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Simon Whelan, Ph.D.

Affiliations: 
Evolutionary Biology Uppsala University, Uppsala, Uppsala län, Sweden 
Area:
Molecular Evolution
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"Simon Whelan"
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Parents

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Nick Goldman grad student 1997-2000 Cambridge

Children

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Daniel Money grad student 2007-2011 The University of Manchester
James Allen grad student 2008-2012 The University of Manchester
Laura Emery grad student 2011-2012 The University of Manchester

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Publications

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Md Mukarram Hossain AS, Blackburne BP, Shah A, et al. (2015) Evidence of Statistical Inconsistency of Phylogenetic Methods in the Presence of Multiple Sequence Alignment Uncertainty. Genome Biology and Evolution. 7: 2102-16
Talavera D, Lovell SC, Whelan S. (2015) Covariation Is a Poor Measure of Molecular Coevolution. Molecular Biology and Evolution
Money D, Whelan S. (2015) GeLL: a generalized likelihood library for phylogenetic models. Bioinformatics (Oxford, England). 31: 2391-3
Whelan S, Allen JE, Blackburne BP, et al. (2015) ModelOMatic: fast and automated model selection between RY, nucleotide, amino acid, and codon substitution models. Systematic Biology. 64: 42-55
García-Pereira MJ, Carvajal-Rodríguez A, Whelan S, et al. (2014) Impact of deep coalescence and recombination on the estimation of phylogenetic relationships among species using AFLP markers. Molecular Phylogenetics and Evolution. 76: 102-9
Allen JE, Whelan S. (2014) Assessing the state of substitution models describing noncoding RNA evolution. Genome Biology and Evolution. 6: 65-75
Blackburne BP, Whelan S. (2013) Class of multiple sequence alignment algorithm affects genomic analysis Molecular Biology and Evolution. 30: 642-653
Emery L, Whelan S, Hirschi KD, et al. (2012) Protein Phylogenetic Analysis of Ca(2+)/cation Antiporters and Insights into their Evolution in Plants. Frontiers in Plant Science. 3: 1
Liberles DA, Teichmann SA, Bahar I, et al. (2012) The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85
Blackburne BP, Whelan S. (2012) Measuring the distance between multiple sequence alignments Bioinformatics. 28: 495-502
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