Simon Whelan, Ph.D.
Affiliations: | Evolutionary Biology | Uppsala University, Uppsala, Uppsala län, Sweden |
Area:
Molecular EvolutionGoogle:
"Simon Whelan"Children
Sign in to add traineeDaniel Money | grad student | 2007-2011 | The University of Manchester |
James Allen | grad student | 2008-2012 | The University of Manchester |
Laura Emery | grad student | 2011-2012 | The University of Manchester |
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Publications
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Irisarri I, Burki F, Whelan S. (2021) Automated Removal of Non-homologous Sequence Stretches with PREQUAL. Methods in Molecular Biology (Clifton, N.J.). 2231: 147-162 |
Varón-González C, Whelan S, Klingenberg CP. (2020) Estimating Phylogenies from Shape and Similar Multidimensional Data: Why It Is Not Reliable. Systematic Biology |
Whelan S, Irisarri I, Burki F. (2018) PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences. Bioinformatics (Oxford, England) |
Whelan S, Morrison DA. (2017) Inferring Trees. Methods in Molecular Biology (Clifton, N.J.). 1525: 349-377 |
Md Mukarram Hossain AS, Blackburne BP, Shah A, et al. (2015) Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty. Genome Biology and Evolution. 7: 2102-16 |
Talavera D, Lovell SC, Whelan S. (2015) Covariation Is a Poor Measure of Molecular Coevolution. Molecular Biology and Evolution |
Money D, Whelan S. (2015) GeLL: a generalized likelihood library for phylogenetic models. Bioinformatics (Oxford, England). 31: 2391-3 |
Whelan S, Allen JE, Blackburne BP, et al. (2015) ModelOMatic: fast and automated model selection between RY, nucleotide, amino acid, and codon substitution models. Systematic Biology. 64: 42-55 |
Allen JE, Whelan S. (2014) Assessing the state of substitution models describing noncoding RNA evolution. Genome Biology and Evolution. 6: 65-75 |
Blackburne BP, Whelan S. (2013) Class of multiple sequence alignment algorithm affects genomic analysis Molecular Biology and Evolution. 30: 642-653 |