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Longjiang Fan - Publications

Affiliations: 
Zhejiang University, Hangzhou Shi, Zhejiang Sheng, China 
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61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kehinde BO, Xie L, Song BK, Zheng X, Fan L. African Cultivated, Wild and Weedy Rice ( spp.): Anticipating Further Genomic Studies. Biology. 13. PMID 39336124 DOI: 10.3390/biology13090697  0.489
2024 Zhu M, Yong K, Xu K, Cong J, Zhou X, Liu K, Wang X, Fan L, Olsen KM, Huang X, Zhou X, Qiu J. Landrace introgression contributed to the recent feralization of weedy rice in East China. Plant Communications. 101066. PMID 39169627 DOI: 10.1016/j.xplc.2024.101066  0.642
2024 Montgomery J, Morran S, MacGregor DR, McElroy JS, Neve P, Neto C, Vila-Aiub MM, Sandoval MV, Menéndez AI, Kreiner JM, Fan L, Caicedo AL, Maughan PJ, Martins BAB, Mika J, et al. Current status of community resources and priorities for weed genomics research. Genome Biology. 25: 139. PMID 38802856 DOI: 10.1186/s13059-024-03274-y  0.365
2024 Xie L, Gong X, Yang K, Huang Y, Zhang S, Shen L, Sun Y, Wu D, Ye C, Zhu QH, Fan L. Technology-enabled great leap in deciphering plant genomes. Nature Plants. PMID 38509222 DOI: 10.1038/s41477-024-01655-6  0.417
2024 Huang Y, Guo L, Xie L, Shang N, Wu D, Ye C, Rudell EC, Okada K, Zhu QH, Song BK, Cai D, Junior AM, Bai L, Fan L. A reference genome of Commelinales provides insights into the commelinids evolution and global spread of water hyacinth (Pontederia crassipes). Gigascience. 13. PMID 38486346 DOI: 10.1093/gigascience/giae006  0.412
2023 Xie L, Wu D, Fang Y, Ye C, Zhu QH, Wei X, Fan L. Population genomic analysis unravels the evolutionary roadmap of pericarp color in rice. Plant Communications. 100778. PMID 38062703 DOI: 10.1016/j.xplc.2023.100778  0.441
2023 Hu Y, Sun Y, Zhu QH, Fan L, Li J. Poaceae Chloroplast Genome Sequencing: Great Leap Forward in Recent Ten Years. Current Genomics. 23: 369-384. PMID 37920556 DOI: 10.2174/1389202924666221201140603  0.401
2023 Wu D, Xie L, Sun Y, Huang Y, Jia L, Dong C, Shen E, Ye CY, Qian Q, Fan L. A syntelog-based pan-genome provides insights into rice domestication and de-domestication. Genome Biology. 24: 179. PMID 37537691 DOI: 10.1186/s13059-023-03017-5  0.424
2023 Huang Y, Wu D, Huang Z, Li X, Merotto A, Bai L, Fan L. Weed genomics: yielding insights into the genetics of weedy traits for crop improvement. Abiotech. 4: 20-30. PMID 37220539 DOI: 10.1007/s42994-022-00090-5  0.447
2023 Sultana MH, Alamin M, Qiu J, Fan L, Ye C. Transcriptomic profiling reveals candidate allelopathic genes in rice responsible for interactions with barnyardgrass. Frontiers in Plant Science. 14: 1104951. PMID 36875579 DOI: 10.3389/fpls.2023.1104951  0.524
2022 Hu Y, Dong C, Ye C, Fan L, Tang W. The complete chloroplast genome of type weedy rice ( f. ). Mitochondrial Dna. Part B, Resources. 7: 1418-1420. PMID 35937906 DOI: 10.1080/23802359.2022.2106160  0.379
2022 Wu D, Hu Y, Akashi S, Nojiri H, Guo L, Ye CY, Zhu QH, Okada K, Fan L. Lateral transfers lead to the birth of momilactone biosynthetic gene clusters in grass. The Plant Journal : For Cell and Molecular Biology. PMID 35781905 DOI: 10.1111/tpj.15893  0.367
2022 Wu D, Shen E, Jiang B, Feng Y, Tang W, Lao S, Jia L, Lin HY, Xie L, Weng X, Dong C, Qian Q, Lin F, Xu H, Lu H, ... ... Fan L, et al. Genomic insights into the evolution of Echinochloa species as weed and orphan crop. Nature Communications. 13: 689. PMID 35115514 DOI: 10.1038/s41467-022-28359-9  0.701
2022 Tong Z, Du T, Hu Y, Chen H, Shen E, Fan L, Xiao B. The complete chloroplast genome of . Mitochondrial Dna. Part B, Resources. 7: 239-240. PMID 35087940 DOI: 10.1080/23802359.2021.2024772  0.413
2022 Wu D, Qiu J, Sun J, Song BK, Olsen KM, Fan L. Weedy rice, a hidden gold mine in the paddy field. Molecular Plant. PMID 35032686 DOI: 10.1016/j.molp.2022.01.008  0.542
2022 Ding Y, Hu Y, Fan L, Chu Q. The whole chloroplast genome of subsp a wild and perennial kinship to cultivated rye. Mitochondrial Dna. Part B, Resources. 7: 112-114. PMID 34993330 DOI: 10.1080/23802359.2021.2011447  0.442
2021 Sun Y, Shen E, Hu Y, Wu D, Feng Y, Lao S, Dong C, Du T, Hua W, Ye CY, Zhu J, Zhu QH, Cai D, Skuza L, Qiu J, ... Fan L, et al. Population genomic analysis reveals domestication of cultivated rye from weedy rye. Molecular Plant. PMID 34971791 DOI: 10.1016/j.molp.2021.12.015  0.637
2021 Sun Y, Shang L, Zhu QH, Fan L, Guo L. Twenty years of plant genome sequencing: achievements and challenges. Trends in Plant Science. PMID 34782248 DOI: 10.1016/j.tplants.2021.10.006  0.425
2021 Chu Q, Ding Y, Xu X, Ye CY, Zhu QH, Guo L, Fan L. Recent origination of circular RNAs in plants. The New Phytologist. PMID 34643280 DOI: 10.1111/nph.17798  0.34
2021 Jiang B, Lao S, Wu D, Fan L, Ye CY. The complete chloroplast genome of . Mitochondrial Dna. Part B, Resources. 6: 3105-3106. PMID 34621989 DOI: 10.1080/23802359.2021.1982654  0.426
2021 Dong C, Hu Y, Ye C, Fan L, Guo L. The complete chloroplast genome of weedy rice f. . Mitochondrial Dna. Part B, Resources. 6: 3016-3017. PMID 34568568 DOI: 10.1080/23802359.2021.1977197  0.327
2021 Pan L, Yu Q, Wang J, Han H, Mao L, Nyporko A, Maguza A, Fan L, Bai L, Powles S. An ABCC-type transporter endowing glyphosate resistance in plants. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33846264 DOI: 10.1073/pnas.2100136118  0.301
2021 Wu D, Lao S, Fan L. De-Domestication: An Extension of Crop Evolution. Trends in Plant Science. PMID 33648850 DOI: 10.1016/j.tplants.2021.02.003  0.437
2020 Ye CY, Fan L. Orphan crops and their wild relatives in the genomic era. Molecular Plant. PMID 33346062 DOI: 10.1016/j.molp.2020.12.013  0.459
2020 Ye CY, Wu D, Mao L, Jia L, Qiu J, Lao S, Chen M, Jiang B, Tang W, Peng Q, Pan L, Wang L, Feng X, Guo L, Zhang C, ... ... Fan L, et al. The genomes of the allohexaploid Echinochloa crus-galli and its progenitors provide insights into polyploidization-driven adaptation. Molecular Plant. PMID 32622997 DOI: 10.1016/J.Molp.2020.07.001  0.686
2020 Mao L, Kawaide H, Higuchi T, Chen M, Miyamoto K, Hirata Y, Kimura H, Miyazaki S, Teruya M, Fujiwara K, Tomita K, Yamane H, Hayashi KI, Nojiri H, Jia L, ... ... Fan L, et al. Genomic evidence for convergent evolution of gene clusters for momilactone biosynthesis in land plants. Proceedings of the National Academy of Sciences of the United States of America. PMID 32409606 DOI: 10.1073/Pnas.1914373117  0.624
2020 Qiu J, Jia L, Wu D, Weng X, Chen L, Sun J, Chen M, Mao L, Jiang B, Ye C, Turra GM, Guo L, Ye G, Zhu QH, Imaizumi T, ... ... Fan L, et al. Diverse genetic mechanisms underlie worldwide convergent rice feralization. Genome Biology. 21: 70. PMID 32213201 DOI: 10.1186/S13059-020-01980-X  0.658
2020 Zheng Y, Li S, Huang J, Fan L, Shu Q. Identification and Characterization of γ-Ray-Induced Mutations in Rice Cytoplasmic Genomes by Whole-Genome Sequencing. Cytogenetic and Genome Research. PMID 32146470 DOI: 10.1159/000506033  0.333
2019 Mao L, Chen M, Chu Q, Jia L, Sultana MH, Wu D, Kong X, Qiu J, Ye CY, Zhu QH, Chen X, Fan L. RiceRelativesGD: a genomic database of rice relatives for rice research. Database : the Journal of Biological Databases and Curation. 2019. PMID 31560050 DOI: 10.1093/database/baz110  0.601
2019 Pan L, Yu Q, Han H, Mao L, Nyporko A, Fan L, Bai L, Powles SB. Aldo-keto reductase metabolizes glyphosate and confers glyphosate resistance in Echinochloa colona. Plant Physiology. PMID 31551360 DOI: 10.1104/pp.19.00979  0.306
2019 Ye CY, Tang W, Wu D, Jia L, Qiu J, Chen M, Mao L, Lin F, Xu H, Yu X, Lu Y, Wang Y, Olsen KM, Timko MP, Fan L. Genomic evidence of human selection on Vavilovian mimicry. Nature Ecology & Evolution. PMID 31527731 DOI: 10.1038/S41559-019-0976-1  0.697
2019 Chen X, Liu F, Liu L, Qiu J, Fang D, Wang W, Zhang X, Ye C, Timko MP, Zhu QH, Fan L, Xiao B. Characterization and evolution of gene clusters for terpenoid phytoalexin biosynthesis in tobacco. Planta. PMID 31414203 DOI: 10.1007/S00425-019-03255-7  0.526
2019 Sultana MH, Liu F, Alamin M, Mao L, Jia L, Chen H, Wu D, Wang Y, Fu F, Wu S, Wang W, Ye C, Zhu QH, Qiu J, Fan L. Gene Modules Co-regulated with Biosynthetic Gene Clusters for Allelopathy between Rice and Barnyardgrass. International Journal of Molecular Sciences. 20. PMID 31394718 DOI: 10.3390/ijms20163846  0.49
2019 Peng Y, Zhang Y, Gui Y, An D, Liu J, Xu X, Li Q, Wang J, Wang W, Shi C, Fan L, Lu B, Deng Y, Teng S, He Z. Elimination of a retrotransposon for quenching genome instability in modern rice. Molecular Plant. PMID 31228579 DOI: 10.1016/J.Molp.2019.06.004  0.464
2019 Zou J, Mao L, Qiu J, Wang M, Jia L, Wu D, He Z, Chen M, Shen Y, Shen E, Huang Y, Li R, Hu D, Shi L, Wang K, ... ... Fan L, et al. Genome-wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed. Plant Biotechnology Journal. PMID 30947395 DOI: 10.1111/pbi.13115  0.59
2018 Xia H, Luo Z, Xiong J, Ma X, Lou Q, Wei H, Qiu J, Yang H, Liu G, Fan L, Chen L, Luo L. Bi-directional selection in upland rice leads to its adaptive differentiation from lowland rice on drought resistance and productivity. Molecular Plant. PMID 30584948 DOI: 10.1016/j.molp.2018.12.011  0.497
2018 Guo L, Qiu J, Li LF, Lu B, Olsen K, Fan L. Genomic Clues for Crop-Weed Interactions and Evolution. Trends in Plant Science. PMID 30293809 DOI: 10.1016/J.Tplants.2018.09.009  0.658
2018 Jia HM, Jia HJ, Cai QL, Wang Y, Zhao HB, Yang WF, Wang GY, Li YH, Zhan DL, Shen YT, Niu QF, Chang L, Qiu J, Zhao L, Xie HB, ... ... Fan LJ, et al. The red bayberry genome and genetic basis of sex determination. Plant Biotechnology Journal. PMID 29992702 DOI: 10.1111/pbi.12985  0.513
2018 Ravet K, Patterson EL, Krähmer H, Hamouzová K, Fan L, Jasieniuk M, Lawton-Rauh A, Malone JM, Scott McElroy J, Merotto A, Westra P, Preston C, Vila-Aiub MM, Busi R, Tranel PJ, et al. The Power and Potential of Genomics in Weed Biology and Management. Pest Management Science. PMID 29687580 DOI: 10.1002/Ps.5048  0.39
2017 Bukowski R, Guo X, Lu Y, Zou C, He B, Rong Z, Wang B, Xu D, Yang B, Xie C, Fan L, Gao S, Xu X, Zhang G, Li Y, et al. Construction of the third generation Zea mays haplotype map. Gigascience. PMID 29300887 DOI: 10.1093/Gigascience/Gix134  0.386
2017 Guo L, Qiu J, Ye C, Jin G, Mao L, Zhang H, Yang X, Peng Q, Wang Y, Jia L, Lin Z, Li G, Fu F, Liu C, Chen L, ... ... Fan L, et al. Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed. Nature Communications. 8: 1031. PMID 29044108 DOI: 10.1038/S41467-017-01067-5  0.592
2017 Ye Z, Pan Y, Zhang Y, Cui H, Jin G, McHardy AC, Fan L, Yu X. Comparative whole-genome analysis reveals artificial selection effects on Ustilago esculenta genome. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 28992048 DOI: 10.1093/dnares/dsx031  0.415
2017 Qiu J, Zhou Y, Mao L, Ye C, Wang W, Zhang J, Yu Y, Fu F, Wang Y, Qian F, Qi T, Wu S, Sultana MH, Cao YN, Wang Y, ... ... Fan L, et al. Genomic variation associated with local adaptation of weedy rice during de-domestication. Nature Communications. 8: 15323. PMID 28537247 DOI: 10.1038/Ncomms15323  0.61
2017 Sun YH, Hung CY, Qiu J, Chen J, Kittur FS, Oldham CE, Henny RJ, Burkey KO, Fan L, Xie J. Accumulation of high OPDA level correlates with reduced ROS and elevated GSH benefiting white cell survival in variegated leaves. Scientific Reports. 7: 44158. PMID 28276518 DOI: 10.1038/Srep44158  0.45
2016 Li WX, Wu SL, Liu YH, Jin GL, Zhao HJ, Fan LJ, Shu QY. Genome-wide profiling of genetic variation in Agrobacterium-transformed rice plants. Journal of Zhejiang University. Science. B. 17: 992-996. PMID 27921404 DOI: 10.1631/jzus.B1600301  0.354
2016 Hung CY, Qiu J, Sun YH, Chen J, Kittur FS, Henny RJ, Jin G, Fan L, Xie J. Gibberellin deficiency is responsible for shy-flowering nature of Epipremnum aureum. Scientific Reports. 6: 28598. PMID 27345283 DOI: 10.1038/Srep28598  0.462
2015 Shen E, Zou J, Hubertus Behrens F, Chen L, Ye C, Dai S, Li R, Ni M, Jiang X, Qiu J, Liu Y, Wang W, Zhu QH, Chalhoub B, Bancroft I, ... ... Fan L, et al. Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus. Journal of Experimental Botany. PMID 26357884 DOI: 10.1093/jxb/erv420  0.478
2015 Li F, Wang W, Zhao N, Xiao B, Cao P, Wu X, Ye C, Shen E, Qiu J, Zhu QH, Xie J, Zhou X, Fan L. Regulation of Nicotine Biosynthesis by an Endogenous Target Mimicry of miRNA in Tobacco. Plant Physiology. PMID 26246450 DOI: 10.1104/pp.15.00649  0.449
2015 Ye CY, Chen L, Liu C, Zhu QH, Fan L. Widespread noncoding circular RNAs in plants. The New Phytologist. 208: 88-95. PMID 26204923 DOI: 10.1111/nph.13585  0.311
2015 Guo L, Qiu J, Han Z, Ye Z, Chen C, Liu C, Xin X, Ye CY, Wang YY, Xie H, Wang Y, Bao J, Tang S, Xu J, Gui Y, ... ... Fan L, et al. A host plant genome (Zizania latifolia) after a century-long endophyte infection. The Plant Journal : For Cell and Molecular Biology. PMID 26072920 DOI: 10.1111/Tpj.12912  0.544
2014 Ye CY, Xu H, Shen E, Liu Y, Wang Y, Shen Y, Qiu J, Zhu QH, Fan L. Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean. Frontiers in Plant Science. 5: 743. PMID 25566308 DOI: 10.3389/fpls.2014.00743  0.451
2014 Ye CY, Lin Z, Li G, Wang YY, Qiu J, Fu F, Zhang H, Chen L, Ye S, Song W, Jin G, Zhu J, Lu Y, Guo L, Fan L. Echinochloa chloroplast genomes: insights into the evolution and taxonomic identification of two weedy species. Plos One. 9: e113657. PMID 25427255 DOI: 10.1371/journal.pone.0113657  0.59
2014 Qiu J, Wang Y, Wu S, Wang YY, Ye CY, Bai X, Li Z, Yan C, Wang W, Wang Z, Shu Q, Xie J, Lee SH, Fan L. Genome re-sequencing of semi-wild soybean reveals a complex Soja population structure and deep introgression. Plos One. 9: e108479. PMID 25265539 DOI: 10.1371/journal.pone.0108479  0.479
2014 Qiu J, Zhu J, Fu F, Ye CY, Wang W, Mao L, Lin Z, Chen L, Zhang H, Guo L, Qiang S, Lu Y, Fan L. Genome re-sequencing suggested a weedy rice origin from domesticated indica-japonica hybridization: a case study from southern China. Planta. 240: 1353-63. PMID 25187076 DOI: 10.1007/s00425-014-2159-2  0.602
2013 Hung CY, Fan L, Kittur FS, Sun K, Qiu J, Tang S, Holliday BM, Xiao B, Burkey KO, Bush LP, Conkling MA, Roje S, Xie J. Alteration of the alkaloid profile in genetically modified tobacco reveals a role of methylenetetrahydrofolate reductase in nicotine N-demethylation. Plant Physiology. 161: 1049-60. PMID 23221678 DOI: 10.1104/Pp.112.209247  0.404
2011 Fan L, Bo S, Chen H, Ye W, Kleinschmidt K, Baumann HI, Imhoff JF, Kleine M, Cai D. Genome sequence of Bacillus subtilis subsp. spizizenii gtP20b, isolated from the Indian ocean. Journal of Bacteriology. 193: 1276-7. PMID 21183663 DOI: 10.1128/JB.01351-10  0.322
2010 Gui YJ, Zhou Y, Wang Y, Wang S, Wang SY, Hu Y, Bo SP, Chen H, Zhou CP, Ma NX, Zhang TZ, Fan LJ. Insights into the bamboo genome: Syntenic relationships to rice and sorghum Journal of Integrative Plant Biology. 52: 1008-1015. PMID 20977658 DOI: 10.1111/j.1744-7909.2010.00965.x  0.383
2008 Gui Y, Wang S, Quan L, Zhou C, Long S, Zheng H, Jin L, Zhang X, Ma N, Fan L. Genome size and sequence composition of moso bamboo: a comparative study. Science in China. Series C, Life Sciences. 50: 700-5. PMID 17879070 DOI: 10.1007/s11427-007-0081-6  0.382
2007 Wang S, Zhu QH, Guo X, Gui Y, Bao J, Helliwell C, Fan L. Molecular evolution and selection of a gene encoding two tandem microRNAs in rice. Febs Letters. 581: 4789-93. PMID 17884044 DOI: 10.1016/j.febslet.2007.09.002  0.329
2005 Zhang Y, Xu GH, Guo XY, Fan LJ. Two ancient rounds of polyploidy in rice genome. Journal of Zhejiang University. Science. B. 6: 87-90. PMID 15633242 DOI: 10.1631/JZUS.2005.B0087  0.424
2004 Tian Y, Fan L, Thurau T, Jung C, Cai D. The absence of TIR-type resistance gene analogues in the sugar beet (Beta vulgaris L.) genome. Journal of Molecular Evolution. 58: 40-53. PMID 14743313 DOI: 10.1007/s00239-003-2524-4  0.323
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