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Michael E Wall, Ph.D. - Publications

Affiliations: 
1989-1996 Physics Princeton University, Princeton, NJ 
Area:
X-ray crystallography, diffuse scattering, biophysics, protein dynamics, molecular dynamics simulations
Website:
https://public.lanl.gov/mewall/
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Wych DC, Fraser JS, Mobley DL, Wall ME. Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein. Structural Dynamics (Melville, N.Y.). 6: 064704. PMID 31867408 DOI: 10.1063/1.5132692  0.391
2019 Dasgupta M, Budday D, de Oliveira SHP, Madzelan P, Marchany-Rivera D, Seravalli J, Hayes B, Sierra RG, Boutet S, Hunter MS, Alonso-Mori R, Batyuk A, Wierman J, Lyubimov A, Brewster AS, ... ... Wall ME, et al. Mix-and-inject XFEL crystallography reveals gated conformational dynamics during enzyme catalysis. Proceedings of the National Academy of Sciences of the United States of America. PMID 31801874 DOI: 10.1073/pnas.1901864116  0.706
2019 Wall ME, CalabrĂ³ G, Bayly CI, Mobley DL, Warren GL. Biomolecular Solvation Structure Revealed by Molecular Dynamics Simulations. Journal of the American Chemical Society. PMID 30834751 DOI: 10.1021/Jacs.8B13613  0.346
2019 Wall ME. Save the data! Diffuse scattering to shed light on structural dynamics Acta Crystallographica Section a Foundations and Advances. 75: a49-a49. DOI: 10.1107/S0108767319099501  0.329
2019 Wilson MA, DasGupta M, Su Z, Yoon CH, Wall ME, van den Bedem H. Cysteine modification-gated protein dynamics explored using X-ray diffuse scattering Acta Crystallographica Section a Foundations and Advances. 75: a191-a191. DOI: 10.1107/S0108767319098106  0.436
2019 Wych D, Wall ME, Mobley D. Molecular dynamics simulations of diffuse scattering Acta Crystallographica Section a Foundations and Advances. 75: a247-a247. DOI: 10.1107/S0108767319097575  0.327
2018 Wall ME. Internal protein motions in molecular-dynamics simulations of Bragg and diffuse X-ray scattering. Iucrj. 5: 172-181. PMID 29765607 DOI: 10.1107/S2052252518000519  0.454
2018 Wall ME. Interactions that know no boundaries. Iucrj. 5: 120-121. PMID 29765599 DOI: 10.1107/S2052252518002713  0.309
2018 Wall ME, Wolff AM, Fraser JS. Bringing diffuse X-ray scattering into focus. Current Opinion in Structural Biology. 50: 109-116. PMID 29455056 DOI: 10.1016/J.Sbi.2018.01.009  0.423
2016 Wall ME. Quantum crystallographic charge density of urea. Iucrj. 3: 237-46. PMID 27437111 DOI: 10.1107/S2052252516006242  0.304
2016 Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME. Measuring and modeling diffuse scattering in protein X-ray crystallography. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035972 DOI: 10.1073/Pnas.1524048113  0.438
2016 Van Benschoten AH, Liu L, Gonzalez A, Brewster AS, Sauter NK, Fraser JS, Wall ME. Measuring and modeling diffuse scattering in protein X-ray crystallography Proceedings of the National Academy of Sciences of the United States of America. 113: 4069-4074. DOI: 10.1073/pnas.1524048113/-/DCSupplemental  0.335
2015 Van Benschoten AH, Afonine PV, Terwilliger TC, Wall ME, Jackson CJ, Sauter NK, Adams PD, Urzhumtsev A, Fraser JS. Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles. Acta Crystallographica. Section D, Biological Crystallography. 71: 1657-67. PMID 26249347 DOI: 10.1107/S1399004715007415  0.443
2014 Wall ME, Van Benschoten AH, Sauter NK, Adams PD, Fraser JS, Terwilliger TC. Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering. Proceedings of the National Academy of Sciences of the United States of America. 111: 17887-92. PMID 25453071 DOI: 10.1073/Pnas.1416744111  0.436
2014 Wall ME, Adams PD, Fraser JS, Sauter NK. Diffuse X-ray scattering to model protein motions. Structure (London, England : 1993). 22: 182-4. PMID 24507780 DOI: 10.1016/J.Str.2014.01.002  0.417
2014 Wall ME, Terwilliger TC, Fraser JS, Adams PD, Sauter NK, VanBenschoten A. Diffuse X-Ray Scattering for Ensemble Modeling of Crystalline Proteins Biophysical Journal. 106: 384a. DOI: 10.1016/J.Bpj.2013.11.2171  0.461
2012 Verspoor KM, Cohn JD, Ravikumar KE, Wall ME. Text mining improves prediction of protein functional sites. Plos One. 7: e32171. PMID 22393388 DOI: 10.1371/Journal.Pone.0032171  0.326
2012 Ming D, Wall ME. Predicting binding sites by analyzing allosteric effects. Methods in Molecular Biology (Clifton, N.J.). 796: 423-36. PMID 22052504 DOI: 10.1007/978-1-61779-334-9_23  0.337
2009 Wall ME. Methods and software for diffuse X-ray scattering from protein crystals. Methods in Molecular Biology (Clifton, N.J.). 544: 269-79. PMID 19488705 DOI: 10.1007/978-1-59745-483-4_17  0.439
2009 Dreisigmeyer DW, Wall ME. Prediction of Allosteric Linkages in Proteins Biophysical Journal. 96: 573a. DOI: 10.1016/J.Bpj.2008.12.3749  0.347
2009 Cohn JD, Ming D, Wall ME. Prediction of Functional Sites in 50,000 Protein Domains Using Dynamics Perturbation Analysis Biophysical Journal. 96: 650a. DOI: 10.1016/J.Bpj.2008.12.3433  0.369
2008 Ming D, Anghel M, Wall ME. Hidden structure in protein energy landscapes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 021902. PMID 18352046 DOI: 10.1103/Physreve.77.021902  0.309
2008 Ming D, Cohn JD, Wall ME. Fast dynamics perturbation analysis for prediction of protein functional sites. Bmc Structural Biology. 8: 5. PMID 18234095 DOI: 10.1186/1472-6807-8-5  0.347
2007 Ming D, Wall ME, Sanbonmatsu KY. Domain motions of Argonaute, the catalytic engine of RNA interference. Bmc Bioinformatics. 8: 470. PMID 18053142 DOI: 10.1186/1471-2105-8-470  0.339
2006 Ming D, Wall ME. Interactions in native binding sites cause a large change in protein dynamics. Journal of Molecular Biology. 358: 213-23. PMID 16513135 DOI: 10.1016/J.Jmb.2006.01.097  0.391
2006 Ming D, Wall ME. Erratum: Allostery in a Coarse-Grained Model of Protein Dynamics [Phys. Rev. Lett.95, 198103 (2005)] Physical Review Letters. 96. DOI: 10.1103/Physrevlett.96.159902  0.307
2005 Ming D, Wall ME. Allostery in a coarse-grained model of protein dynamics. Physical Review Letters. 95: 198103. PMID 16384030 DOI: 10.1103/Physrevlett.95.198103  0.3
2005 Ming D, Wall ME. Quantifying allosteric effects in proteins. Proteins. 59: 697-707. PMID 15822100 DOI: 10.1002/Prot.20440  0.338
2003 Wall ME, Francis SH, Corbin JD, Grimes K, Richie-Jannetta R, Kotera J, Macdonald BA, Gibson RR, Trewhella J. Mechanisms associated with cGMP binding and activation of cGMP-dependent protein kinase. Proceedings of the National Academy of Sciences of the United States of America. 100: 2380-5. PMID 12591946 DOI: 10.1073/Pnas.0534892100  0.549
2000 Wall ME, Gallagher SC, Trewhella J. Large-scale shape changes in proteins and macromolecular complexes. Annual Review of Physical Chemistry. 51: 355-80. PMID 11031286 DOI: 10.1146/Annurev.Physchem.51.1.355  0.557
2000 Tung CS, Wall ME, Gallagher SC, Trewhella J. A model of troponin-I in complex with troponin-C using hybrid experimental data: the inhibitory region is a beta-hairpin. Protein Science : a Publication of the Protein Society. 9: 1312-26. PMID 10933496 DOI: 10.1110/Ps.9.7.1312  0.56
1999 Wall ME, Subramaniam S, Phillips GN. Protein structure determination using a database of interatomic distance probabilities. Protein Science : a Publication of the Protein Society. 8: 2720-7. PMID 10631988 DOI: 10.1110/Ps.8.12.2720  0.505
1997 Wall ME, Clarage JB, Phillips GN. Motions of calmodulin characterized using both Bragg and diffuse X-ray scattering Structure. 5: 1599-1612. PMID 9438860 DOI: 10.1016/S0969-2126(97)00308-0  0.723
1997 Wall ME, Ealick SE, Gruner SM. Three-dimensional diffuse x-ray scattering from crystals of Staphylococcal nuclease. Proceedings of the National Academy of Sciences of the United States of America. 94: 6180-4. PMID 9177191 DOI: 10.1073/Pnas.94.12.6180  0.557
1996 Wall ME, Gruner SM, Ealick SE. Three-dimensional diffuse X-ray scattering from staphylococcal nuclease Acta Crystallographica Section a Foundations of Crystallography. 52: C16-C16. DOI: 10.1107/S0108767396098352  0.559
1995 Walter RL, Thiel DJ, Barna SL, Tate MW, Wall ME, Eikenberry EF, Gruner SM, Ealick SE. High-resolution macromolecular structure determination using CCD detectors and synchrotron radiation. Structure (London, England : 1993). 3: 835-44. PMID 7582900 DOI: 10.1016/S0969-2126(01)00218-0  0.693
1995 Tate MW, Eikenberry EF, Barna SL, Wall ME, Lowrance JL, Gruner SM. A Large-Format High-Resolution Area X-ray Detector Based on a Fiber-Optically Bonded Charge-Coupled Device (CCD) Journal of Applied Crystallography. 28: 196-205. DOI: 10.1107/S0021889894007867  0.7
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