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| Ferrer-Costa C, Shanahan HP, Jones S, et al. (2005) HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif. Bioinformatics (Oxford, England). 21: 3679-80 |
| Shanahan HP, Thornton JM. (2005) Amino acid architecture and the distribution of polar atoms on the surfaces of proteins. Biopolymers. 78: 318-28 |
| Shanahan HP, Garcia MA, Jones S, et al. (2004) Identifying DNA-binding proteins using structural motifs and the electrostatic potential. Nucleic Acids Research. 32: 4732-41 |
| Shanahan HP, Thornton JM. (2004) An examination of the conservation of surface patch polarity for proteins. Bioinformatics (Oxford, England). 20: 2197-204 |
| Jones S, Shanahan HP, Berman HM, et al. (2003) Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. Nucleic Acids Research. 31: 7189-98 |