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Giltae Song, Ph.D. - Publications

Affiliations: 
2011 Pennsylvania State University, State College, PA, United States 
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Roodgar M, Babveyh A, Nguyen LH, Zhou W, Sinha R, Lee H, Hanks JB, Avula M, Jiang L, Jian R, Lee H, Song G, Chaib H, Weissman IL, Batzoglou S, et al. Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding. Gigascience. 9. PMID 32649757 DOI: 10.1093/Gigascience/Giaa069  0.361
2020 Oh D, Strattan JS, Hur JK, Bento J, Urban AE, Song G, Cherry JM. CNN-Peaks: ChIP-Seq peak detection pipeline using convolutional neural networks that imitate human visual inspection. Scientific Reports. 10: 7933. PMID 32404971 DOI: 10.1038/S41598-020-64655-4  0.338
2019 Song G, Lee J, Kim J, Kang S, Lee H, Kwon D, Lee D, Lang GI, Cherry JM, Kim J. Integrative Meta-Assembly Pipeline (IMAP): Chromosome-level genome assembler combining multiple de novo assemblies. Plos One. 14: e0221858. PMID 31454399 DOI: 10.1371/Journal.Pone.0221858  0.396
2019 Zhou B, Ho SS, Greer SU, Spies N, Bell JM, Zhang X, Zhu X, Arthur JG, Byeon S, Pattni R, Saha I, Huang Y, Song G, Perrin D, Wong WH, et al. Haplotype-resolved and integrated genome analysis of the cancer cell line HepG2. Nucleic Acids Research. PMID 30864654 DOI: 10.1093/Nar/Gkz169  0.409
2019 Zhou B, Ho SS, Greer SU, Zhu X, Bell JM, Arthur JG, Spies N, Zhang X, Byeon S, Pattni R, Ben-Efraim N, Haney MS, Haraksingh RR, Song G, Ji HP, et al. Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562. Genome Research. PMID 30737237 DOI: 10.1101/Gr.234948.118  0.391
2019 Bae T, Hwang WC, Lee D, Song G, Hur JW, Hur JK. Characterization of distinct mutation patterns by CRISPR-Cas9 and CRISPR-Cpf1 genome editing systems Molecular & Cellular Toxicology. 15: 383-389. DOI: 10.1007/S13273-019-0041-9  0.402
2018 Hwang D, Choi S, Shin J, Song G, Choi Y. Privacy-Preserving Compressed Reference-Oriented Alignment Map Using Decentralized Storage Ieee Access. 6: 45990-46001. DOI: 10.1109/Access.2018.2865994  0.38
2016 Song G, Balakrishnan R, Binkley G, Costanzo MC, Dalusag K, Demeter J, Engel S, Hellerstedt ST, Karra K, Hitz BC, Nash RS, Paskov K, Sheppard T, Skrzypek M, Weng S, et al. Integration of new alternative reference strain genome sequences into the Saccharomyces genome database. Database : the Journal of Biological Databases and Curation. 2016. PMID 27252399 DOI: 10.1093/Database/Baw074  0.395
2016 Engel SR, Weng S, Binkley G, Paskov K, Song G, Cherry JM. From one to many: expanding the Saccharomyces cerevisiae reference genome panel. Database : the Journal of Biological Databases and Curation. 2016. PMID 26989152 DOI: 10.1093/Database/Baw020  0.399
2015 Sheppard TK, Hitz BC, Engel SR, Song G, Balakrishnan R, Binkley G, Costanzo MC, Dalusag KS, Demeter J, Hellerstedt ST, Karra K, Nash RS, Paskov KM, Skrzypek MS, Weng S, et al. The Saccharomyces Genome Database Variant Viewer. Nucleic Acids Research. PMID 26578556 DOI: 10.1093/Nar/Gkv1250  0.397
2015 Song G, Dickins BJ, Demeter J, Engel S, Gallagher J, Choe K, Dunn B, Snyder M, Cherry JM. Correction: AGAPE (Automated Genome Analysis PipelinE) for Pan-Genome Analysis of Saccharomyces cerevisiae. Plos One. 10: e0129184. PMID 26017550 DOI: 10.1371/Journal.Pone.0129184  0.367
2015 Song G, Dickins BJ, Demeter J, Engel S, Dunn B, Cherry JM. AGAPE (Automated Genome Analysis PipelinE) for pan-genome analysis of Saccharomyces cerevisiae. Plos One. 10: e0120671. PMID 25781462 DOI: 10.1371/Journal.Pone.0120671  0.416
2015 Li C, Zhang C, Song G, Liu H, Sheng G, Ding Z, Wang Z, Sun Y, Xu Y, Chen J. Characterization of a protocatechuate catabolic gene cluster in Rhodococcus ruber OA1 involved in naphthalene degradation Annals of Microbiology. DOI: 10.1007/s13213-015-1132-z  0.405
2012 Song G, Riemer C, Dickins B, Kim HL, Zhang L, Zhang Y, Hsu CH, Hardison RC, Nisc Comparative Sequencing Program, Green ED, Miller W. Revealing mammalian evolutionary relationships by comparative analysis of gene clusters. Genome Biology and Evolution. 4: 586-601. PMID 22454131 DOI: 10.1093/Gbe/Evs032  0.7
2011 Song G, Hsu CH, Riemer C, Zhang Y, Kim HL, Hoffmann F, Zhang L, Hardison RC, Green ED, Miller W. Conversion events in gene clusters. Bmc Evolutionary Biology. 11: 226. PMID 21798034 DOI: 10.1186/1471-2148-11-226  0.69
2011 Song G, Hsu CH, Riemer C, Miller W. Evaluation of methods for detecting conversion events in gene clusters. Bmc Bioinformatics. 12: S45. PMID 21342577 DOI: 10.1186/1471-2105-12-S1-S45  0.665
2010 Vinar T, Brejová B, Song G, Siepel A. Reconstructing histories of complex gene clusters on a phylogeny. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1267-79. PMID 20874408 DOI: 10.1089/Cmb.2010.0090  0.582
2010 Song G, Zhang L, Vinar T, Miller W. CAGE: Combinatorial Analysis of Gene-cluster Evolution. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 1227-42. PMID 20874406 DOI: 10.1089/Cmb.2010.0094  0.667
2009 Zhang Y, Song G, Vinar T, Green ED, Siepel A, Miller W. Evolutionary history reconstruction for Mammalian complex gene clusters. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 1051-70. PMID 19645598 DOI: 10.1089/Cmb.2009.0040  0.671
2009 Zhang Y, Song G, Hsu CH, Miller W. Simultaneous history reconstruction for complex gene clusters in multiple species. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 162-73. PMID 19209701  0.679
2009 Vinař T, Brejová B, Song G, Siepel A. Reconstructing Histories of Complex Gene Clusters on a Phylogeny Lecture Notes in Computer Science. 5817: 150. DOI: 10.1007/978-3-642-04744-2_13  0.496
2009 Song G, Zhang L, Vinař T, Miller W. Inferring the recent duplication history of a gene cluster Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5817: 111-125. DOI: 10.1007/978-3-642-04744-2_10  0.59
2008 Zhang Y, Song G, Vinař T, Green ED, Siepel A, Miller W. Reconstructing the evolutionary history of complex human gene clusters Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4955: 29-49. DOI: 10.1007/978-3-540-78839-3_4  0.573
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