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David Baker

Affiliations: 
Biochemistry University of Washington, Seattle, Seattle, WA 
Area:
protein structure prediction
Website:
http://depts.washington.edu/biowww/pages/faculty-Baker.shtml
Google:
"David Baker"
Bio:

http://www.nasonline.org/member-directory/members/20012424.html
http://www.bakerlab.org/
http://www.hhmi.org/scientists/david-baker
http://www.math.washington.edu/mac/bios/baker_bio.html
biosketch

Cross-listing: Chemistry Tree

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Parents

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Randy W. Schekman grad student 1989 UC Berkeley (Cell Biology Tree)
 (Reconstitution of intercompartmental protein transport in yeast extracts)
David A. Agard post-doc 1990-1993 UCSF (Chemistry Tree)

Children

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Jeff Nivala research assistant 2008-2010 University of Washington (Chemistry Tree)
Baihan Lin research assistant 2015-2017 University of Washington (Neurotree)
Sergey Ovchinnikov grad student (Chemistry Tree)
Hongdi Gu grad student 1993-1997 University of Washington (Chemistry Tree)
Viara P. Grantcharova grad student 2000 University of Washington
Eric J. Alm grad student 2001 University of Washington (BME Tree)
Richard A. Bonneau grad student 2001 University of Washington
Alexandre V. Morozov grad student 2003 University of Washington
Sehat Nauli grad student 2003 University of Washington
Dylan C. Chivian grad student 2005 University of Washington
Gautam Dantas grad student 2005 University of Washington
Alexander L. Watters grad student 2005 University of Washington
Lin Jiang grad student 2007 University of Washington
Lukasz A. Joachimiak grad student 2007 University of Washington
Chu Wang grad student 2007 University of Washington
Paul M. Murphy grad student 2008 University of Washington
Gong Cheng grad student 2002-2008 University of Washington
Justin Ashworth grad student 2009 University of Washington
Srivatsan Raman grad student 2009 UW Madison
William H. Sheffler grad student 2009 University of Washington
Alexandre Zanghellini grad student 2009 University of Washington
Robert Vernon grad student 2010 University of Washington
Justin B. Siegel grad student 2011 University of Washington (Chemistry Tree)
James Thompson grad student 2011 University of Washington
Elizabeth H. Kellogg grad student 2012 University of Washington
Florian Richter grad student 2012 University of Washington
Summer B. Thyme grad student 2012 University of Washington
Nikolaos G. Sgourakis grad student 2010-2012 (BME Tree)
Sandrine Boissel grad student 2013 University of Washington
Javier Castellanos grad student 2014 University of Washington
Patrick Conway grad student 2014 University of Washington
Chris King grad student 2014 University of Washington
Ray Yu-Ruei Wang grad student 2015 University of Washington
Jorgen W Nelson grad student 2012-2018 University of Washington
Zibo Chen grad student 2013-2018 University of Washington (Chemistry Tree)
Hao Shen grad student 2015-2019 University of Washington
Eric Althoff post-doc University of Washington
Ingemar Andre post-doc University of Washington
Yih-En Andrew Ban post-doc University of Washington
Patrick Barth post-doc University of Washington
Peter Bowers post-doc University of Washington
Phil Bradley post-doc University of Washington
Christopher Bystroff post-doc University of Washington
Ian Davis post-doc University of Washington
Jeffrey J. Gray post-doc University of Washington
Jim Havranek post-doc University of Washington
John Karanicolas post-doc University of Washington
Tanja Kortemme post-doc University of Washington
Brian Kuhlman post-doc University of Washington
Andrew Leaver-Fay post-doc University of Washington
Yuan Liu post-doc University of Science & Technology of China (Chemistry Tree)
Jens Meiler post-doc University of Washington
Kira Misura post-doc University of Washington
Gabriel J. Rocklin post-doc University of Washington (Chemistry Tree)
Daniella Roethlisberger post-doc University of Washington
Carol A. Rohl post-doc University of Washington
Patrick J. Salveson post-doc (Chemistry Tree)
Ora Schueler-Furman post-doc University of Washington
Yifan Song post-doc (Physics Tree)
Vanita Sood post-doc University of Washington
Vesteinn Thorsson post-doc University of Washington
Jerry Tsai post-doc University of Washington
Bjorn Wallner post-doc University of Washington
William Wedemeyer post-doc University of Washington
Andrew Wollacott post-doc University of Washington
Wei Yang post-doc
Yasuo Yoshikuni post-doc University of Washington
Chunfu Xu post-doc 2014- University of Washington (Chemistry Tree)
Ralph A. Cacho post-doc 2015- University of Washington (Chemistry Tree)
Peilong Lu post-doc 2015- University of Washngton, Seattle (Chemistry Tree)
Shane Justin Caldwell post-doc 2017- University of Washington
Zhe Li post-doc 2019- University of Washington (Chemistry Tree)
Hsien-Wei Yeh post-doc 2019- University of Washington (Chemistry Tree)
Victor Adebomi post-doc 2022- University of Washington (Chemistry Tree)
Declan Evans post-doc 2023- University of Washington (Chemistry Tree)
Kevin W. Plaxco post-doc 1997-1998 University of Washington (Chemistry Tree)
Rhiju Das post-doc 2005-2008 University of Washington
Po-Ssu Huang post-doc 2006-2011 University of Washington (Chemistry Tree)
Sagar Khare post-doc 2005-2012 University of Washington (Physics Tree)
Firas Khatib post-doc 2008-2013 University of Washington (Chemistry Tree)
Lucas G. Nivon post-doc 2008-2014 University of Washington (Chemistry Tree)
Jeremy H. Mills post-doc 2015 University of Washington (Chemistry Tree)
Christopher D. Bahl post-doc 2012-2017 University of Washington (Microtree)
Vladimir Yarov-Yarovoy research scientist 2001-2010 University of Washington

Collaborators

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Publications

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Sheffler W, Yang EC, Dowling Q, et al. (2023) Fast and versatile sequence-independent protein docking for nanomaterials design using RPXDock. Plos Computational Biology. 19: e1010680
Ennist N, Wang S, Kennedy M, et al. (2023) De novo design of energy transfer proteins housing excitonically coupled chlorophyll special pairs. Research Square
Lutz ID, Wang S, Norn C, et al. (2023) Top-down design of protein architectures with reinforcement learning. Science (New York, N.Y.). 380: 266-273
Kibler RD, Lee S, Kennedy MA, et al. (2023) Stepwise design of pseudosymmetric protein hetero-oligomers. Biorxiv : the Preprint Server For Biology
Wu K, Bai H, Chang YT, et al. (2023) De novo design of modular peptide-binding proteins by superhelical matching. Nature
Edman NI, Redler RL, Phal A, et al. (2023) Modulation of FGF pathway signaling and vascular differentiation using designed oligomeric assemblies. Biorxiv : the Preprint Server For Biology
Kim DE, Jensen DR, Feldman D, et al. (2023) De novo design of small beta barrel proteins. Proceedings of the National Academy of Sciences of the United States of America. 120: e2207974120
Wang JYJ, Khmelinskaia A, Sheffler W, et al. (2023) Improving the secretion of designed protein assemblies through negative design of cryptic transmembrane domains. Proceedings of the National Academy of Sciences of the United States of America. 120: e2214556120
Yeh AH, Norn C, Kipnis Y, et al. (2023) De novo design of luciferases using deep learning. Nature. 614: 774-780
Nieweglowska ES, Brilot AF, Méndez-Moran M, et al. (2023) The ϕPA3 phage nucleus is enclosed by a self-assembling 2D crystalline lattice. Nature Communications. 14: 927
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