Jeffrey J. Gray, Ph.D.

2002- Chemical & Biomolecular Engineering Johns Hopkins University, Baltimore, MD 
Protein docking, structure prediction and design, macromolecular assemblies
"Jeffrey J. Gray Hopkins"


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Elizabeth M. Y. Lee research assistant 2009-2011 Johns Hopkins (Chemistry Tree)
Michael D. Daily grad student 2008 Johns Hopkins
David L. Masica grad student 2009 Johns Hopkins (Chemistry Tree)
Monica Berrondo grad student 2010 Johns Hopkins
Sidhartha Chaudhury grad student 2010 Johns Hopkins
Aroop Sircar grad student 2010 Johns Hopkins
Krishna Kilambi grad student 2015 Johns Hopkins
Brian Weitzner grad student 2015 Johns Hopkins
Shourya S. Roy Burman grad student 2012-2018 Johns Hopkins
Arvind Sivasubramanian post-doc 2004-2008 Johns Hopkins
Myunggi Yi post-doc 2010-2011 Johns Hopkins
Daisuke Kuroda post-doc 2011-2014 Johns Hopkins
Julia K. Leman post-doc 2012-2016 Johns Hopkins
Jason W. Labonte post-doc 2011-2017 Johns Hopkins (Chemistry Tree)
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Cocoros NM, Kleinman K, Priebe GP, et al. (2015) Ventilator-Associated Events in Neonates and Children-A New Paradigm. Critical Care Medicine
Pierre B, Labonte JW, Xiong T, et al. (2015) Molecular Determinants for Protein Stabilization by Insertional Fusion to a Thermophilic Host Protein. Chembiochem : a European Journal of Chemical Biology
Alford RF, Koehler Leman J, Weitzner BD, et al. (2015) An Integrated Framework Advancing Membrane Protein Modeling and Design. Plos Computational Biology. 11: e1004398
Jiang Q, Arnold S, Heanue T, et al. (2015) Functional loss of semaphorin 3C and/or semaphorin 3D and their epistatic interaction with ret are critical to Hirschsprung disease liability. American Journal of Human Genetics. 96: 581-96
Weitzner BD, Dunbrack RL, Gray JJ. (2015) The origin of CDR H3 structural diversity. Structure (London, England : 1993). 23: 302-11
Koehler Leman J, Ulmschneider MB, Gray JJ. (2015) Computational modeling of membrane proteins. Proteins. 83: 1-24
Matlahov I, Iline-Vul T, Abayev M, et al. (2015) Interfacial Mineral-Peptide Properties of a Mineral Binding Peptide from Osteonectin and Bone-like Apatite Chemistry of Materials. 27: 5562-5569
Kilambi KP, Reddy K, Gray JJ. (2014) Protein-protein docking with dynamic residue protonation states. Plos Computational Biology. 10: e1004018
Firnberg E, Labonte JW, Gray JJ, et al. (2014) A comprehensive, high-resolution map of a gene's fitness landscape. Molecular Biology and Evolution. 31: 1581-92
Weitzner BD, Kuroda D, Marze N, et al. (2014) Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization. Proteins. 82: 1611-23
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