| Year |
Citation |
Score |
| 2025 |
Muratspahić E, Feldman D, Kim DE, Qu X, Bratovianu AM, Rivera-Sánchez P, Dimitri F, Cao J, Cary BP, Belousoff MJ, Keov P, Chen Q, Ren Y, Fine J, Sappington I, ... ... Lee GR, et al. design of miniprotein agonists and antagonists targeting G protein-coupled receptors. Biorxiv : the Preprint Server For Biology. PMID 40501737 DOI: 10.1101/2025.03.23.644666 |
0.308 |
|
| 2025 |
Dauparas J, Lee GR, Pecoraro R, An L, Anishchenko I, Glasscock C, Baker D. Atomic context-conditioned protein sequence design using LigandMPNN. Nature Methods. PMID 40155723 DOI: 10.1038/s41592-025-02626-1 |
0.317 |
|
| 2024 |
Song DH, Song CW, Cho SH, Kwon TY, Jung H, Park KH, Kim J, Seo J, Yoo J, Kim M, Lee GR, Hwang J, Lee HM, Shin J, Shin JH, et al. Highly Tunable, Nanomaterial-Functionalized Structural Templating of Intracellular Protein Structures Within Biological Species. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2406492. PMID 39535386 DOI: 10.1002/advs.202406492 |
0.389 |
|
| 2024 |
Anishchenko I, Kipnis Y, Kalvet I, Zhou G, Krishna R, Pellock SJ, Lauko A, Lee GR, An L, Dauparas J, DiMaio F, Baker D. Modeling protein-small molecule conformational ensembles with ChemNet. Biorxiv : the Preprint Server For Biology. PMID 39386615 DOI: 10.1101/2024.09.25.614868 |
0.416 |
|
| 2024 |
Mansoor S, Baek M, Park H, Lee GR, Baker D. Protein Ensemble Generation Through Variational Autoencoder Latent Space Sampling. Journal of Chemical Theory and Computation. PMID 38547871 DOI: 10.1021/acs.jctc.3c01057 |
0.806 |
|
| 2024 |
Krishna R, Wang J, Ahern W, Sturmfels P, Venkatesh P, Kalvet I, Lee GR, Morey-Burrows FS, Anishchenko I, Humphreys IR, McHugh R, Vafeados D, Li X, Sutherland GA, Hitchcock A, et al. Generalized biomolecular modeling and design with RoseTTAFold All-Atom. Science (New York, N.Y.). eadl2528. PMID 38452047 DOI: 10.1126/science.adl2528 |
0.731 |
|
| 2022 |
Lee S, Kim S, Lee GR, Kwon S, Woo H, Seok C, Park H. Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction. Computational and Structural Biotechnology Journal. 21: 158-167. PMID 36544468 DOI: 10.1016/j.csbj.2022.11.057 |
0.736 |
|
| 2021 |
Baek M, DiMaio F, Anishchenko I, Dauparas J, Ovchinnikov S, Lee GR, Wang J, Cong Q, Kinch LN, Schaeffer RD, Millán C, Park H, Adams C, Glassman CR, DeGiovanni A, et al. Accurate prediction of protein structures and interactions using a three-track neural network. Science (New York, N.Y.). PMID 34282049 DOI: 10.1126/science.abj8754 |
0.809 |
|
| 2020 |
An L, Lee GR. De Novo Protein Design Using the Blueprint Builder in Rosetta. Current Protocols in Protein Science. 102: e116. PMID 33320432 DOI: 10.1002/cpps.116 |
0.321 |
|
| 2019 |
Park H, Lee GR, Kim DE, Anishchanka I, Cong Q, Baker D. High-accuracy refinement using Rosetta in CASP13. Proteins. PMID 31325340 DOI: 10.1002/Prot.25784 |
0.756 |
|
| 2019 |
Lee GR, Won J, Heo L, Seok C. GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure. Nucleic Acids Research. PMID 31001635 DOI: 10.1093/nar/gkz288 |
0.797 |
|
| 2018 |
Bang I, Kim HR, Beaven AH, Kim J, Ko SB, Lee GR, Lee H, Im W, Seok C, Chung KY, Choi HJ. Biophysical and functional characterization of Norrin signaling through Frizzled4. Proceedings of the National Academy of Sciences of the United States of America. PMID 30104375 DOI: 10.1073/Pnas.1805901115 |
0.748 |
|
| 2018 |
Keasar C, McGuffin LJ, Wallner B, Chopra G, Adhikari B, Bhattacharya D, Blake L, Bortot LO, Cao R, Dhanasekaran BK, Dimas I, Faccioli RA, Faraggi E, Ganzynkowicz R, Ghosh S, ... ... Lee GR, et al. An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12. Scientific Reports. 8: 9939. PMID 29967418 DOI: 10.1038/s41598-018-26812-8 |
0.786 |
|
| 2018 |
Won J, Lee GR, Park H, Seok C. GalaxyGPCRloop: Template-based and Ab Initio Structure Sampling of the Extracellular Loops of G-protein-coupled Receptors. Journal of Chemical Information and Modeling. PMID 29786430 DOI: 10.1021/acs.jcim.8b00148 |
0.782 |
|
| 2017 |
Lee GR, Heo L, Seok C. Simultaneous refinement of inaccurate local regions and overall structure in the CASP12 protein model refinement experiment. Proteins. PMID 29044810 DOI: 10.1002/prot.25404 |
0.833 |
|
| 2017 |
Shao X, Kang H, Loveless T, Lee GR, Seok C, Weis WI, Choi HJ, Hardin J. Structural and functional characterization of the α-catenin·β-catenin binding interface in Caenorhabditis elegans reveals conserved requirements for cell-cell adhesion in metazoans. The Journal of Biological Chemistry. PMID 28842483 DOI: 10.1074/Jbc.M117.795567 |
0.593 |
|
| 2017 |
Xu Q, Tang Q, Katsonis P, Lichtarge O, Jones D, Bovo S, Babbi G, Martelli PL, Casadio R, Lee GR, Seok C, Fenton AW, Dunbrack RL. Benchmarking predictions of allostery in liver pyruvate kinase in CAGI4. Human Mutation. PMID 28370845 DOI: 10.1002/Humu.23222 |
0.59 |
|
| 2016 |
Lee H, Baek M, Lee GR, Park S, Seok C. Template-based Modeling and Ab Initio Refinement of Protein Oligomer Structures using GALAXY in CAPRI Round 30. Proteins. PMID 27770545 DOI: 10.1002/prot.25192 |
0.802 |
|
| 2016 |
Lee GR, Seok C. Galaxy7TM: flexible GPCR-ligand docking by structure refinement. Nucleic Acids Research. PMID 27131365 DOI: 10.1093/nar/gkw360 |
0.717 |
|
| 2015 |
Shin WH, Lee GR, Seok C. Evaluation of GalaxyDock based on the Community Structure-Activity Resource 2013 and 2014 Benchmark Studies. Journal of Chemical Information and Modeling. PMID 26583962 DOI: 10.1021/acs.jcim.5b00309 |
0.784 |
|
| 2015 |
Lee GR, Heo L, Seok C. Effective protein model structure refinement by loop modeling and overall relaxation. Proteins. 293-301. PMID 26172288 DOI: 10.1002/prot.24858 |
0.842 |
|
| 2014 |
Park H, Lee GR, Heo L, Seok C. Protein loop modeling using a new hybrid energy function and its application to modeling in inaccurate structural environments. Plos One. 9: e113811. PMID 25419655 DOI: 10.1371/journal.pone.0113811 |
0.833 |
|
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