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Simon Whelan, Ph.D.

Affiliations: 
Evolutionary Biology Uppsala University, Uppsala, Uppsala län, Sweden 
Area:
Molecular Evolution
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"Simon Whelan"
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Parents

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Nick Goldman grad student 1997-2000 Cambridge

Children

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Daniel Money grad student 2007-2011 The University of Manchester
James Allen grad student 2008-2012 The University of Manchester
Laura Emery grad student 2011-2012 The University of Manchester

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Publications

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Irisarri I, Burki F, Whelan S. (2021) Automated Removal of Non-homologous Sequence Stretches with PREQUAL. Methods in Molecular Biology (Clifton, N.J.). 2231: 147-162
Varón-González C, Whelan S, Klingenberg CP. (2020) Estimating Phylogenies from Shape and Similar Multidimensional Data: Why It Is Not Reliable. Systematic Biology
Whelan S, Irisarri I, Burki F. (2018) PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences. Bioinformatics (Oxford, England)
Whelan S, Morrison DA. (2017) Inferring Trees. Methods in Molecular Biology (Clifton, N.J.). 1525: 349-377
Md Mukarram Hossain AS, Blackburne BP, Shah A, et al. (2015) Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty. Genome Biology and Evolution. 7: 2102-16
Talavera D, Lovell SC, Whelan S. (2015) Covariation Is a Poor Measure of Molecular Coevolution. Molecular Biology and Evolution
Money D, Whelan S. (2015) GeLL: a generalized likelihood library for phylogenetic models. Bioinformatics (Oxford, England). 31: 2391-3
Whelan S, Allen JE, Blackburne BP, et al. (2015) ModelOMatic: fast and automated model selection between RY, nucleotide, amino acid, and codon substitution models. Systematic Biology. 64: 42-55
Allen JE, Whelan S. (2014) Assessing the state of substitution models describing noncoding RNA evolution. Genome Biology and Evolution. 6: 65-75
Blackburne BP, Whelan S. (2013) Class of multiple sequence alignment algorithm affects genomic analysis Molecular Biology and Evolution. 30: 642-653
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