.2004  0.456
2004 Bhardwaj K, Guarino L, Kao CC. The severe acute respiratory syndrome coronavirus Nsp15 protein is an endoribonuclease that prefers manganese as a cofactor. Journal of Virology. 78: 12218-24. PMID 15507608 DOI: 10.1128/Jvi.78.22.12218-12224.2004  0.391
2004 Ranjith-Kumar CT, Sarisky RT, Gutshall L, Thomson M, Kao CC. De novo initiation pocket mutations have multiple effects on hepatitis C virus RNA-dependent RNA polymerase activities. Journal of Virology. 78: 12207-17. PMID 15507607 DOI: 10.1128/JVI.78.22.12207-12217.2004  0.364
2004 Sivakumaran K, Choi SK, Hema M, Kao CC. Requirements for brome mosaic virus subgenomic RNA synthesis in vivo and replicase-core promoter interactions in vitro Journal of Virology. 78: 6091-6101. PMID 15163702 DOI: 10.1128/Jvi.78.12.6091-6101.2004  0.524
2004 Hema M, Kao CC. Template Sequence near the Initiation Nucleotide Can Modulate Brome Mosaic Virus RNA Accumulation in Plant Protoplasts Journal of Virology. 78: 1169-1180. PMID 14722272 DOI: 10.1128/Jvi.78.3.1169-1180.2004  0.529
2003 Ranjith-Kumar CT, Santos JL, Gutshall LL, Johnston VK, Lin-Goerke J, Kim MJ, Porter DJ, Maley D, Greenwood C, Earnshaw DL, Baker A, Gu B, Silverman C, Sarisky RT, Kao C. Enzymatic activities of the GB virus-B RNA-dependent RNA polymerase. Virology. 312: 270-80. PMID 12919733 DOI: 10.1016/S0042-6822(03)00247-2  0.398
2003 Ranjith-Kumar CT, Gutshall L, Sarisky RT, Kao CC. Multiple interactions within the hepatitis C virus RNA polymerase repress primer-dependent RNA synthesis. Journal of Molecular Biology. 330: 675-685. PMID 12850139 DOI: 10.1016/S0022-2836(03)00613-2  0.48
2003 Sivakumaran K, Hema M, Kao CC. Brome mosaic virus RNA syntheses in vitro and in barley protoplasts Journal of Virology. 77: 5703-5711. PMID 12719563 DOI: 10.1128/Jvi.77.10.5703-5711.2003  0.548
2003 Zhang X, Kim CH, Sivakumaran K, Kao C. Stable RNA structures can repress RNA synthesis in vitro by the brome mosaic virus replicase Rna. 9: 555-565. PMID 12702814 DOI: 10.1261/rna.2190803  0.451
2003 Gu B, Johnston VK, Gutshall LL, Nguyen TT, Gontarek RR, Darcy MG, Tedesco R, Dhanak D, Duffy KJ, Kao CC, Sarisky RT. Arresting initiation of hepatitis C virus RNA synthesis using heterocyclic derivatives. The Journal of Biological Chemistry. 278: 16602-7. PMID 12554734 DOI: 10.1074/Jbc.M210891200  0.361
2003 Ranjith-Kumar CT, Zhang X, Kao CC. Enhancer-like activity of a brome mosaic virus RNA promoter Journal of Virology. 77: 1830-1839. PMID 12525617 DOI: 10.1128/Jvi.77.3.1830-1839.2003  0.539
2003 Kim C, Kao CC. A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine. Rna. 7: 1476-1485. DOI: 10.2210/Pdb1Jzc/Pdb  0.509
2002 Ranjith-Kumar CT, Gutshall L, Kim M, Sarisky RT, Kao CC. Requirements for De Novo Initiation of RNA Synthesis by Recombinant Flaviviral RNA-Dependent RNA Polymerases Journal of Virology. 76: 12526-12536. PMID 12438578 DOI: 10.1128/Jvi.76.24.12526-12536.2002  0.541
2002 Ranjith-Kumar CT, Kim YC, Gutshall L, Silverman C, Khandekar S, Sarisky RT, Kao CC. Mechanism of de novo initiation by the hepatitis C virus RNA-dependent RNA polymerase: role of divalent metals. Journal of Virology. 76: 12513-25. PMID 12438577 DOI: 10.1128/Jvi.76.24.12513-12525.2002  0.487
2002 Kao CC. Lessons learned from the core RNA promoters of Brome mosaic virus and Cucumber mosaic virus Molecular Plant Pathology. 3: 53-59. DOI: 10.1046/J.1464-6722.2001.00090.X  0.524
2002 Sivakumaran K, Chen MH, Roossinck MJ, Kao CC. Core promoter for initiation of Cucumber mosaic virus subgenomic RNA4A Molecular Plant Pathology. 3: 43-52. DOI: 10.1046/J.1464-6722.2001.00089.X  0.45
2001 Kim CH, Kao CC. A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine. Rna (New York, N.Y.). 7: 1476-85. PMID 11680852  0.41
2001 Kao CC, Singh P, Ecker DJ. De novo initiation of viral RNA-dependent RNA synthesis Virology. 287: 251-260. PMID 11531403 DOI: 10.1006/Viro.2001.1039  0.539
2001 Tayon R, Kim M, Kao CC. Completion of RNA synthesis by viral RNA replicases Nucleic Acids Research. 29: 3576-3582. PMID 11522827 DOI: 10.1093/Nar/29.17.3576  0.54
2001 Ranjith-Kumar CT, Gajewski J, Gutshall L, Maley D, Sarisky RT, Kao CC. Terminal Nucleotidyl Transferase Activity of Recombinant Flaviviridae RNA-Dependent RNA Polymerases: Implication for Viral RNA Synthesis Journal of Virology. 75: 8615-8623. PMID 11507207 DOI: 10.1128/Jvi.75.18.8615-8623.2001  0.543
2001 Kim MJ, Kao C. Factors regulating template switch in vitro by viral RNA-dependent RNA polymerases: implications for RNA-RNA recombination. Proceedings of the National Academy of Sciences of the United States of America. 98: 4972-7. PMID 11309487 DOI: 10.1073/pnas.081077198  0.461
2001 Kao C, Rüdisser S, Zheng M. A simple and efficient method to transcribe RNAs with reduced 3' heterogeneity. Methods (San Diego, Calif.). 23: 201-5. PMID 11243833 DOI: 10.1006/meth.2000.1131  0.357
2000 Kao CC, Sivakumaran K. Brome mosaic virus, good for an RNA virologist's basic needs. Molecular Plant Pathology. 1: 91-97. PMID 20572956 DOI: 10.1046/J.1364-3703.2000.00017.X  0.566
2000 Chen MH, Roossinck MJ, Kao CC. Efficient and specific initiation of subgenomic RNA synthesis by cucumber mosaic virus replicase in vitro requires an upstream RNA stem-loop. Journal of Virology. 74: 11201-9. PMID 11070017 DOI: 10.1128/Jvi.74.23.11201-11209.2000  0.493
2000 Kao CC, Yang X, Kline A, Wang QM, Barket D, Heinz BA. Template requirements for RNA synthesis by a recombinant hepatitis C virus RNA-dependent RNA polymerase. Journal of Virology. 74: 11121-8. PMID 11070008 DOI: 10.1128/Jvi.74.23.11121-11128.2000  0.546
2000 Sivakumaran K, Bao Y, Roossinck MJ, Kao CC. Recognition of the core RNA promoter for minus-strand RNA synthesis by the replicases of Brome mosaic virus and Cucumber mosaic virus Journal of Virology. 74: 10323-10331. PMID 11044076 DOI: 10.1128/Jvi.74.22.10323-10331.2000  0.538
2000 Kim M, Zhong W, Hong Z, Kao CC. Template Nucleotide Moieties Required for De Novo Initiation of RNA Synthesis by a Recombinant Viral RNA-Dependent RNA Polymerase Journal of Virology. 74: 10312-10322. PMID 11044075 DOI: 10.1128/Jvi.74.22.10312-10322.2000  0.539
2000 Vassiliou W, Epp JB, Wang BB, Del Vecchio AM, Widlanski T, Kao CC. Exploiting polymerase promiscuity: A simple colorimetric RNA polymerase assay. Virology. 274: 429-37. PMID 10964785 DOI: 10.1006/Viro.2000.0492  0.539
2000 Kim CH, Kao CC, Tinoco I. RNA motifs that determine specificity between a viral replicase and its promoter Nature Structural Biology. 7: 415-423. PMID 10802741 DOI: 10.1038/75202  0.529
2000 Sivakumaran K, Kao CC. Genomic plus-strand RNA synthesis by the brome mosaic virus (BMV) RNA replicase requires a sequence that is complementary to the binding site of the BMV helicase-like protein Molecular Plant Pathology. 1: 337-346. DOI: 10.1046/J.1364-3703.2000.00037.X  0.544
1999 Sivakumaran K, Kim CH, Tayon R, Kao CC. RNA sequence and secondary structural determinants in a minimal viral promoter that directs replicase recognition and initiation of genomic plus-strand RNA synthesis Journal of Molecular Biology. 294: 667-682. PMID 10610788 DOI: 10.1006/Jmbi.1999.3297  0.544
1999 Lai VC, Kao CC, Ferrari E, Park J, Uss AS, Wright-Minogue J, Hong Z, Lau JY. Mutational analysis of bovine viral diarrhea virus RNA-dependent RNA polymerase. Journal of Virology. 73: 10129-36. PMID 10559328 DOI: 10.1128/Jvi.73.12.10129-10136.1999  0.569
1999 Kao C, Zheng M, Rüdisser S. A simple and efficient method to reduce nontemplated nucleotide addition at the 3 terminus of RNAs transcribed by T7 RNA polymerase. Rna. 5: 1268-1272. PMID 10496227 DOI: 10.1017/S1355838299991033  0.463
1999 Siegel RW, Bellon L, Beigelman L, Kao CC. Use of DNA, RNA, and chimeric templates by a viral RNA-dependent RNA polymerase: Evolutionary implications for the transition from the RNA to the DNA world Journal of Virology. 73: 6424-6429. PMID 10400735 DOI: 10.1128/Jvi.73.8.6424-6429.1999  0.527
1999 Sivakumaran K, Kao CC. Initiation of genomic plus-strand RNA synthesis from DNA and RNA templates by a viral RNA-dependent RNA polymerase Journal of Virology. 73: 6415-6423. PMID 10400734 DOI: 10.1128/JVI.73.8.6415-6423.1999  0.444
1999 Kong F, Sivakumaran K, Kao C. The N-terminal half of the brome mosaic virus 1a protein Has RNA capping-associated activities: Specificity for GTP and S-adenosylmethionine Virology. 259: 200-210. PMID 10364504 DOI: 10.1006/viro.1999.9763  0.425
1999 Chapman MR, Kao CC. A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex Journal of Molecular Biology. 286: 709-720. PMID 10024445 DOI: 10.1006/Jmbi.1998.2503  0.532
1999 Kao CC, Del Vecchio AM, Zhong W. De novo initiation of RNA synthesis by a recombinant flaviridae RNA- dependent RNA polymerase Virology. 253: 1-7. PMID 9887312 DOI: 10.1006/Viro.1998.9517  0.541
1999 Stawicki SS, Kao CC. Spatial Perturbations within an RNA Promoter Specifically Recognized by a Viral RNA-Dependent RNA Polymerase (RdRp) Reveal That RdRp Can Adjust Its Promoter Binding Sites Journal of Virology. 73: 198-204. PMID 9847322 DOI: 10.1128/Jvi.73.1.198-204.1999  0.53
1998 Chapman MR, Rao AL, Kao CC. Sequences 5' of the conserved tRNA-like promoter modulate the initiation of minus-strand synthesis by the brome mosaic virus RNA-dependent RNA polymerase. Virology. 252: 458-67. PMID 9878626 DOI: 10.1006/Viro.1998.9473  0.52
1998 O'Reilly EK, Kao CC. Analysis of RNA-dependent RNA polymerase structure and function as guided by known polymerase structures and computer predictions of secondary structure Virology. 252: 287-303. PMID 9878607 DOI: 10.1006/Viro.1998.9463  0.48
1998 Adkins S, Kao CC. Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases Virology. 252: 1-8. PMID 9875310 DOI: 10.1006/Viro.1998.9449  0.529
1998 Figlerowicz M, Nagy PD, Tang N, Kao CC, Bujarski JJ. Mutations in the N terminus of the brome mosaic virus polymerase affect genetic RNA-RNA recombination Journal of Virology. 72: 9192-9200. PMID 9765466 DOI: 10.1128/Jvi.72.11.9192-9200.1998  0.429
1998 Siegel RW, Bellon L, Beigelman L, Kao CC. Moieties in an RNA promoter specifically recognized by a viral RNA- dependent RNA polymerase Proceedings of the National Academy of Sciences of the United States of America. 95: 11613-11618. PMID 9751714 DOI: 10.1073/Pnas.95.20.11613  0.552
1998 O'Reilly EK, Wang Z, French RC, Kao CC. Interactions between the Structural Domains of the RNA Replication Proteins of Plant-Infecting RNA Viruses Journal of Virology. 72: 7160-7169. PMID 9696810 DOI: 10.1128/Jvi.72.9.7160-7169.1998  0.497
1998 Adkins S, Stawicki SS, Faurote G, Siegel RW, Kao CC. Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase Rna. 4: 455-470. PMID 9630251  0.447
1997 Siegel RW, Adkins S, Kao CC. Sequence-specific recognition of a subgenomic RNA promoter by a vital RNA polymerase Proceedings of the National Academy of Sciences of the United States of America. 94: 11238-11243. PMID 9326593 DOI: 10.1073/Pnas.94.21.11238  0.541
1997 Sun JH, Kao CC. Characterization of RNA products associated with or aborted by a viral RNA-dependent RNA polymerase Virology. 236: 348-353. PMID 9325242 DOI: 10.1006/Viro.1997.8742  0.519
1997 O'Reilly EK, Paul JD, Kao CC. Analysis of the interaction of viral RNA replication proteins by using the yeast two-hybrid assay. Journal of Virology. 71: 7526-32. PMID 9311832 DOI: 10.1128/JVI.71.10.7526-7532.1997  0.341
1997 Sun JH, Kao CC. RNA synthesis by the brome mosaic virus RNA-dependent RNA polymerase: Transition from initiation to elongation Virology. 233: 63-73. PMID 9201217 DOI: 10.1006/Viro.1997.8583  0.536
1997 Adkins S, Siegel RW, Sun JH, Kao CC. Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase Rna. 3: 634-647. PMID 9174098  0.455
1997 Sun J, Adkins S, Faurote G, Kao CC. Initiation of (—)-Strand RNA Synthesis Catalyzed by the BMV RNA-Dependent RNA Polymerase: Synthesis of Oligonucleotides: Volume226,Number 1 (1996), pages 1–2 Virology. 228. DOI: 10.1006/Viro.1996.8404  0.515
1996 Sun J, Adkins S, Faurote G, Kao CC. Initiation of (−)-Strand RNA Synthesis Catalyzed by the BMV RNA-Dependent RNA Polymerase: Synthesis of Oligonucleotides Virology. 226: 1-12. PMID 8941317 DOI: 10.1006/Viro.1996.0622  0.529
1996 Kao CC, Sun JH. Initiation of minus-strand RNA synthesis by the brome mosaic virus RNA- dependent RNA polymerase: Use of oligoribonucleotide primers Journal of Virology. 70: 6826-6830. PMID 8794323 DOI: 10.1128/Jvi.70.10.6826-6830.1996  0.533
1995 Sun JH, Kao CC. Double-stranded RNA is nonspecifically bound by agarose Analytical Biochemistry. 230: 185-187. PMID 8585620 DOI: 10.1006/abio.1995.1458  0.414
1995 O'reilly EK, Tang N, Ahlquist P, Kao CC. Biochemical and Genetic Analyses of the Interaction between the Helicase-like and Polymerase-like Proteins of the Brome Mosaic Virus Virology. 214: 59-71. PMID 8525639 DOI: 10.1006/Viro.1995.9954  0.632
1994 Ahlquist P, Wu SX, Kaesberg P, Kao CC, Quadt R, DeJong W, Hershberger R. Protein-protein interactions and glycerophospholipids in bromovirus and nodavirus RNA replication. Archives of Virology. Supplementum. 9: 135-45. PMID 8032245 DOI: 10.1007/978-3-7091-9326-6_14  0.768
1993 Quadt R, Kao CC, Browning KS, Hershberger RP, Ahlquist P. Characterization of a host protein associated with brome mosaic virus RNA-dependent RNA polymerase Proceedings of the National Academy of Sciences of the United States of America. 90: 1498-1502. PMID 8434011 DOI: 10.1073/Pnas.90.4.1498  0.701
1992 Kao CC, Ahlquist P. Identification of the domains required for direct interaction of the helicase-like and polymerase-like RNA replication proteins of brome mosaic virus. Journal of Virology. 66: 7293-7302. PMID 1433519 DOI: 10.1128/Jvi.66.12.7293-7302.1992  0.627
1992 Kao CC, Quadt R, Hershberger RP, Ahlquist P. Brome mosaic virus RNA replication proteins 1a and 2a from a complex in vitro. Journal of Virology. 66: 6322-6329. PMID 1404594 DOI: 10.1128/Jvi.66.11.6322-6329.1992  0.637
1991 Lieberman PM, Schmidt MC, Kao CC, Berk AJ. Two distinct domains in the yeast transcription factor IID and evidence for a TATA box-induced conformational change. Molecular and Cellular Biology. 11: 63-74. PMID 1986253 DOI: 10.1128/mcb.11.1.63-74.1991  0.32
1991 Lee WS, Kao CC, Bryant GO, Liu X, Berk AJ. Adenovirus E1A activation domain binds the basic repeat in the TATA box transcription factor Cell. 67: 365-376. PMID 1833071 DOI: 10.1016/0092-8674(91)90188-5  0.304
1990 Kao CC, Lieberman PM, Schmidt MC, Zhou Q, Pei R, Berk AJ. Cloning of a transcriptionally active human TATA binding factor. Science (New York, N.Y.). 248: 1646-50. PMID 2194289 DOI: 10.1126/Science.2194289  0.341
1989 Schmidt MC, Kao CC, Pei R, Berk AJ. Yeast TATA-box transcription factor gene. Proceedings of the National Academy of Sciences of the United States of America. 86: 7785-9. PMID 2682626 DOI: 10.1073/Pnas.86.20.7785  0.33
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