John H. Gennari, Ph.D.
Affiliations: | University of Washington, Seattle, Seattle, WA |
Area:
biomedical and health informaticsGoogle:
"John Gennari"Children
Sign in to add trainee| Chunhua Weng | grad student | 2005 | University of Washington |
| Ching-Ping Lin | grad student | 2010 | University of Washington |
| Maxwell L. Neal | grad student | 2010 | University of Washington |
| Michal Galdzicki | grad student | 2007-2012 | University of Washington |
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Publications
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| Ma S, Fan L, Konanki SA, et al. (2023) VSCode-Antimony: A Source Editor for Building, Analyzing, and Translating Antimony Models. Bioinformatics (Oxford, England) |
| Shin W, Gennari JH, Hellerstein JL, et al. (2023) An automated model annotation system (AMAS) for SBML models. Bioinformatics (Oxford, England). 39 |
| Shin W, Gennari JH, Hellerstein JL, et al. (2023) An Automated Model Annotation System (AMAS) for SBML Models. Biorxiv : the Preprint Server For Biology |
| Shaikh B, Smith LP, Vasilescu D, et al. (2022) BioSimulators: a central registry of simulation engines and services for recommending specific tools. Nucleic Acids Research |
| Munarko Y, Sarwar DM, Rampadarath A, et al. (2022) NLIMED: Natural Language Interface for Model Entity Discovery in Biosimulation Model Repositories. Frontiers in Physiology. 13: 820683 |
| Gennari JH, König M, Misirli G, et al. (2021) OMEX metadata specification (version 1.2). Journal of Integrative Bioinformatics. 18 |
| Welsh C, Nickerson DP, Rampadarath A, et al. (2021) libOmexMeta: Enabling semantic annotation of models to support FAIR principles. Bioinformatics (Oxford, England) |
| Neal ML, Gennari JH, Waltemath D, et al. (2020) Open modeling and exchange (OMEX) metadata specification version 1.0. Journal of Integrative Bioinformatics |
| Sarwar DM, Kalbasi R, Gennari JH, et al. (2019) Model annotation and discovery with the Physiome Model Repository. Bmc Bioinformatics. 20: 457 |
| Madsen C, Goñi Moreno A, P U, et al. (2019) Synthetic Biology Open Language (SBOL) Version 2.3. Journal of Integrative Bioinformatics |