| Year |
Citation |
Score |
| 2024 |
Zhang N, Sood D, Guo SC, Chen N, Antoszewski A, Marianchuk T, Dey S, Xiao Y, Hong L, Peng X, Baxa M, Partch C, Wang LP, Sosnick TR, Dinner AR, et al. Temperature-dependent fold-switching mechanism of the circadian clock protein KaiB. Proceedings of the National Academy of Sciences of the United States of America. 121: e2412327121. PMID 39671178 DOI: 10.1073/pnas.2412327121 |
0.737 |
|
| 2024 |
Zhang N, Sood D, Guo SC, Chen N, Antoszewski A, Marianchuk T, Chavan A, Dey S, Xiao Y, Hong L, Peng X, Baxa M, Partch C, Wang LP, Sosnick TR, et al. Temperature-Dependent Fold-Switching Mechanism of the Circadian Clock Protein KaiB. Biorxiv : the Preprint Server For Biology. PMID 38826295 DOI: 10.1101/2024.05.21.594594 |
0.737 |
|
| 2023 |
Faruk NF, Peng X, Sosnick TR. Factors That Control the Force Needed to Unfold a Membrane Protein in Silico Depend on the Mode of Denaturation. International Journal of Molecular Sciences. 24. PMID 36768981 DOI: 10.3390/ijms24032654 |
0.711 |
|
| 2022 |
Faruk NF, Peng X, Freed KF, Roux B, Sosnick TR. Challenges and Advantages of Accounting for Backbone Flexibility in Prediction of Protein-Protein Complexes. Journal of Chemical Theory and Computation. 18: 2016-2032. PMID 35213808 DOI: 10.1021/acs.jctc.1c01255 |
0.711 |
|
| 2022 |
Gaffney KA, Guo R, Bridges MD, Muhammednazaar S, Chen D, Kim M, Yang Z, Schilmiller AL, Faruk NF, Peng X, Jones AD, Kim KH, Sun L, Hubbell WL, Sosnick TR, et al. Lipid bilayer induces contraction of the denatured state ensemble of a helical-bundle membrane protein. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 34969836 DOI: 10.1073/pnas.2109169119 |
0.724 |
|
| 2021 |
Peng X, Baxa M, Faruk N, Sachleben JR, Pintscher S, Gagnon IA, Houliston S, Arrowsmith CH, Freed KF, Rocklin GJ, Sosnick TR. Prediction and Validation of a Protein's Free Energy Surface Using Hydrogen Exchange and (Importantly) Its Denaturant Dependence. Journal of Chemical Theory and Computation. PMID 34936354 DOI: 10.1021/acs.jctc.1c00960 |
0.638 |
|
| 2018 |
Peng X, Zhang Y, Li Y, Liu Q, Chu H, Zhang D, Li G. Integrating Multiple Accelerated Molecular Dynamics to Improve Accuracy of Free Energy Calculation. Journal of Chemical Theory and Computation. PMID 29394067 DOI: 10.1021/Acs.Jctc.7B01211 |
0.309 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2021 |
Wang A, Peng X, Li Y, Zhang D, Zhang Z, Li G. Quality of force fields and sampling methods in simulating pepX peptides: a case study for intrinsically disordered proteins. Physical Chemistry Chemical Physics : Pccp. PMID 33459730 DOI: 10.1039/d0cp05484d |
0.289 |
|
| 2016 |
Peng X, Zhang Y, Chu H, Li Y, Zhang D, Cao L, Li G. Accurate evaluation of ion conductivity of gramicidin A channel using polarizable force field without any corrections. Journal of Chemical Theory and Computation. PMID 27171823 DOI: 10.1021/Acs.Jctc.6B00128 |
0.284 |
|
| 2017 |
Chu H, Peng X, Li Y, Zhang Y, Li G. A Polarizable Atomic Multipole-Based Force Field for Molecular Dynamics Simulations of Anionic Lipids. Molecules (Basel, Switzerland). 23. PMID 29301229 DOI: 10.3390/Molecules23010077 |
0.269 |
|
| 2024 |
Li F, Liu J, Liu C, Liu Z, Peng X, Huang Y, Chen X, Sun X, Wang S, Chen W, Xiong D, Diao X, Wang S, Zhuang J, Wu C, et al. Cyclic peptides discriminate BCL-2 and its clinical mutants from BCL-X by engaging a single-residue discrepancy. Nature Communications. 15: 1476. PMID 38368459 DOI: 10.1038/s41467-024-45848-1 |
0.26 |
|
| 2024 |
Wang Z, Zhou F, Wang Z, Hu Q, Li YQ, Wang S, Wei Y, Zheng L, Li W, Peng X. Fully Flexible Molecular Alignment Enables Accurate Ligand Structure Modeling. Journal of Chemical Information and Modeling. PMID 39074901 DOI: 10.1021/acs.jcim.4c00669 |
0.25 |
|
| 2015 |
Peng X, Zhang Y, Chu H, Li G. Free energy simulations with the AMOEBA polarizable force field and metadynamics on GPU platform. Journal of Computational Chemistry. PMID 26493154 DOI: 10.1002/Jcc.24227 |
0.224 |
|
| 2018 |
Lan P, Tan M, Zhang Y, Niu S, Chen J, Shi S, Qiu S, Wang X, Peng X, Cai G, Cheng H, Wu J, Li G, Lei M. Structural insight into precursor tRNA processing by yeast ribonuclease P. Science (New York, N.Y.). PMID 30262633 DOI: 10.1126/Science.Aat6678 |
0.16 |
|
| 2025 |
Chen A, Peng X, Shen T, Zheng L, Wu D, Wang S. Discovery, design, and engineering of enzymes based on molecular retrobiosynthesis. Mlife. 4: 107-125. PMID 40313979 DOI: 10.1002/mlf2.70009 |
0.141 |
|
| 2025 |
Li F, Zhang M, Liu C, Cheng J, Yang Y, Peng X, Li Z, Cai W, Yu H, Wu J, Guo Y, Geng H, Fa Y, Zhang Y, Wu D, et al. De novo discovery of a molecular glue-like macrocyclic peptide that induces MCL1 homodimerization. Proceedings of the National Academy of Sciences of the United States of America. 122: e2426006122. PMID 40131955 DOI: 10.1073/pnas.2426006122 |
0.123 |
|
| 2024 |
Li N, Gong N, Duan B, Zhang Y, Jian Y, Xu Y, Liu J, Wang X, Zhang X, Du M, Zhou F, Zhao J, Guan X, Peng X, Wang S, et al. Reduction of circulating IgE and allergens by a pH-sensitive antibody with enhanced FcγRIIb binding. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 39228125 DOI: 10.1016/j.ymthe.2024.08.029 |
0.068 |
|
| 2024 |
Wu J, Wang Y, Cai W, Chen D, Peng X, Dong H, Li J, Liu H, Shi S, Tang S, Li Z, Sui H, Wang Y, Wu C, Zhang Y, et al. Ribosomal translation of fluorinated non-canonical amino acids for biologically active fluorinated macrocyclic peptides. Chemical Science. PMID 39129776 DOI: 10.1039/d4sc04061a |
0.062 |
|
| 2015 |
Yang Y, Li G, Zhao D, Yu H, Zheng X, Peng X, Zhang X, Fu T, Hu X, Niu M, Ji X, Zou L, Wang J. Computational discovery and experimental verification of tyrosine kinase inhibitor pazopanib for the reversal of memory and cognitive deficits in rat model neurodegeneration. Chemical Science. 6: 2812-2821. PMID 28706670 DOI: 10.1039/C4Sc03416C |
0.045 |
|
| Hide low-probability matches. |