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| Alyaa M Abdel-haleem | constraint-based metabolic modeling, infectious diseases | | | | Neema Jamshidi (grad student), Nathan Enoch Lewis (grad student) |
| Nina Agabian | Microbial Pathogenesis | | | | Lucy Shapiro (post-doc), Boris Magasanik (grad student) |
| Eric Althoff | | | 1997 | 1999 | Nien-Chu C. Yang (grad student) |
| Ingemar Andre | | | | | |
| Eric L. Anson | | | | | |
| Ozgun Babur | Computational Biology, Systems Biology, Biological Pathways, Proteomics, Causality Analysis | | 2010 | 2016 | Chris Sander (post-doc) |
| Herbert Baier | | | | | Jörg Schulz (post-doc) |
| Amos Bairoch | | | 1984 | 1989 | Robin E. Offord (grad student) |
| Archana Bajpai | | | | | Hiroaki Kitano (post-doc) |
| Rosa Hernansaiz Ballesteros | | | | | Julio Saez-Rodriguez (post-doc) |
| Yih-En Andrew Ban | | | | | |
| Patrick Barth | | | | | |
| Matthew Bashton | | | | | Janet M. Thornton (post-doc) |
| Alex Bateman | | | | | |
| Michael Baym | Antibiotic resistance, evolution, algorithms | | | | Bonnie Berger (grad student), Roy Kishony (post-doc) |
| Eric Blanc | | | | | Janet M. Thornton (research scientist) |
| Pia Borlund | | | | 2000 | Peter Ingwersen (grad student) |
| Erich Bornberg-Bauer | Molecular evolution, Biochemistry, Bioinformatics, Genomics | Harvard MPI Berlin | 1997 | 1999 | Peter Schuster (grad student), Walter Fontana (grad student), Martin Vingron (post-doc) |
| Stéphanie Boué | | | | | |
| Peter Bowers | | | | | |
| John Boyle | | | | | |
| Phil Bradley | | | | | |
| Natalie W. Breakfield | Bioinformatics, Genetics | | | 2011 | Philip N. Benfey (grad student) |
| Nigel Brown | | | | | |
| Elizabeth Brunk | | | 2014 | 2017 | Bernhard O. Palsson (post-doc) |
| Gopalakrishnan Bulusu | Molecular Modelling, Drug Design, Bioinformatics, Structural Biology, Biophysics | Molecular Biophysics Unit | 1983 | 1989 | Manju Bansal (grad student) |
| Frederic D. Bushman | Bioinformatics, Molecular Biology, Immunology | | | | Mark Ptashne (grad student) |
| Atul J. Butte | | | 1998 | 2004 | Isaac Kohane (grad student) |
| Lutgarde Buydens | | | | | Désiré Luc Massart (grad student) |
| Marta Byrska-Bishop | | | | | Marylyn D. Ritchie (post-doc) |
| Christopher Bystroff | | | | | |
| Laurence Calzone | cell cycle modeling | | | | Béla Novák (post-doc) |
| Monica Campillos | | | | | |
| Sean B. Carroll | evolution | | | | Matthew P. Scott (post-doc) |
| Raphael AG Chaleil | Computational Biology | | | | |
| Oliver Chan | | | 2011 | 2014 | Maurice HT Ling (research assistant) |
| Deepak Chandran | | | | | |
| Zhu En Chay | COPADS, Analytics | | 2010 | 2013 | Maurice HT Ling (research assistant) |
| Rui Chen | | | | | |
| Jieming Chen | | | 2010 | 2016 | Mark B. Gerstein (grad student), Lynne Joy Regan (grad student) |
| Guo-Liang Chew | | | 2011 | 2015 | Alexander Schier (grad student), Hidde L. Ploegh (research assistant) |
| Davide Cirillo | Network biology, Data integration, Machine Learning | | 2017 | | Alfonso Valencia (post-doc) |
| Luis Pedro Coelho | Computational Biology | | 2013 | 2018 | Peer Bork (post-doc) |
| Kevin D. Costa | cardiac biomechanics, tissue engineering, atomic force microscopy | | | | Frank Yin (post-doc) |
| Gregory E Crawford | | | | | Francis Sellers Collins (post-doc), Jeffrey Chamberlain (grad student) |
| Attila Csikász-Nagy | systems biology | | | | John Tyson (post-doc) |
| Miroslava Cuperlovic-culf | Computational biology, bioinformatics, metabolomics, machine learning, lipidomics | | | | |
| Miroslava Cuperlovic-culf | Computational biology, bioinformatics, metabolomics, machine learning, lipidomics | | | | |
| Vishaka Datta | | | | | Sandeep Krishna (grad student) |
| Jose Davila-Velderrain | Computational biology, systems biology, neurogenomics | | | | Manolis Kellis (post-doc) |
| Ian Davis | | | | | |
| Gustavo Deco | Computational Neuroscience | | | | Roberto Rivarola (grad student) |
| Yolande Diaz-Lazcoz | | | | | |
| Eizaburo Doi | Computation & Theory | | 2022 | | Yukiyasu Kamitani (research scientist) |
| Igor Dolgalev | | | | | Aristotelis Tsirigos (grad student), Iannis Aifantis (grad student) |
| Paul Dupree | polysaccharides, Golgi, glycosyltransferases, plant cell walls | | 1991 | 1993 | Kai Simons (post-doc) |
| Heidi Dvinge | | | 2004 | 2006 | Kalim Mir (research assistant) |
| Birgit Eisenhaber | | | | | |
| John Ellis | | | | | |
| Mario A. Fares | | | 1998 | 2002 | Andres Moya (grad student), Kenneth H. Wolfe (grad student) |
| Gabriel Fernandes | | | | | |
| Robert M. Flight | Computational Biology | Chemistry | 2010 | 2012 | Eric C. Rouchka (post-doc), Peter D. Wentzell (grad student), Ghislain Deslongchamps (grad student) |
| Walter Fontana | | | | | |
| Konrad Ulrich Förstner | Systems biology, Infection research, Bioinformatics, RNA-regulation | | 2003 | 2004 | Jörg Bernhardt (grad student) |
| Wilhelm Ludwig Franz | | | | | |
| Shiri Freilich | | | | | Janet M. Thornton (grad student) |
| Kate S Gaudry | Computational Neuroscience, Vision; Intellectual property, patent law | | | | |
| Ulrike Gaul | | | | | Gerald M. Rubin (post-doc) |
| Fabian Gerick | | | | | Janet M. Thornton (grad student) |
| Ernst Dieter Gilles | | | | | Winfried Oppelt (grad student) |
| Fabian Glaser | | | | | Janet M. Thornton (research scientist) |
| Loyal A. Goff | | | | | John Rinn (post-doc) |
| Akshit Goyal | | | | | Sandeep Krishna (grad student) |
| Matthew Groves | Fragment Based Drug Discovery, Biophysics | | | | Tom Blundell (grad student) |
| Jiangtao Guo | | | | | Wenrui Chang (grad student) |
| Alex Gutteridge | | | | | Janet M. Thornton (grad student) |
| Artemis Hatzigeorgiou | | | | | |
| Jim Havranek | | | | | |
| Katharina Hayer | Bioinformatics, Computational Biology | | | | Andrei Thomas-Tikhonenko (research scientist) |
| Hedvig Hegyi | | | | | |
| J Bernard Heymann | Structural Biology, Electron Microscopy, Molecular Modeling | | | | Andreas Engel (post-doc), William A. Cramer (grad student), Alasdair C. Steven (research scientist), Peter C. Agre (collaborator), Roberto Marabini (collaborator), Steve Ludtke (collaborator), David M. Belnap (collaborator), Timothy S. Baker (post-doc), Jose Maria Carazo (collaborator), Paul A. Sieving (collaborator), Paul W. Keller (collaborator), Cristina V. Iancu (collaborator), Elizabeth R. Wright (collaborator), Grant J. Jensen (research scientist) |
| Christian Hoffmann | microbiology, computational biology, bioinformatics, molecular ecology | | 2010 | 2013 | Frederic D. Bushman (grad student), Frederic D. Bushman (research scientist) |
| Emily Holzinger | http://www.researchprofiles.collexis.com/jad/expert.asp?u_id=95 | | | | Marylyn D. Ritchie (grad student) |
| Ullrich Hübscher | | | | | Arthur Kornberg (post-doc) |
| Mudita Jain | | | | | |
| Sanjay Jain | | | | | Spenta Wadia (grad student) |
| Philippe Jeanteur | | | | | Guiseppe Attardi (grad student) |
| Youxing Jiang | | | | | Paul B. Sigler (grad student) |
| Sue Jones | | | | | Janet M. Thornton (post-doc) |
| Abdullah Kahraman | | | | | Janet M. Thornton (grad student) |
| Iman Kamali Sarvestani | Computational Neuroscience | Fundamental Neurobiology | 2016 | | Jeremie Lefebvre (post-doc) |
| Kang (Samuel) Kang | Bioinformatics, Genomics, Synthetic Biology, Microbiome | | 2018 | 2019 | Morten O. Sommer (research scientist), Markus Juhana Herrgard (research scientist), Jochen Förster (research scientist), Huanming Yang (grad student) |
| Gerrit Kateman | | | | | |
| John Kececioglu | | | | | |
| Libusha Kelly | | | | | |
| Bryan Keng | | | | | Maurice HT Ling (research assistant) |
| Nicola Kerrison | | | | | Janet M. Thornton (grad student) |
| Ozlem Keskin | computational biology, bioinformatics | | | | Ivet Bahar (grad student) |
| Seunghoon Kim | Cancer genomics/transcriptomics, microbiome analysis | | 2017 | 2023 | Semin Lee (grad student) |
| Jim Knight | | | | | |
| Michael R. Kosorok | | | | | Thomas R. Fleming (grad student) |
| Rachel Kraut | developmental neurobiology | | | | Michael Levine (grad student), Jose Campos-Ortega (post-doc) |
| Brian Kuhlman | | | | | |
| Sudhir Kumar | Molecular Evolution, Bioinformatics | | | | Sandhya Mitra (grad student) |
| Warren C. Lathe | | | | | |
| Andrew Leaver-Fay | | | | | |
| Christophe Lefevre | | | | | Michael Spencer Waterman (post-doc) |
| Ricardo B. Leite | marine; genomics; bioinformatics; molecular biology | | 2012 | 2018 | Jose B. Pereira-Leal (post-doc) |
| Hans-Peter Lenhof | | | | | Kurt Mehlhorn (grad student) |
| Lei Li | | | | | |
| Jun Liao | | | | | Robert F. Margolskee (post-doc) |
| Louis Licamele | | | | | Lise C. Getoor (grad student) |
| Suxing Liu | | | | | Argelia Lorence (post-doc) |
| Wolfgang Maass | computation & theory | | | | Kurt Schütte (grad student) |
| Malcom MacArthur | | | | | Janet M. Thornton (post-doc) |
| M S Madhusudhan | Computational biology, Bioinformatics | | 2001 | 2008 | Andrej Sali (post-doc) |
| Gerard Manning | Bioinformatics, Genomics, Oncology, Evolution | | 1989 | 1997 | Mark Krasnow (grad student) |
| Michael Martinez | | | | | Rebecca C Wade (post-doc) |
| Désiré Luc Massart | | | | | Julien Hoste (grad student) |
| Paul McGettigan | Bioinformatics, Genetics | | 2004 | 2010 | Des Higgins (grad student), Ciaran M. Regan (grad student) |
| Gerhard Mehldau | | | | | |
| Philip M. Meier | Computational Neuroscience, Vision | | | | |
| Daniel Mende | | | | | Edward F. DeLong (post-doc) |
| Paolo Mereghetti | | | | | Rebecca C Wade (post-doc) |
| Kira Misura | | | | | William Weis (grad student) |
| Carrie Buchanan Moore | | | | | Marylyn D. Ritchie (grad student) |
| Jason H. Moore | | | | | Charles Frederick Sing (grad student) |
| Enrique Morett | | | | | |
| Vladimir Maxovich Morozov | | | | | |
| Richard Morris | | | | | Janet M. Thornton (post-doc) |
| John Moult | | | | | |
| Jean Muller | | | | | |
| Kevin Murray | | | | | Janet M. Thornton (post-doc) |
| Ammar Naqvi | | | 2011 | 2016 | Eric Lai (research scientist), Joseph R. Ecker (research assistant), Nancy Mara Bonini (grad student), Brian D. Gregory (grad student) |
| Emre Ozgür Neftçi | Neuromorphic Engineering, Computational Neuroscience | | | | Elisabetta Chicca (grad student) |
| Quang P. Nguyen | Computational Biology | | | | Hildreth R. Frost (grad student) |
| Irilenia Nobeli | | | | | Janet M. Thornton (post-doc) |
| Vincent Noël | | | | | Laurence Calzone (grad student), Emmanuel Barillot (grad student) |
| Béla Novák | | | | | J. Murdoch Mitchison (research scientist) |
| Jason O'Rawe | | | | | |
| Uwe Ohler | Bioinformatics, Computer Science, Statistics | | | | Christopher B. Burge (post-doc), Gerald M. Rubin (grad student) |
| Winfried Oppelt | | | | | Richard Vieweg (grad student) |
| David A. Orlando | Bioinformatics, Genetics | | | 2009 | Philip N. Benfey (grad student) |
| Cleber C. Ouverney | | | | | David A. Relman (post-doc) |
| Christos Ouzounis | | | | | |
| Evangelos Pafilis | | | | | |
| Paul Pavlidis | Bioinformatics | | 1991 | 1994 | Mark Tanouye (grad student) |
| Georgios A. Pavlopoulos | | | | | |
| Sarah A. Pendergrass | | | | 2015 | Marylyn D. Ritchie (post-doc) |
| Antonio J. Perez | | | | | |
| Peter Pietrzyk | | | 2007 | 2009 | Roderik Lindenbergh (grad student) |
| Douglas E. V. Pires | Machine Learning, Bioinformatics, Cheminformatics | Department of Computer Science | 2009 | 2012 | Wagner Meira Jr. (grad student) |
| Davide Pisani | Phylogenomics | | | | Mark Wilkinson (grad student) |
| Hannes Ponstingl | | | | | Janet M. Thornton (grad student) |
| Craig Porter | | | | | Janet M. Thornton (post-doc) |
| Floria Raible | | | | | |
| Gayatri Ramakrishnan | Computational Biology | | 2021 | 2023 | Martijn A. Huynen (post-doc) |
| Andrea Ramirez | | | | | Francis Sellers Collins (post-doc) |
| Tom A. Rapoport | Endoplasmic Reticulum, Secretion | | | | Samuel Mitja Rapoport (grad student) |
| Gabrielle Reeves | | | | | Janet M. Thornton (research scientist) |
| Junkai Ren | | | | | |
| Matthew A. Richards | | | | | Nathan Daniel Price (grad student) |
| Marylyn D. Ritchie | | | | | |
| Daniella Roethlisberger | | | | | |
| Beatriz Sabater-Munoz | integrative systems biology | | 1998 | 2002 | Amparo Latorre (grad student), Mario A. Fares (collaborator) |
| Ruslan I. Sadreyev | bioinformatics | | | | Leonid L. Moroz (post-doc) |
| Sana Saifi | OpenVirus | | | | |
| Luis Sanchez | | | | | |
| Jon Sánchez | bioinformatics | | | | Alfonso Valencia (grad student) |
| Moid Sandhu | Sensor networks, wearable devices, energy harvesting | | 2018 | 2020 | Raja M. Jurdak (grad student) |
| Thomas Sauter | | | | | Ernst Dieter Gilles (grad student) |
| Reinhard Schneider | data integration, data management, parallel computing, visualisation | | 1990 | 1994 | Arthur M. Lesk (grad student) |
| Ora Schueler-Furman | | | | | |
| Eugene Schuster | | | | | Janet M. Thornton (research scientist) |
| Costas Sekeris | | | | | Peter Karlson (grad student) |
| Hugh Shanahan | | | | | Janet M. Thornton (post-doc) |
| Raunak Shrestha | Systems Biology, Cancer | | 2012 | 2018 | C Cenk Sahinalp (grad student) |
| Shelby Simpson | Computational Neuroscience, Visual System, EEG | | | | |
| Vaibhhav Sinha | | | | | Sandeep Krishna (grad student) |
| Jeffrey Skolnick | | | | | Marshall Fixman (grad student) |
| Shuhui Song | Bioinformatics | | | | Jun Yu (research scientist) |
| Neelesh Soni | Computational biology, Bioinformatics, machine leanring, biophysics | | 2013 | 2019 | M S Madhusudhan (grad student) |
| Vanita Sood | | | | | |
| Eliot Spindel | | | | | William W Chin (grad student) |
| Ruth Spriggs | | | | | Janet M. Thornton (post-doc) |
| Peter F. Stadler | | | | | Peter Schuster (grad student) |
| Michael Sternberg | | | | | David Chilton Phillips (grad student) |
| Robert Steward | | | | | Janet M. Thornton (post-doc) |
| Gareth Stockwell | | | | | Janet M. Thornton (grad student) |
| Bernhard Sulzer | | | | | |
| Rohit Suratekar | computational biology, developmenal biology, cell biology | | | | Sandeep Krishna (grad student), Raghu Padinjat (grad student) |
| David Talavera | | | | | Janet M. Thornton (research scientist) |
| Shir Mohammad Tavangari | Computer network,Wireless network,algorithms | | | | |
| Ei Teramoto | Theoretical Biology, Statistical Physics | | | | Hideki Yukawa (grad student) |
| Vesteinn Thorsson | | | | | |
| Masaru Tomita | | | | | Herbert A. Simon (grad student) |
| Maya Topf | | | | | Andrej Sali (grad student) |
| James Torrance | | | | | Janet M. Thornton (grad student) |
| Jerry Tsai | | | | | |
| Jun'ichi Tsujii | | | | | Makoto Nagao (grad student) |
| Greg Turk | | | | | Henry Fuchs (grad student) |
| Michele Vendruscolo | Protein biophysics | | | | Martin Karplus (post-doc) |
| Shefali Setia Verma | Human genetics, computational biology | | | | Marylyn D. Ritchie (grad student) |
| Anurag Verma | | | | | Marylyn D. Ritchie (grad student) |
| Richard Vieweg | | | | | Wilhelm Ludwig Franz Hallwachs (grad student) |
| Martin Vingron | | | | | |
| Joshua Tzvi Vogelstein | computational, circuit inference, fluorescence imaging | | | | Carey E. Priebe (post-doc) |
| Rebecca C Wade | | | | | J. Andrew McCammon (post-doc) |
| Bjorn Wallner | | | | | |
| Zhipeng Wang | Gene Regulatory Networks, Stochastic Modeling, Dynamical Systems, Machine Learning, Nonparametric Statistics | | | | Peter G. Wolynes (grad student), José Nelson Onuchic (grad student) |
| Xinchen Wang | | | | | David Goldstein (post-doc) |
| Jon Ward | | | | | Janet M. Thornton (research scientist) |
| Lucas D. Ward | | | | 2005 | Iva Susan Greenwald (research assistant), Virginia W. Cornish (research assistant), Joel G. Belasco (research assistant) |
| James Watson | | | | | Janet M. Thornton (research scientist) |
| Stanley Watson | molecular neruobiology | | | | Jack Barchas (post-doc) |
| Fiona M. Watt | | | | | Henry Harris (grad student) |
| Gregory P Way | | | 2018 | 2021 | Anne E. Carpenter (post-doc) |
| William Wedemeyer | | | | | |
| Ron Wehrens | | | | | Gerrit Kateman (grad student) |
| Jochen Weile | | | | | |
| Joshua S. Weitz | | | | | Simon Asher Levin (post-doc), Daniel Harris Rothman (grad student) |
| Gordon Whamond | | | | | Janet M. Thornton (grad student) |
| Egon Willighagen | computational biology, chemometrics, cheminformatics | | | | Peter Murray-Rust (grad student) |
| R. M. Wilson | | | | | Dijen K. Ray-Chaudhuri (grad student) |
| Andrew Wollacott | | | | | |
| Zhong-Ru (Paul) Xie | Structural Bioinformatics, Computational Drug Discovery | | 2013 | 2016 | Yinghao Wu (post-doc) |
| Archana Yadav | Computational biology, single celll tramscriptomics, Neurology | | | | Gitanjali Yadav (grad student) |
| Li Yang | | | 2007 | 2010 | Sidney Altman (post-doc), Brenton R. Graveley (post-doc) |
| Li Yang | | | 2007 | 2010 | Sidney Altman (post-doc), Brenton R. Graveley (post-doc) |
| Wei Yang | computational protein design | | 2012 | 2019 | Luhua Lai (grad student), David Baker (post-doc) |
| Yasuo Yoshikuni | | | | | |
| Xiaofeng Yu | | | | | Rebecca C Wade (grad student) |
| Yuwei Zhang | Imaging informatics | | | | Rajarsi Gupta (grad student), Joel Saltz (grad student) |