Raymond K. Auerbach, Ph.D.

Computational Biology and Bioinformatics Yale University, New Haven, CT 
Computational Biology and Bioinformatics
"Raymond Auerbach"


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Mark B. Gerstein grad student 2012 Yale
 (Elucidating Transcriptional Regulation Using High-Throughput Sequencing, Data Integration, and Computational Models.)
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Gerstein MB, Rozowsky J, Yan KK, et al. (2014) Comparative analysis of the transcriptome across distant species. Nature. 512: 445-8
Ehmer U, Zmoos AF, Auerbach RK, et al. (2014) Organ size control is dominant over Rb family inactivation to restrict proliferation in vivo. Cell Reports. 8: 371-81
Auerbach RK, Chen B, Butte AJ. (2013) Relating genes to function: identifying enriched transcription factors using the ENCODE ChIP-Seq significance tool. Bioinformatics (Oxford, England). 29: 1922-4
Lefrançois P, Auerbach RK, Yellman CM, et al. (2013) Centromere-like regions in the budding yeast genome. Plos Genetics. 9: e1003209
Auerbach RK. (2012) Thriving in multidisciplinary research: advice for new bioinformatics students. The Yale Journal of Biology and Medicine. 85: 323-9
Euskirchen G, Auerbach RK, Snyder M. (2012) SWI/SNF chromatin-remodeling factors: multiscale analyses and diverse functions. The Journal of Biological Chemistry. 287: 30897-905
Li G, Ruan X, Auerbach RK, et al. (2012) Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation. Cell. 148: 84-98
Sboner A, Mu XJ, Greenbaum D, et al. (2011) The real cost of sequencing: higher than you think! Genome Biology. 12: 125
Euskirchen GM, Auerbach RK, Davidov E, et al. (2011) Diverse roles and interactions of the SWI/SNF chromatin remodeling complex revealed using global approaches. Plos Genetics. 7: e1002008
Lu ZJ, Yip KY, Wang G, et al. (2011) Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Research. 21: 276-85
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