Han-Yu Chuang, Ph.D.

Bioinformatics University of California, San Diego, La Jolla, CA 
computational biology
"Han-Yu Chuang"


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Trey Ideker grad student 2010 UCSD
 (Pathway-based modeling and diagnosis of cancer development and progression.)
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Lee K, Byun K, Hong W, et al. (2013) Proteome-wide discovery of mislocated proteins in cancer. Genome Research. 23: 1283-94
Chuang HY, Rassenti L, Salcedo M, et al. (2012) Subnetwork-based analysis of chronic lymphocytic leukemia identifies pathways that associate with disease progression. Blood. 120: 2639-49
Zhang S, Chen L, Cui B, et al. (2012) ROR1 is expressed in human breast cancer and associated with enhanced tumor-cell growth. Plos One. 7: e31127
Zhang W, Kater AP, Widhopf GF, et al. (2010) B-cell activating factor and v-Myc myelocytomatosis viral oncogene homolog (c-Myc) influence progression of chronic lymphocytic leukemia. Proceedings of the National Academy of Sciences of the United States of America. 107: 18956-60
Chuang HY, Hofree M, Ideker T. (2010) A decade of systems biology. Annual Review of Cell and Developmental Biology. 26: 721-44
Enzler T, Kater AP, Zhang W, et al. (2009) Chronic lymphocytic leukemia of Emu-TCL1 transgenic mice undergoes rapid cell turnover that can be offset by extrinsic CD257 to accelerate disease progression. Blood. 114: 4469-76
Lee E, Chuang HY, Kim JW, et al. (2008) Inferring pathway activity toward precise disease classification. Plos Computational Biology. 4: e1000217
Lee K, Chuang HY, Beyer A, et al. (2008) Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species. Nucleic Acids Research. 36: e136
Chuang HY, Lee E, Liu YT, et al. (2007) Network-based classification of breast cancer metastasis. Molecular Systems Biology. 3: 140
Overbeek R, Begley T, Butler RM, et al. (2005) The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Research. 33: 5691-702
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