| Year |
Citation |
Score |
| 2024 |
Stolle DS, Osterhoff L, Treimer P, Lambertz J, Karstens M, Keller JM, Gerlach I, Bischoff A, Dünschede B, Rödiger A, Herrmann C, Baginsky S, Hofmann E, Zoschke R, Armbruster U, et al. STIC2 selectively binds ribosome-nascent chain complexes in the cotranslational sorting of Arabidopsis thylakoid proteins. The Embo Journal. PMID 39192033 DOI: 10.1038/s44318-024-00211-4 |
0.319 |
|
| 2021 |
Bailey M, Ivanauskaite A, Grimmer J, Akintewe O, Payne AC, Osborne R, Labandera AM, Etherington RD, Rantala M, Baginsky S, Mulo P, Gibbs DJ. The Arabidopsis NOT4A E3 ligase promotes PGR3 expression and regulates chloroplast translation. Nature Communications. 12: 251. PMID 33431870 DOI: 10.1038/s41467-020-20506-4 |
0.316 |
|
| 2020 |
Rödiger A, Galonska J, Bergner E, Agne B, Helm S, Alseekh S, Fernie AR, Thieme D, Hoehenwarter W, Hause G, Pfannschmidt T, Baginsky S. Working day and night: plastid casein kinase 2 catalyses phosphorylation of proteins with diverse functions in light- and dark-adapted plastids. The Plant Journal : For Cell and Molecular Biology. PMID 32745315 DOI: 10.1111/tpj.14944 |
0.307 |
|
| 2020 |
Grimmer J, Helm S, Dobritzsch D, Hause G, Shema G, Zahedi RP, Baginsky S. Mild proteasomal stress improves photosynthetic performance in Arabidopsis chloroplasts. Nature Communications. 11: 1662. PMID 32245955 DOI: 10.1038/s41467-020-15539-8 |
0.383 |
|
| 2018 |
Helm S, Baginsky S. MSE for Label-Free Absolute Protein Quantification in Complex Proteomes. Methods in Molecular Biology (Clifton, N.J.). 1696: 235-247. PMID 29086408 DOI: 10.1007/978-1-4939-7411-5_16 |
0.355 |
|
| 2017 |
Zufferey M, Montandon C, Douet V, Demarsy E, Agne B, Baginsky S, Kessler F. The Novel Chloroplast Outer Membrane Kinase KOC1 Is a Required Component of the Plastid Protein Import Machinery. The Journal of Biological Chemistry. PMID 28283569 DOI: 10.1074/jbc.M117.776468 |
0.359 |
|
| 2016 |
Köhler D, Helm S, Agne B, Baginsky S. Importance of Translocon Subunit Tic56 for rRNA Processing and Chloroplast Ribosome Assembly. Plant Physiology. 172: 2429-2444. PMID 27733515 DOI: 10.1104/pp.16.01393 |
0.333 |
|
| 2016 |
Richter AS, Gartmann H, Fechler M, Rödiger A, Baginsky S, Grimm B. Identification of four plastid-localized protein kinases. Febs Letters. 590: 1749-56. PMID 27214872 DOI: 10.1002/1873-3468.12223 |
0.358 |
|
| 2016 |
Baginsky S. Protein phosphorylation in chloroplasts - a survey of phosphorylation targets. Journal of Experimental Botany. 67: 3873-82. PMID 26969742 DOI: 10.1093/jxb/erw098 |
0.391 |
|
| 2015 |
Köhler D, Dobritzsch D, Hoehenwarter W, Helm S, Steiner JM, Baginsky S. Identification of protein N-termini in Cyanophora paradoxa cyanelles: transit peptide composition and sequence determinants for precursor maturation. Frontiers in Plant Science. 6: 559. PMID 26257763 DOI: 10.3389/fpls.2015.00559 |
0.353 |
|
| 2015 |
Schönberg A, Baginsky S. The Peptide Microarray ChloroPhos1.0: A Screening Tool for the Identification of Arabidopsis thaliana Chloroplast Protein Kinase Substrates. Methods in Molecular Biology (Clifton, N.J.). 1306: 147-57. PMID 25930700 DOI: 10.1007/978-1-4939-2648-0_11 |
0.311 |
|
| 2015 |
Lu Q, Ding S, Reiland S, Rödiger A, Roschitzki B, Xue P, Gruissem W, Lu C, Baginsky S. Identification and characterization of chloroplast casein kinase II from Oryza sativa (rice). Journal of Experimental Botany. 66: 175-87. PMID 25316064 DOI: 10.1093/Jxb/Eru405 |
0.562 |
|
| 2014 |
Rödiger A, Agne B, Baerenfaller K, Baginsky S. Arabidopsis proteomics: a simple and standardizable workflow for quantitative proteome characterization. Methods in Molecular Biology (Clifton, N.J.). 1072: 275-88. PMID 24136529 DOI: 10.1007/978-1-62703-631-3_20 |
0.778 |
|
| 2012 |
Motohashi R, Rödiger A, Agne B, Baerenfaller K, Baginsky S. Common and specific protein accumulation patterns in different albino/pale-green mutants reveals regulon organization at the proteome level. Plant Physiology. 160: 2189-201. PMID 23027667 DOI: 10.1104/pp.112.204032 |
0.743 |
|
| 2012 |
Baerenfaller K, Massonnet C, Walsh S, Baginsky S, Bühlmann P, Hennig L, Hirsch-Hoffmann M, Howell KA, Kahlau S, Radziejwoski A, Russenberger D, Rutishauser D, Small I, Stekhoven D, Sulpice R, et al. Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Molecular Systems Biology. 8: 606. PMID 22929616 DOI: 10.1038/Msb.2012.39 |
0.745 |
|
| 2011 |
Bischof S, Baerenfaller K, Wildhaber T, Troesch R, Vidi PA, Roschitzki B, Hirsch-Hoffmann M, Hennig L, Kessler F, Gruissem W, Baginsky S. Plastid proteome assembly without Toc159: photosynthetic protein import and accumulation of N-acetylated plastid precursor proteins. The Plant Cell. 23: 3911-28. PMID 22128122 DOI: 10.1105/Tpc.111.092882 |
0.764 |
|
| 2011 |
Endler A, Baginsky S. Use of phosphoproteomics to study posttranslational protein modifications in Arabidopsis chloroplasts. Methods in Molecular Biology (Clifton, N.J.). 775: 283-96. PMID 21863449 DOI: 10.1007/978-1-61779-237-3_15 |
0.392 |
|
| 2011 |
Reiland S, Finazzi G, Endler A, Willig A, Baerenfaller K, Grossmann J, Gerrits B, Rutishauser D, Gruissem W, Rochaix JD, Baginsky S. Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF). Proceedings of the National Academy of Sciences of the United States of America. 108: 12955-60. PMID 21768351 DOI: 10.1073/Pnas.1104734108 |
0.769 |
|
| 2011 |
Gfeller A, Baerenfaller K, Loscos J, Chételat A, Baginsky S, Farmer EE. Jasmonate controls polypeptide patterning in undamaged tissue in wounded Arabidopsis leaves. Plant Physiology. 156: 1797-807. PMID 21693672 DOI: 10.1104/pp.111.181008 |
0.704 |
|
| 2011 |
Reiland S, Grossmann J, Baerenfaller K, Gehrig P, Nunes-Nesi A, Fernie AR, Gruissem W, Baginsky S. Integrated proteome and metabolite analysis of the de-etiolation process in plastids from rice (Oryza sativa L.). Proteomics. 11: 1751-63. PMID 21433289 DOI: 10.1002/Pmic.201000703 |
0.792 |
|
| 2011 |
Baerenfaller K, Hirsch-Hoffmann M, Svozil J, Hull R, Russenberger D, Bischof S, Lu Q, Gruissem W, Baginsky S. pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana. Integrative Biology : Quantitative Biosciences From Nano to Macro. 3: 225-37. PMID 21264403 DOI: 10.1039/C0Ib00078G |
0.764 |
|
| 2011 |
Infanger S, Bischof S, Hiltbrunner A, Agne B, Baginsky S, Kessler F. The chloroplast import receptor Toc90 partially restores the accumulation of Toc159 client proteins in the Arabidopsis thaliana ppi2 mutant. Molecular Plant. 4: 252-63. PMID 21220583 DOI: 10.1093/mp/ssq071 |
0.741 |
|
| 2011 |
Joshi HJ, Hirsch-Hoffmann M, Baerenfaller K, Gruissem W, Baginsky S, Schmidt R, Schulze WX, Sun Q, van Wijk KJ, Egelhofer V, Wienkoop S, Weckwerth W, Bruley C, Rolland N, Toyoda T, et al. MASCP Gator: an aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiology. 155: 259-70. PMID 21075962 DOI: 10.1104/Pp.110.168195 |
0.751 |
|
| 2010 |
Wienkoop S, Baginsky S, Weckwerth W. Arabidopsis thaliana as a model organism for plant proteome research. Journal of Proteomics. 73: 2239-48. PMID 20692386 DOI: 10.1016/j.jprot.2010.07.012 |
0.335 |
|
| 2010 |
Agne B, Andrès C, Montandon C, Christ B, Ertan A, Jung F, Infanger S, Bischof S, Baginsky S, Kessler F. The acidic A-domain of Arabidopsis TOC159 occurs as a hyperphosphorylated protein. Plant Physiology. 153: 1016-30. PMID 20457805 DOI: 10.1104/Pp.110.158048 |
0.684 |
|
| 2010 |
Baginsky S, Hennig L, Zimmermann P, Gruissem W. Gene expression analysis, proteomics, and network discovery. Plant Physiology. 152: 402-10. PMID 20018595 DOI: 10.1104/Pp.109.150433 |
0.732 |
|
| 2009 |
Baginsky S, Gruissem W. The chloroplast kinase network: new insights from large-scale phosphoproteome profiling. Molecular Plant. 2: 1141-53. PMID 19995723 DOI: 10.1093/Mp/Ssp058 |
0.567 |
|
| 2009 |
Reiland S, Messerli G, Baerenfaller K, Gerrits B, Endler A, Grossmann J, Gruissem W, Baginsky S. Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiology. 150: 889-903. PMID 19376835 DOI: 10.1104/Pp.109.138677 |
0.771 |
|
| 2009 |
Endler A, Reiland S, Gerrits B, Schmidt UG, Baginsky S, Martinoia E. In vivo phosphorylation sites of barley tonoplast proteins identified by a phosphoproteomic approach. Proteomics. 9: 310-21. PMID 19142958 DOI: 10.1002/pmic.200800323 |
0.356 |
|
| 2009 |
Baginsky S. Plant proteomics: concepts, applications, and novel strategies for data interpretation. Mass Spectrometry Reviews. 28: 93-120. PMID 18618656 DOI: 10.1002/mas.20183 |
0.398 |
|
| 2008 |
Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S. Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics. Science (New York, N.Y.). 320: 938-41. PMID 18436743 DOI: 10.1126/Science.1157956 |
0.806 |
|
| 2007 |
Grossmann J, Fischer B, Baerenfaller K, Owiti J, Buhmann JM, Gruissem W, Baginsky S. A workflow to increase the detection rate of proteins from unsequenced organisms in high-throughput proteomics experiments. Proteomics. 7: 4245-54. PMID 18040981 DOI: 10.1002/Pmic.200700474 |
0.76 |
|
| 2007 |
Roos FF, Jacob R, Grossmann J, Fischer B, Buhmann JM, Gruissem W, Baginsky S, Widmayer P. PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra. Bioinformatics (Oxford, England). 23: 3016-23. PMID 17768164 DOI: 10.1093/Bioinformatics/Btm417 |
0.691 |
|
| 2007 |
Schmidt UG, Endler A, Schelbert S, Brunner A, Schnell M, Neuhaus HE, Marty-Mazars D, Marty F, Baginsky S, Martinoia E. Novel tonoplast transporters identified using a proteomic approach with vacuoles isolated from cauliflower buds. Plant Physiology. 145: 216-29. PMID 17660356 DOI: 10.1104/pp.107.096917 |
0.404 |
|
| 2007 |
Baginsky S, Grossmann J, Gruissem W. Proteome analysis of chloroplast mRNA processing and degradation. Journal of Proteome Research. 6: 809-20. PMID 17269737 DOI: 10.1021/Pr060473Q |
0.702 |
|
| 2007 |
Mayer D, Molawi K, Martínez-Sobrido L, Ghanem A, Thomas S, Baginsky S, Grossmann J, García-Sastre A, Schwemmle M. Identification of cellular interaction partners of the influenza virus ribonucleoprotein complex and polymerase complex using proteomic-based approaches. Journal of Proteome Research. 6: 672-82. PMID 17269724 DOI: 10.1021/pr060432u |
0.594 |
|
| 2007 |
Kleffmann T, von Zychlinski A, Russenberger D, Hirsch-Hoffmann M, Gehrig P, Gruissem W, Baginsky S. Proteome dynamics during plastid differentiation in rice. Plant Physiology. 143: 912-23. PMID 17189339 DOI: 10.1104/Pp.106.090738 |
0.602 |
|
| 2006 |
Siddique MA, Grossmann J, Gruissem W, Baginsky S. Proteome analysis of bell pepper (Capsicum annuum L.) chromoplasts. Plant & Cell Physiology. 47: 1663-73. PMID 17098784 DOI: 10.1093/Pcp/Pcl033 |
0.757 |
|
| 2006 |
Fischer B, Grossmann J, Roth V, Gruissem W, Baginsky S, Buhmann JM. Semi-supervised LC/MS alignment for differential proteomics. Bioinformatics (Oxford, England). 22: e132-40. PMID 16873463 DOI: 10.1093/Bioinformatics/Btl219 |
0.692 |
|
| 2006 |
Baginsky S, Gruissem W. Arabidopsis thaliana proteomics: from proteome to genome. Journal of Experimental Botany. 57: 1485-91. PMID 16551684 DOI: 10.1093/Jxb/Erj130 |
0.643 |
|
| 2006 |
Kleffmann T, Hirsch-Hoffmann M, Gruissem W, Baginsky S. plprot: A comprehensive proteome database for different plastid types Plant and Cell Physiology. 47: 432-436. PMID 16418230 DOI: 10.1093/Pcp/Pcj005 |
0.597 |
|
| 2006 |
Nesvizhskii AI, Roos FF, Grossmann J, Vogelzang M, Eddes JS, Gruissem W, Baginsky S, Aebersold R. Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides. Molecular & Cellular Proteomics : McP. 5: 652-70. PMID 16352522 DOI: 10.1074/Mcp.M500319-Mcp200 |
0.712 |
|
| 2005 |
Fischer B, Roth V, Roos F, Grossmann J, Baginsky S, Widmayer P, Gruissem W, Buhmann JM. NovoHMM: a hidden Markov model for de novo peptide sequencing. Analytical Chemistry. 77: 7265-73. PMID 16285674 DOI: 10.1021/Ac0508853 |
0.672 |
|
| 2005 |
Grossmann J, Roos FF, Cieliebak M, Lipták Z, Mathis LK, Müller M, Gruissem W, Baginsky S. AUDENS: A tool for automated peptide de novo sequencing Journal of Proteome Research. 4: 1768-1774. PMID 16212431 DOI: 10.1021/Pr050070A |
0.678 |
|
| 2005 |
von Zychlinski A, Kleffmann T, Krishnamurthy N, Sjölander K, Baginsky S, Gruissem W. Proteome analysis of the rice etioplast: metabolic and regulatory networks and novel protein functions. Molecular & Cellular Proteomics : McP. 4: 1072-84. PMID 15901827 DOI: 10.1074/Mcp.M500018-Mcp200 |
0.647 |
|
| 2005 |
Baginsky S, Kleffmann T, Von Zychlinski A, Gruissem W. Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts Journal of Proteome Research. 4: 637-640. PMID 15822946 DOI: 10.1021/Pr049764U |
0.651 |
|
| 2004 |
Baginsky S, Siddique A, Gruissem W. Proteome analysis of tobacco bright yellow-2 (BY-2) cell culture plastids as a model for undifferentiated heterotrophic plastids Journal of Proteome Research. 3: 1128-1137. PMID 15595721 DOI: 10.1021/Pr0499186 |
0.618 |
|
| 2004 |
Stenger D, Gruissem W, Baginsky S. Mass spectrometric identification of RNA binding proteins from dried EMSA gels Journal of Proteome Research. 3: 662-664. PMID 15253451 DOI: 10.1021/Pr049966Q |
0.547 |
|
| 2004 |
Kleffmann T, Russenberger D, von Zychlinski A, Christopher W, Sjölander K, Gruissem W, Baginsky S. The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Current Biology : Cb. 14: 354-62. PMID 15028209 DOI: 10.1016/J.Cub.2004.02.039 |
0.633 |
|
| 2004 |
Baginsky S, Gruissem W. Chloroplast proteomics: Potentials and challenges Journal of Experimental Botany. 55: 1213-1220. PMID 15020636 DOI: 10.1093/Jxb/Erh104 |
0.63 |
|
| 2002 |
Baginsky S, Gruissem W. Endonucleolytic activation directs dark-induced chloroplast mRNA degradation Nucleic Acids Research. 30: 4527-4533. PMID 12384600 DOI: 10.1093/Nar/Gkf561 |
0.526 |
|
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