Jeffrey J. Gray, Ph.D.
Affiliations: | 2002- | Chemical & Biomolecular Engineering | Johns Hopkins University, Baltimore, MD |
Area:
Protein docking, structure prediction and design, macromolecular assembliesWebsite:
http://graylab.jhu.eduGoogle:
"Jeffrey J. Gray Hopkins"Parents
Sign in to add mentor| Roger T. Bonnecaze | grad student | 1994-2000 | UT Austin (E-Tree) |
| David Baker | post-doc | University of Washington |
Children
Sign in to add trainee| Elizabeth M. Y. Lee | research assistant | 2009-2011 | Johns Hopkins (Chemistry Tree) |
| Michael D. Daily | grad student | 2008 | Johns Hopkins |
| David L. Masica | grad student | 2009 | Johns Hopkins (Chemistry Tree) |
| Monica Berrondo | grad student | 2010 | Johns Hopkins |
| Sidhartha Chaudhury | grad student | 2010 | Johns Hopkins |
| Aroop Sircar | grad student | 2010 | Johns Hopkins |
| Krishna Kilambi | grad student | 2015 | Johns Hopkins |
| Brian Weitzner | grad student | 2015 | Johns Hopkins |
| Shourya S. Roy Burman | grad student | 2012-2018 | Johns Hopkins |
| Arvind Sivasubramanian | post-doc | 2004-2008 | Johns Hopkins |
| Myunggi Yi | post-doc | 2010-2011 | Johns Hopkins |
| Daisuke Kuroda | post-doc | 2011-2014 | Johns Hopkins |
| Julia K. Leman | post-doc | 2012-2016 | Johns Hopkins |
| Jason W. Labonte | post-doc | 2011-2017 | Johns Hopkins (Chemistry Tree) |
BETA: Related publications
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Publications
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| Ruffolo JA, Guerra C, Mahajan SP, et al. (2020) Geometric potentials from deep learning improve prediction of CDR H3 loop structures. Bioinformatics (Oxford, England). 36: i268-i275 |
| Alford RF, Smolin N, Young HS, et al. (2020) Protein docking and steered molecular dynamics suggest alternative phospholamban-binding sites on the SERCA calcium transporter. The Journal of Biological Chemistry |
| Leman JK, Weitzner BD, Lewis SM, et al. (2020) Macromolecular modeling and design in Rosetta: recent methods and frameworks. Nature Methods |
| Koehler Leman J, Weitzner BD, Renfrew PD, et al. (2020) Better together: Elements of successful scientific software development in a distributed collaborative community. Plos Computational Biology. 16: e1007507 |
| Lee J, Der BS, Karamitros CS, et al. (2020) Computer-based Engineering of Thermostabilized Antibody Fragments. Aiche Journal. American Institute of Chemical Engineers. 66 |
| Alford RF, Fleming PJ, Fleming KG, et al. (2020) Protein Structure Prediction and Design in a Biologically Realistic Implicit Membrane. Biophysical Journal |
| Leman JK, Weitzner BD, Renfrew PD, et al. (2020) Members of the RosettaCommons Consortium. Plos Computational Biology |
| Leman JK, Weitzner BD, Renfrew PD, et al. (2020) Details of Remaining Collective Challenges. Plos Computational Biology |
| Leman JK, Weitzner BD, Renfrew PD, et al. (2020) Commercial spin-off companies from the Rosetta community. Plos Computational Biology |
| Leman JK, Weitzner BD, Renfrew PD, et al. (2020) Values Statement: Equality and Inclusion in the RosettaCommons. Plos Computational Biology |